mRNA_H-canaliculatus_M_contigs8031.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8031.1.1
Unique NamemRNA_H-canaliculatus_M_contigs8031.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs8031.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP78_ECTSI)

HSP 1 Score: 220 bits (560), Expect = 2.640e-68
Identity = 140/221 (63.35%), Postives = 162/221 (73.30%), Query Frame = 1 
Query:    1 VVEKRRADEARSLQGSWFPSVMRRIVIMTKGKEGGEIPQCVTKLAAALHKVLVSGHVVTPSMFWSFVNASFLPEDHQRPCPQKMVLACLAPVHQRPENYHGFLVDNSIKVPNSLKKGFHRAHQKRAHRKG-GTKPHLGGXXXXXXXXXXXXXXXKLD-------SHRGSTISLLMMAXXXXXXXXXXGGNFTDCGSDDMSASDTMSVFSVATHLGGVGEAT 639
            V  K+RADEA SL+GSWFPSVMRR++IM +GKEGGE+P+C+TKLAAALHKVL SGH VTP +FWS V ASFLPEDHQ P  QKM+L CL  VHQR ENYH FLV++SIKVP+SLK+   RA+QKRAH+KG   K HLG XXXXXXXXXXXXXXX           H  S +S+  +            GN +D GSDDMS  DTMSVFSV+T LGG G+AT
Sbjct:   85 VAAKQRADEATSLEGSWFPSVMRRMLIMVQGKEGGEVPRCMTKLAAALHKVLTSGHAVTPYIFWSLVGASFLPEDHQNPPAQKMILTCLTFVHQRRENYHDFLVEHSIKVPSSLKQAVQRANQKRAHKKGVSKKSHLGXXXXXXXXXXXXXXXXXXXXALEGGHGHGSSAVSIKYIGGAGV-------GNVSDAGSDDMS--DTMSVFSVSTQLGG-GQAT 295
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8031.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized2.640e-6863.35protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8031contigH-canaliculatus_M_contigs8031:394..1486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Model size642
Hectar predicted targeting categoryother localisation
Exons2
Cds size642
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854131.7965946-CDS-H-canaliculatus_M_contigs8031:393..5431696854131.7965946-CDS-H-canaliculatus_M_contigs8031:393..543Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8031 394..543 +
1696854131.8117898-CDS-H-canaliculatus_M_contigs8031:994..14861696854131.8117898-CDS-H-canaliculatus_M_contigs8031:994..1486Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8031 995..1486 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8031.1.1prot_H-canaliculatus_M_contigs8031.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8031 394..1486 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8031.1.1

