mRNA_H-canaliculatus_M_contigs8026.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8026.2.1
Unique NamemRNA_H-canaliculatus_M_contigs8026.2.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs8026.2.1 vs.
Match: Integrase (catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPK8_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 3.400e-17
Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = 1 
Query:    1 PGSEKWTSDSGSTSSVTNDRSLMYDLSPAEDNREFIQVGDGRMVPVQAVGSVNLRFHMSDEHGNVPDFDVHLKDVLYAPQFGFNLFSS 264
            PGSE+W +DSG+++S TN    MYDL     +R+++ VGDGR++ VQA+GS+NL F   DE+G      V L DV       FNLFS+
Sbjct:  352 PGSERWVADSGASNSFTNSSLHMYDLQEIPASRKYVVVGDGRLLEVQAIGSINLSFFQEDENGEKTTMCVKLTDVSVVESLSFNLFST 439
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs8026.2.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN35_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 4.700e-17
Identity = 41/88 (46.59%), Postives = 57/88 (64.77%), Query Frame = 1 
Query:    1 PGSEKWTSDSGSTSSVTNDRSLMYDLSPAEDNREFIQVGDGRMVPVQAVGSVNLRFHMSDEHGNVPDFDVHLKDVLYAPQFGFNLFSS 264
            PGSE+W +DSG+++S TN+   MYDL     +R+++ VGDGR++ VQA+GS+NL F   DE+G      V L DV       FNLFS+
Sbjct:  456 PGSERWVADSGASNSFTNNSLHMYDLEEIPASRKYVVVGDGRLLEVQAIGSINLTFFQEDENGEETTMCVKLTDVSVVESLRFNLFST 543
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs8026.2.1 vs.
Match: Integrase (catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPB2_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 6.180e-17
Identity = 41/88 (46.59%), Postives = 57/88 (64.77%), Query Frame = 1 
Query:    1 PGSEKWTSDSGSTSSVTNDRSLMYDLSPAEDNREFIQVGDGRMVPVQAVGSVNLRFHMSDEHGNVPDFDVHLKDVLYAPQFGFNLFSS 264
            PGSE+W +DSG+++S TN    MYDL     +R+++ VGDGR++ VQA+GS+NL F   DE+G      V L DV    +  FNLFS+
Sbjct:  215 PGSERWVADSGASNSFTNSSIHMYDLKKILASRKYVVVGDGRLLEVQAIGSINLGFFQEDENGEKTTMCVKLTDVSVVERLSFNLFST 302
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs8026.2.1 vs.
Match: Integrase (catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8D5_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 6.340e-17
Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = 1 
Query:    1 PGSEKWTSDSGSTSSVTNDRSLMYDLSPAEDNREFIQVGDGRMVPVQAVGSVNLRFHMSDEHGNVPDFDVHLKDVLYAPQFGFNLFSS 264
            PGSE+W +DSG+++S TN    MYDL     +R+++ VGDGR++ VQA+GS+NL F   DE+G      V L DV       FNLFS+
Sbjct:  281 PGSERWVADSGASNSFTNSSLHMYDLQEIPASRKYVVVGDGRLLEVQAIGSINLSFFQVDENGEQTTMCVKLTDVSVVESLSFNLFST 368
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs8026.2.1 vs.
