mRNA_H-canaliculatus_M_contigs8016.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8016.2.1
Unique NamemRNA_H-canaliculatus_M_contigs8016.2.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8016.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8016contigH-canaliculatus_M_contigs8016:1345..3812 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1037
Hectar predicted targeting categoryother localisation
Exons3
Cds size795
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854130.7913532-UTR-H-canaliculatus_M_contigs8016:1344..14731696854130.7913532-UTR-H-canaliculatus_M_contigs8016:1344..1473Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs8016 1345..1473 -
1696854130.8324168-UTR-H-canaliculatus_M_contigs8016:3699..38121696854130.8324168-UTR-H-canaliculatus_M_contigs8016:3699..3812Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs8016 3700..3812 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854130.802111-CDS-H-canaliculatus_M_contigs8016:1473..20011696854130.802111-CDS-H-canaliculatus_M_contigs8016:1473..2001Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8016 1474..2001 -
1696854130.8123994-CDS-H-canaliculatus_M_contigs8016:2839..29451696854130.8123994-CDS-H-canaliculatus_M_contigs8016:2839..2945Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8016 2840..2945 -
1696854130.8224711-CDS-H-canaliculatus_M_contigs8016:3538..36991696854130.8224711-CDS-H-canaliculatus_M_contigs8016:3538..3699Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8016 3539..3699 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8016.2.1prot_H-canaliculatus_M_contigs8016.2.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8016 1474..3699 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8016.2.1

>prot_H-canaliculatus_M_contigs8016.2.1 ID=prot_H-canaliculatus_M_contigs8016.2.1|Name=mRNA_H-canaliculatus_M_contigs8016.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=265bp
MMELESHNQGTANSLDQGYVGSLRGRGGNNRCRDLTKESLGVIFAEDSMH
MQFKRFASHLWVTNSTSMTTPVRIIAEYDFHNVIFCREQHFTTKQTIAFR
EIALSVFETAIVNGKLQPGEAFEAFTHRVLALAGAEEAGTNATGTIFMAA
KCGSPLPCKSGASAAASGETADPGQGGGSSDSASATGNSGVSDGVGDGEG
GESEFSVGDVGAITKFVAQGFYRNFKLYRMCFQHEQRCCRETRQVQVETP
LEIPPLHEGAESNS*
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mRNA from alignment at H-canaliculatus_M_contigs8016:1345..3812-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8016.2.1 ID=mRNA_H-canaliculatus_M_contigs8016.2.1|Name=mRNA_H-canaliculatus_M_contigs8016.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=2468bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8016:1345..3812- (Hapterophycus canaliculatus Oshoro7m male)
CAGAGAAATAGGAGACGGAAACATAGGAGGGATCTGGGACAAATTAGAGA
GTGATCGCGAGCACTCAAGCTGCACGGGTAGGGCTGGAGCAGTCGTGACA
GATTATTTTCGGCATGATGGAGTTGGAGAGTCACAATCAAGGCACCGCCA
ACTCTCTCGACCAAGGATATGTCGGGAGTCTGCGTGGTCGCGGCGGAAAC
AACAGATGTCGGGACTTGACGAAGGAAAGTCTGGGGGTGATATTTGCGGA
GGATAGCATGCATATGCAGTTCAAGTGAGCACTTTCGTCTGGAGTGTAGA
ATTTCGGCGCAGGATAGGTACTGTGGTCGCATTCTGTTCAACATCGGCAG
TACCGTAGTGAAACCGGTATTAAGCCTATGGTGCTACTTCTGTCTGTGCC
ATGTGTAGAAAGCATATGTGCTGTTGAACTCACAGAAAAGACTTGATTAC
GCAGCGCGCCGTAGTTTGGTTTGGAAATACCGCAATCACCCCAGCTGTGC
CAACAACTCCAAACGCAGGGCACAGCTCGCTACAGCAGCCCCATGTGGCT
