mRNA_H-canaliculatus_M_contigs8019.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8019.2.1
Unique NamemRNA_H-canaliculatus_M_contigs8019.2.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs8019.2.1 vs.
Match: NAD(P)-bd_dom (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L121_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 3.130e-21
Identity = 50/72 (69.44%), Postives = 57/72 (79.17%), Query Frame = 1 
Query:    1 PEQPGDVPRTCADISKAHSMLGYSPRVAFSDGIRKTVDWYQDRAAMKAAE-----AAIDDEDAVI--DEPVT 195
            PEQPGDVPRTCADISKA +MLGY+P VAF+DGI KTVDWYQ+RAAM AA      A +DD D VI  +EP+T
Sbjct:  362 PEQPGDVPRTCADISKARAMLGYNPSVAFADGIGKTVDWYQNRAAMNAAPGVGVGAVVDDADDVIAEEEPLT 433
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BLAST of mRNA_H-canaliculatus_M_contigs8019.2.1 vs.
Match: Hypothetical (protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V514_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 6.880e-15
Identity = 31/51 (60.78%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:    1 PEQPGDVPRTCADISKAHSMLGYSPRVAFSDGIRKTVDWYQDRAAMKAAEA 153
            PEQPGDVPRTCA+ISKA  +LGYSP+V F +GIR+TV+WY++R  ++  ++
Sbjct:  201 PEQPGDVPRTCANISKARELLGYSPKVDFEEGIRRTVEWYKNRKVIEVQQS 251
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BLAST of mRNA_H-canaliculatus_M_contigs8019.2.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSN2_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.300e-14
Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    1 PEQPGDVPRTCADISKAHSMLGYSPRVAFSDGIRKTVDWYQDRAAMKAAEAA 156
            P QPGDVPRTCADISKA  +LGY+P+ +F +GIR+TV WYQ+  A   A  A
Sbjct:   93 PTQPGDVPRTCADISKARGLLGYNPQTSFEEGIRRTVQWYQEHYAQDMARGA 144
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BLAST of mRNA_H-canaliculatus_M_contigs8019.2.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EB14_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.750e-14
Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    1 PEQPGDVPRTCADISKAHSMLGYSPRVAFSDGIRKTVDWYQDRAAMKAA 147
            P QPGDVPRTCADI+KA SMLGY P+   +DGIRK V+WY+D    + A
Sbjct:   82 PNQPGDVPRTCADIAKARSMLGYDPKTPLADGIRKLVEWYRDSQVRRPA 130
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BLAST of mRNA_H-canaliculatus_M_contigs8019.2.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A1M2_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 5.340e-14
Identity = 31/42 (73.81%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 PEQPGDVPRTCADISKAHSMLGYSPRVAFSDGIRKTVDWYQD 126
            PEQPGDVPRTCADISKA  MLGY P+  F+DGIRK V+WY++
Sbjct:  290 PEQPGDVPRTCADISKARKMLGYDPKTPFADGIRKLVEWYRE 331
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BLAST of mRNA_H-canaliculatus_M_contigs8019.2.1 vs.
Match: Hypothetical (protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U9Q6_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 2.090e-13
Identity = 31/52 (59.62%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    1 PEQPGDVPRTCADISKAHSMLGYSPRVAFSDGIRKTVDWYQDRAAMKAAEAA 156
            P+QPGDVP TCAD+SKA  MLGY  +++FSDGIRKT  WY+     K  E A
Sbjct:  100 PDQPGDVPYTCADVSKAQRMLGYKAQISFSDGIRKTAQWYRTAFDNKVLEVA 151
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BLAST of mRNA_H-canaliculatus_M_contigs8019.2.1 vs.
Match: NAD(P)-bd_dom (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHB0_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.350e-13
Identity = 37/62 (59.68%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:    1 PEQPGDVPRTCADISKAHSMLGYSPRVAFSDGIRKTVDWYQ----------DRAAMKAAEAA 156
            PEQPGDVPRTCADISKA  +LGY P+V+F DGI  TV WY+          D AA K A AA
Sbjct:  333 PEQPGDVPRTCADISKARRLLGYDPKVSFEDGIAATVAWYKATYMQPQQQTDAAATKVAAAA 394
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BLAST of mRNA_H-canaliculatus_M_contigs8019.2.1 vs.
Match: NAD(P)-bd_dom (domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DEP6_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.560e-13
Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:    1 PEQPGDVPRTCADISKAHSMLGYSPRVAFSDGIRKTVDWYQDRAAMKAAEAAIDDE 168
            P+QPGDVPRTCA+ISKA  +LGY P+V+F +GI +TV+WY    A K+ EA  ++E
Sbjct:  426 PDQPGDVPRTCANISKAQELLGYQPKVSFEEGIARTVEWYTGWRAEKSMEAEKEEE 481
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs8019.2.1 vs.