Match: Integrase (catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G7_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 8.680e-17
Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = 1 
Query:    1 PGSEKWTSDSGSTSSVTNDRSLMYDLSPAEDNREFIQVGDGRMVPVQAVGSVNLRFHMSDEHGNVPDFDVHLKDVLYAPQFGFNLFSS 264
            PGSE+W +DSG+++S T+    MYDL     +R+++ VGDGRM+ VQA+GS+NL F   DE+G      V L DV       FNLFS+
Sbjct:  226 PGSERWVADSGASNSFTDSSLHMYDLQAIPASRKYVVVGDGRMLEVQAIGSINLSFFQEDENGEKTTMCVKLTDVSAVESLSFNLFST 313
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs8026.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ00_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 5.550e-16
Identity = 38/88 (43.18%), Postives = 55/88 (62.50%), Query Frame = 1 
Query:    1 PGSEKWTSDSGSTSSVTNDRSLMYDLSPAEDNREFIQVGDGRMVPVQAVGSVNLRFHMSDEHGNVPDFDVHLKDVLYAPQFGFNLFSS 264
            PGSE+W ++SG++++ TN    MYDL     +R+++ V DGR++ VQA+GS+NL F   DE+G      V L DV       FNLFS+
Sbjct:   82 PGSERWVAESGASNTFTNSSLHMYDLQEIPASRKYVVVVDGRLLEVQAIGSINLSFFQEDENGEKTMMCVKLTDVSVVESLSFNLFST 169
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs8026.2.1 vs.
Match: Integrase (catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBB5_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 5.590e-16
Identity = 40/88 (45.45%), Postives = 55/88 (62.50%), Query Frame = 1 
Query:    1 PGSEKWTSDSGSTSSVTNDRSLMYDLSPAEDNREFIQVGDGRMVPVQAVGSVNLRFHMSDEHGNVPDFDVHLKDVLYAPQFGFNLFSS 264
            PGSE+W +DSG+++S TN    MYDL     +R+++ VGDGR++ VQA+GS+ L F   DE+G      V L DV       FNLFS+
Sbjct:  261 PGSERWVADSGASNSFTNSSLHMYDLQEIPASRKYVVVGDGRLLEVQAIGSIILSFFQEDENGEETTMCVKLTDVSVVESLSFNLFST 348
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs8026.2.1 vs.
Match: Integrase (catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCK7_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 2.620e-15
Identity = 38/88 (43.18%), Postives = 54/88 (61.36%), Query Frame = 1 
Query:    1 PGSEKWTSDSGSTSSVTNDRSLMYDLSPAEDNREFIQVGDGRMVPVQAVGSVNLRFHMSDEHGNVPDFDVHLKDVLYAPQFGFNLFSS 264
            PG E+W +DSG+++S  N    MYDL     +R+++ VGDG+++ VQA+GS+NL F   DE+G      V L DV       FNLFS+
Sbjct:  206 PGRERWVADSGASNSFANSSLHMYDLQEIPASRKYVVVGDGQLLEVQAIGSINLSFFQEDENGEKTTMCVKLTDVSVVESLSFNLFST 293
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs8026.2.1 vs.
Match: Integrase (catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVW1_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 3.580e-15
Identity = 39/86 (45.35%), Postives = 52/86 (60.47%), Query Frame = 1 
Query:    1 PGSEKWTSDSGSTSSVTNDRSLMYDLSPAEDNREFIQVGDGRMVPVQAVGSVNLRFHMSDEHGNVPDFDVHLKDVLYAPQFGFNLF 258
            PGSE+W +DSG+ +S TN    MYDL     +R+++ VGDGR++ VQA+GS+NL     DE+G      V L DV       FNLF
Sbjct:  102 PGSERWVADSGAGNSFTNSSLHMYDLQEIPASRKYVVVGDGRLLEVQAMGSINLSLFQEDENGETMTMCVKLTDVSVVKSLSFNLF 187
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs8026.2.1 vs.
