mRNA_H-canaliculatus_M_contigs8015.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8015.1.1
Unique NamemRNA_H-canaliculatus_M_contigs8015.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8015.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8015contigH-canaliculatus_M_contigs8015:3309..3814 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Model size508
Hectar predicted targeting categorysignal peptide
Exons1
Cds size429
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854130.7522032-UTR-H-canaliculatus_M_contigs8015:3308..33851696854130.7522032-UTR-H-canaliculatus_M_contigs8015:3308..3385Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs8015 3309..3385 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854130.7630746-CDS-H-canaliculatus_M_contigs8015:3385..38141696854130.7630746-CDS-H-canaliculatus_M_contigs8015:3385..3814Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8015 3386..3814 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8015.1.1prot_H-canaliculatus_M_contigs8015.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8015 3386..3814 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8015.1.1

>prot_H-canaliculatus_M_contigs8015.1.1 ID=prot_H-canaliculatus_M_contigs8015.1.1|Name=mRNA_H-canaliculatus_M_contigs8015.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=143bp
VSIFLVYFLCIVCGPLAGHRVHHVVVRHRLYRCQVASTGRWRARILVLCT
RKAPGVARRDWLSCVGEEEKRTTHLVRRSRSLEPCLVRKGFCILPPSGDG
VALYSHLRSYVVSRRSPRCLLRSCLMMRPRSVNTKQAKSWWE*
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mRNA from alignment at H-canaliculatus_M_contigs8015:3309..3814-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8015.1.1 ID=mRNA_H-canaliculatus_M_contigs8015.1.1|Name=mRNA_H-canaliculatus_M_contigs8015.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=506bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8015:3309..3814- (Hapterophycus canaliculatus Oshoro7m male)
GTCAGCATTTTTCTGGTTTATTTTTTATGTATTGTGTGTGGCCCCCTGGC
TGGACACCGTGTACACCATGTAGTGGTACGCCACCGTTTGTATCGTTGTC
AAGTCGCCTCCACCGGACGTTGGCGAGCTCGAATCCTCGTTCTTTGCACA
CGGAAAGCACCGGGAGTCGCGCGGCGGGATTGGCTTTCTTGTGTTGGGGA
AGAGGAGAAGCGAACAACTCACCTCGTCAGGAGAAGTCGAAGTCTAGAGC
CATGTCTTGTTCGGAAGGGTTTTTGTATTTTACCACCATCTGGTGATGGT
GTTGCTCTGTATTCTCATCTACGTTCCTATGTTGTTTCTCGCCGTTCGCC
GCGGTGCCTGCTACGCTCCTGCCTCATGATGAGACCGAGGAGCGTTAACA
CCAAGCAGGCCAAGAGCTGGTGGGAGTGACCTGTCTAACCTTAGGAATCC
GGTTTTTCTGTGTCCATGCGTGTGGGTAAAGCAAATAAAAATAAACGCTC
CCTCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8015:3309..3814-

>mRNA_H-canaliculatus_M_contigs8015.1.1 ID=mRNA_H-canaliculatus_M_contigs8015.1.1|Name=mRNA_H-canaliculatus_M_contigs8015.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=429bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8015:3309..3814- (Hapterophycus canaliculatus Oshoro7m male)
GTCAGCATTTTTCTGGTTTATTTTTTATGTATTGTGTGTGGCCCCCTGGC
TGGACACCGTGTACACCATGTAGTGGTACGCCACCGTTTGTATCGTTGTC
AAGTCGCCTCCACCGGACGTTGGCGAGCTCGAATCCTCGTTCTTTGCACA
CGGAAAGCACCGGGAGTCGCGCGGCGGGATTGGCTTTCTTGTGTTGGGGA
AGAGGAGAAGCGAACAACTCACCTCGTCAGGAGAAGTCGAAGTCTAGAGC
CATGTCTTGTTCGGAAGGGTTTTTGTATTTTACCACCATCTGGTGATGGT
GTTGCTCTGTATTCTCATCTACGTTCCTATGTTGTTTCTCGCCGTTCGCC
GCGGTGCCTGCTACGCTCCTGCCTCATGATGAGACCGAGGAGCGTTAACA
CCAAGCAGGCCAAGAGCTGGTGGGAGTGA
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