Match: NAD(P)-bd_dom (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3G0_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 4.770e-13
Identity = 30/42 (71.43%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 PEQPGDVPRTCADISKAHSMLGYSPRVAFSDGIRKTVDWYQD 126
            PEQPGDVPRTCADISKA  +LGY PRV+F +GI +TV WY++
Sbjct:  400 PEQPGDVPRTCADISKARRLLGYEPRVSFEEGIARTVAWYKE 441
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BLAST of mRNA_H-canaliculatus_M_contigs8019.2.1 vs.
Match: Hypothetical (protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2E108_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.160e-12
Identity = 27/42 (64.29%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 PEQPGDVPRTCADISKAHSMLGYSPRVAFSDGIRKTVDWYQD 126
            P+QPGDVP TCAD+SKA  +LGYS +V+F +GI+KTV+WY +
Sbjct:   73 PDQPGDVPYTCADVSKAKRLLGYSSKVSFEEGIKKTVEWYNE 114
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8019.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
NAD(P)-bd_dom3.130e-2169.44domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Hypothetical6.880e-1560.78protein n=2 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Hypothetical1.300e-1461.54protein (Fragment) n=1 Tax=Rhizochromulina marina ... [more]
Hypothetical1.750e-1463.27protein n=1 Tax=Pelagomonas calceolata TaxID=35677... [more]
Hypothetical5.340e-1473.81protein n=1 Tax=Pelagomonas calceolata TaxID=35677... [more]
Hypothetical2.090e-1359.62protein n=1 Tax=Attheya septentrionalis TaxID=4202... [more]
NAD(P)-bd_dom2.350e-1359.68domain-containing protein n=1 Tax=Tribonema minus ... [more]
NAD(P)-bd_dom2.560e-1357.14domain-containing protein n=3 Tax=Monodopsidaceae ... [more]
NAD(P)-bd_dom4.770e-1371.43domain-containing protein n=1 Tax=Tribonema minus ... [more]
Hypothetical1.160e-1264.29protein n=1 Tax=Helicotheca tamesis TaxID=374047 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8019contigH-canaliculatus_M_contigs8019:4924..5118 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FK24
PFAMsEpimerase,GDP_Man_Dehyd
Model size195
Max annot lvl2759|Eukaryota
KEGG rclassRC00289
KEGG koko:K08679
KEGG ReactionR01385
KEGG Pathwayko00520,ko01100,map00520,map01100
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.82e-21
EggNOG OGsCOG1087@1|root,KOG1371@2759|Eukaryota
EC5.1.3.6
Descriptionracemase and epimerase activity, acting on carbohydrates and derivatives
Cds size195
COG categoryM
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854130.941906-CDS-H-canaliculatus_M_contigs8019:4923..51181696854130.941906-CDS-H-canaliculatus_M_contigs8019:4923..5118Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8019 4924..5118 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8019.2.1prot_H-canaliculatus_M_contigs8019.2.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8019 4924..5118 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8019.2.1

>prot_H-canaliculatus_M_contigs8019.2.1 ID=prot_H-canaliculatus_M_contigs8019.2.1|Name=mRNA_H-canaliculatus_M_contigs8019.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=65bp
PEQPGDVPRTCADISKAHSMLGYSPRVAFSDGIRKTVDWYQDRAAMKAAE
AAIDDEDAVIDEPVT
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mRNA from alignment at H-canaliculatus_M_contigs8019:4924..5118-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8019.2.1 ID=mRNA_H-canaliculatus_M_contigs8019.2.1|Name=mRNA_H-canaliculatus_M_contigs8019.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=195bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8019:4924..5118- (Hapterophycus canaliculatus Oshoro7m male)
CCCGAGCAGCCGGGAGACGTGCCTCGCACGTGCGCCGACATCTCGAAGGC
CCACTCCATGCTGGGCTACAGCCCCCGCGTGGCCTTCTCTGACGGCATCC
GGAAGACGGTGGACTGGTACCAGGACCGCGCGGCCATGAAGGCGGCAGAG
GCGGCTATTGATGACGAGGATGCAGTCATCGATGAGCCTGTCACG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8019:4924..5118-

>mRNA_H-canaliculatus_M_contigs8019.2.1 ID=mRNA_H-canaliculatus_M_contigs8019.2.1|Name=mRNA_H-canaliculatus_M_contigs8019.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=195bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8019:4924..5118- (Hapterophycus canaliculatus Oshoro7m male)
CCCGAGCAGCCGGGAGACGTGCCTCGCACGTGCGCCGACATCTCGAAGGC
CCACTCCATGCTGGGCTACAGCCCCCGCGTGGCCTTCTCTGACGGCATCC
GGAAGACGGTGGACTGGTACCAGGACCGCGCGGCCATGAAGGCGGCAGAG
GCGGCTATTGATGACGAGGATGCAGTCATCGATGAGCCTGTCACG
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