Match: Integrase (catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LE52_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 2.260e-11
Identity = 31/63 (49.21%), Postives = 44/63 (69.84%), Query Frame = 1 
Query:    1 PGSEKWTSDSGSTSSVTNDRSLMYDLSPAEDNREFIQVGDGRMVPVQAVGSVNLRFHMSDEHG 189
            PGSEKW +DSG+ +S TN    MYDL     NR+++ VGDGR++ V+A+GS+NL F    ++G
Sbjct:  348 PGSEKWVADSGARNSFTNSDLHMYDLQEIHSNRQYVIVGDGRLLKVKAIGSINLSFFQEVDNG 410
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8026.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Integrase3.400e-1746.59catalytic domain-containing protein n=1 Tax=Ectoca... [more]
Uncharacterized4.700e-1746.59protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Integrase6.180e-1746.59catalytic domain-containing protein n=1 Tax=Ectoca... [more]
Integrase6.340e-1746.59catalytic domain-containing protein n=1 Tax=Ectoca... [more]
Integrase8.680e-1746.59catalytic domain-containing protein n=1 Tax=Ectoca... [more]
Uncharacterized5.550e-1643.18protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Integrase5.590e-1645.45catalytic domain-containing protein n=1 Tax=Ectoca... [more]
Integrase2.620e-1543.18catalytic domain-containing protein n=1 Tax=Ectoca... [more]
Integrase3.580e-1545.35catalytic domain-containing protein n=1 Tax=Ectoca... [more]
Integrase2.260e-1149.21catalytic domain-containing protein n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8026contigH-canaliculatus_M_contigs8026:4406..4675 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog5270.UM01393P0
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size270
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.7e-06
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3V2N5@5204|Basidiomycota
DescriptionRetrotransposon gag protein
Cds size270
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854131.3056302-CDS-H-canaliculatus_M_contigs8026:4405..46751696854131.3056302-CDS-H-canaliculatus_M_contigs8026:4405..4675Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8026 4406..4675 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8026.2.1prot_H-canaliculatus_M_contigs8026.2.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8026 4406..4675 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8026.2.1

>prot_H-canaliculatus_M_contigs8026.2.1 ID=prot_H-canaliculatus_M_contigs8026.2.1|Name=mRNA_H-canaliculatus_M_contigs8026.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=90bp
PGSEKWTSDSGSTSSVTNDRSLMYDLSPAEDNREFIQVGDGRMVPVQAVG
SVNLRFHMSDEHGNVPDFDVHLKDVLYAPQFGFNLFSSWK
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mRNA from alignment at H-canaliculatus_M_contigs8026:4406..4675+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8026.2.1 ID=mRNA_H-canaliculatus_M_contigs8026.2.1|Name=mRNA_H-canaliculatus_M_contigs8026.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=270bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8026:4406..4675+ (Hapterophycus canaliculatus Oshoro7m male)
CCAGGGAGTGAGAAATGGACATCAGATTCTGGGTCCACATCGTCCGTCAC
CAATGACAGGAGTTTGATGTACGACTTGAGTCCTGCTGAAGACAACCGAG
AGTTCATTCAAGTCGGAGACGGTCGAATGGTTCCGGTTCAGGCAGTAGGA
AGCGTCAACCTGAGATTTCACATGTCTGATGAGCACGGCAATGTGCCAGA
TTTCGATGTGCACTTAAAGGATGTTCTGTATGCGCCGCAATTTGGATTCA
ACCTATTTTCCTCCTGGAAA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8026:4406..4675+

>mRNA_H-canaliculatus_M_contigs8026.2.1 ID=mRNA_H-canaliculatus_M_contigs8026.2.1|Name=mRNA_H-canaliculatus_M_contigs8026.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=270bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8026:4406..4675+ (Hapterophycus canaliculatus Oshoro7m male)
CCAGGGAGTGAGAAATGGACATCAGATTCTGGGTCCACATCGTCCGTCAC
CAATGACAGGAGTTTGATGTACGACTTGAGTCCTGCTGAAGACAACCGAG
AGTTCATTCAAGTCGGAGACGGTCGAATGGTTCCGGTTCAGGCAGTAGGA
AGCGTCAACCTGAGATTTCACATGTCTGATGAGCACGGCAATGTGCCAGA
TTTCGATGTGCACTTAAAGGATGTTCTGTATGCGCCGCAATTTGGATTCA
ACCTATTTTCCTCCTGGAAA
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