TCAAGCCCGATCCTGACCATCTGGAACCCTGATCCGTTGGCAGTATAGCA
TCGCTCCCTTAGATGAAAGCTGCAAGCAGCGTTTGACAACTATCCGTGGC
CACACGGCAAGTCGCGCATTCCACCAGTCTTCGTATAAAAGCAAAATGTT
AATGCTGCTGGAAATGCTAATGCTGCTCCATGCGGTTTGTAAATCATGTT
CGCAGCTTCACGATGGGCGGCTGGTCCAGAGCGGCTCTCTAAATTATGGT
CACCTTGTGAAGTTGCAGATTTTAATAGGAGAAGGCCTACCGCCCAACAA
ACGTCGCCTTTGACCAGGCGTTTCGCGAGCCACTTGTGGGTGACTAACTC
TACGAGCATGACCACCCCGGTTAGAATCATCGCGGAGTACGATTTCCACA
ACGTCATCTTCTGCAGAGAGCAGGTAGACGAACAAACCCTGCGCTCGAGG
AAGCAGTTCAAGTGTAAATTTACAGTAGAAAAAGAGATAGGGCCTTGCAA
GTCGCCGAGCGCTGGCAGCGCTGGCACTTGGTAGAGCTATTTGTAATAAC
ACGACGAAAGTTGTTTCTGCCCCTTAGGATGATGACTTGAGTGATTTCGA
AGCCACCCGCTAACTTTCTCGACGTATAAGAAATAAACAGGGGTTCGTGC
TCCAGACGAAATACTTATCTCTCAAAGGTCTTTTGCTCTCAGCAAAAAGG
GAGGGATGATAATTGATGGCTAACACATCCCGGTGGGATCCGTCCTGAGT
CCTACGATGCCAACAGCGCTCTTTCGACAATACTTTCCCGGCCCTTACCC
ATTCACCCTTAGATATAGGTCTATCCCCATCTCTTCGAACCCCACGTGGA
ACGACGATGTTCCGTTAGTGCGCGATCCGGCCTACAAAACGCCAACGTAT
CGATATGTTCTCCGCTCGTAGTAACCGCCTGTGCAGTGCATGAAGGAACC
CTGTGCAAAGTTGAGGTCGACGATAATTGCGCCCGGAGAAAGTCTTCGGG
GACGAGCCGCATCTCTCTCAAGCATCAGGCAGGATACTTGTCGTCAGGAG
AAGATCGGCGACGGTCATGAAACTGGTACAACTGCTGAAGCAAACCCTAA
CTTTCAAAGTAGGAAAAGAAGCACGCCAATCCTTAAGACTACAGAGCATG
CTGCCAGTCGAGTGGACCATGAATAACTTTGACACCGTATGCTCAGTGGC
ATGCGATCGATGCACACCTATCCCTTGTACACCTGTCACCGACGTCGCGT
ATCATTCGCAGCACTTCACCACCAAGCAAACAATCGCTTTTCGTGAAATA
GCACTGAGCGTCTTCGAGACAGCCATTGTAAACGGCAAGCTTCAGCCCGG
TGAAGCATTCGAAGCATTCACCCACCGGGTTCTCGCGCTTGCCGGGGCAG
AGGAGGCGGGCACGAATGCGACCGGGACCATTTTCATGGCAGCAAAATGT
GGCAGCCCGCTTCCTTGCAAGAGTGGCGCTTCTGCGGCTGCGAGTGGAGA
AACGGCTGACCCTGGTCAAGGAGGTGGTAGCAGCGATAGTGCTTCGGCGA
CTGGGAATAGCGGAGTCAGTGATGGGGTAGGCGACGGCGAAGGCGGCGAG
TCGGAGTTTTCTGTGGGCGATGTCGGTGCAATCACGAAGTTCGTCGCGCA
GGGGTTCTACCGCAACTTTAAGCTGTACCGGATGTGCTTCCAGCACGAGC
AAAGATGTTGTCGAGAGACTAGGCAGGTTCAGGTGGAGACACCCCTTGAA
ATACCGCCACTGCACGAGGGGGCCGAATCCAACTCATAGAACGCGGCGAA
GTCGACGTCTGACTCACTCGACACGGTTGAAGACGAAGCGACTGTACGAC
GACTTCGGGGCCTGGCTCGTTCTCTTCCACGCATGCACCGTCCGCTGTTC
ATACTTTGAACCGAAAAT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8016:1345..3812-

>mRNA_H-canaliculatus_M_contigs8016.2.1 ID=mRNA_H-canaliculatus_M_contigs8016.2.1|Name=mRNA_H-canaliculatus_M_contigs8016.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=795bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8016:1345..3812- (Hapterophycus canaliculatus Oshoro7m male)
ATGATGGAGTTGGAGAGTCACAATCAAGGCACCGCCAACTCTCTCGACCA
AGGATATGTCGGGAGTCTGCGTGGTCGCGGCGGAAACAACAGATGTCGGG
ACTTGACGAAGGAAAGTCTGGGGGTGATATTTGCGGAGGATAGCATGCAT
ATGCAGTTCAAGCGTTTCGCGAGCCACTTGTGGGTGACTAACTCTACGAG
CATGACCACCCCGGTTAGAATCATCGCGGAGTACGATTTCCACAACGTCA
TCTTCTGCAGAGAGCAGCACTTCACCACCAAGCAAACAATCGCTTTTCGT
GAAATAGCACTGAGCGTCTTCGAGACAGCCATTGTAAACGGCAAGCTTCA
GCCCGGTGAAGCATTCGAAGCATTCACCCACCGGGTTCTCGCGCTTGCCG
GGGCAGAGGAGGCGGGCACGAATGCGACCGGGACCATTTTCATGGCAGCA
AAATGTGGCAGCCCGCTTCCTTGCAAGAGTGGCGCTTCTGCGGCTGCGAG
TGGAGAAACGGCTGACCCTGGTCAAGGAGGTGGTAGCAGCGATAGTGCTT
CGGCGACTGGGAATAGCGGAGTCAGTGATGGGGTAGGCGACGGCGAAGGC
GGCGAGTCGGAGTTTTCTGTGGGCGATGTCGGTGCAATCACGAAGTTCGT
CGCGCAGGGGTTCTACCGCAACTTTAAGCTGTACCGGATGTGCTTCCAGC
ACGAGCAAAGATGTTGTCGAGAGACTAGGCAGGTTCAGGTGGAGACACCC
CTTGAAATACCGCCACTGCACGAGGGGGCCGAATCCAACTCATAG
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