>prot_H-canaliculatus_M_contigs8031.1.1 ID=prot_H-canaliculatus_M_contigs8031.1.1|Name=mRNA_H-canaliculatus_M_contigs8031.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=214bp
VVEKRRADEARSLQGSWFPSVMRRIVIMTKGKEGGEIPQCVTKLAAALHK
VLVSGHVVTPSMFWSFVNASFLPEDHQRPCPQKMVLACLAPVHQRPENYH
GFLVDNSIKVPNSLKKGFHRAHQKRAHRKGGTKPHLGGGSGGGGGGSVGG
GGGKLDSHRGSTISLLMMAGGAGHGGSSAGGNFTDCGSDDMSASDTMSVF
SVATHLGGVGEAT*
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mRNA from alignment at H-canaliculatus_M_contigs8031:394..1486+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8031.1.1 ID=mRNA_H-canaliculatus_M_contigs8031.1.1|Name=mRNA_H-canaliculatus_M_contigs8031.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1093bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8031:394..1486+ (Hapterophycus canaliculatus Oshoro7m male)
GTGGTCGAGAAACGGCGAGCGGACGAGGCGAGAAGTCTGCAGGGCTCCTG
GTTTCCATCTGTAATGAGGCGAATTGTCATCATGACGAAGGGGAAGGAAG
GGGGCGAGATTCCGCAGTGCGTGACCAAGCTTGCCGCGGCCCTGCACAAG
GTTCGGACCTGCAGTGTGTTGTGCCGTGCGGCTTTCGCCGTACGTTACGG
TGCGGTGCAACGCGGTTCGCAGAACTCCGACCCAAGGCGACCTGGTGTCG
TACGGCGCGGTGCTAGTACTGTTCTTATGTCCTCGGGAGTCAGGGTGGTG
TTGCTACTGGCGGTCAATCGTTGTTTACGGAGAGATAGACATCCAATGCC
ACAGATTGCACCAGGGAAGACAGTCATAGCTTTTTGTGATAACAAGGTAA
CGCGTCCTAGGAAACATAAGCGTCAGGCACGAAACAAACGTGTTTAGGAT
CGCTCCTCTTGTTGACCTTCTACCACGCACAAGCTTCCTTCAACGTCGGC
GTTGCAGTGCATAGCTTTTTCCTCCTCGGGGTTTTCGTGCTTCGTCCTAC
GTGCCGTCTGCGCAACACTGCTTAGCACAATCCACACAACACCCGACGCA
GGTGCTCGTGAGCGGACACGTGGTGACACCTTCCATGTTCTGGTCGTTCG
TGAACGCCTCGTTCCTGCCGGAAGACCACCAGAGGCCCTGCCCACAGAAG
ATGGTTCTCGCCTGCCTGGCCCCCGTGCACCAGCGGCCGGAAAATTACCA
CGGTTTTCTCGTGGACAACTCCATTAAGGTGCCGAACTCGCTCAAGAAGG
GTTTCCACCGGGCACACCAGAAACGGGCCCACAGGAAGGGAGGGACGAAG
CCGCACCTAGGCGGTGGCAGTGGCGGTGGCGGTGGCGGTAGTGTAGGCGG
CGGCGGCGGCAAGCTGGACAGCCATCGTGGGTCAACCATCAGCTTGCTGA
TGATGGCCGGCGGGGCGGGACACGGTGGTTCAAGTGCGGGCGGGAACTTC
ACCGACTGCGGGAGCGACGACATGAGCGCGAGCGACACCATGTCGGTGTT
CAGCGTCGCCACGCATCTCGGCGGCGTAGGCGAAGCCACATGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8031:394..1486+

>mRNA_H-canaliculatus_M_contigs8031.1.1 ID=mRNA_H-canaliculatus_M_contigs8031.1.1|Name=mRNA_H-canaliculatus_M_contigs8031.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=642bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8031:394..1486+ (Hapterophycus canaliculatus Oshoro7m male)
GTGGTCGAGAAACGGCGAGCGGACGAGGCGAGAAGTCTGCAGGGCTCCTG
GTTTCCATCTGTAATGAGGCGAATTGTCATCATGACGAAGGGGAAGGAAG
GGGGCGAGATTCCGCAGTGCGTGACCAAGCTTGCCGCGGCCCTGCACAAG
GTGCTCGTGAGCGGACACGTGGTGACACCTTCCATGTTCTGGTCGTTCGT
GAACGCCTCGTTCCTGCCGGAAGACCACCAGAGGCCCTGCCCACAGAAGA
TGGTTCTCGCCTGCCTGGCCCCCGTGCACCAGCGGCCGGAAAATTACCAC
GGTTTTCTCGTGGACAACTCCATTAAGGTGCCGAACTCGCTCAAGAAGGG
TTTCCACCGGGCACACCAGAAACGGGCCCACAGGAAGGGAGGGACGAAGC
CGCACCTAGGCGGTGGCAGTGGCGGTGGCGGTGGCGGTAGTGTAGGCGGC
GGCGGCGGCAAGCTGGACAGCCATCGTGGGTCAACCATCAGCTTGCTGAT
GATGGCCGGCGGGGCGGGACACGGTGGTTCAAGTGCGGGCGGGAACTTCA
CCGACTGCGGGAGCGACGACATGAGCGCGAGCGACACCATGTCGGTGTTC
AGCGTCGCCACGCATCTCGGCGGCGTAGGCGAAGCCACATGA
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