mRNA_H-canaliculatus_M_contigs8008.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8008.1.1
Unique NamemRNA_H-canaliculatus_M_contigs8008.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8008.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8008contigH-canaliculatus_M_contigs8008:2056..2478 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Model size319
Hectar predicted targeting categoryother localisation
Exons2
Cds size240
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854130.5651002-UTR-H-canaliculatus_M_contigs8008:2055..21161696854130.5651002-UTR-H-canaliculatus_M_contigs8008:2055..2116Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs8008 2056..2116 -
1696854130.6054764-UTR-H-canaliculatus_M_contigs8008:2460..24781696854130.6054764-UTR-H-canaliculatus_M_contigs8008:2460..2478Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs8008 2461..2478 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854130.578455-CDS-H-canaliculatus_M_contigs8008:2116..22481696854130.578455-CDS-H-canaliculatus_M_contigs8008:2116..2248Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8008 2117..2248 -
1696854130.5899796-CDS-H-canaliculatus_M_contigs8008:2352..24601696854130.5899796-CDS-H-canaliculatus_M_contigs8008:2352..2460Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8008 2353..2460 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8008.1.1prot_H-canaliculatus_M_contigs8008.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8008 2117..2460 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8008.1.1

>prot_H-canaliculatus_M_contigs8008.1.1 ID=prot_H-canaliculatus_M_contigs8008.1.1|Name=mRNA_H-canaliculatus_M_contigs8008.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=80bp
MIICRSTCVTSFLPFVPPSVLRLTLYGALSPCRLPNGETLSLQLKSDDVV
LLIFNIVKNLTIVDWRGILQSKPLYRPAA*
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mRNA from alignment at H-canaliculatus_M_contigs8008:2056..2478-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8008.1.1 ID=mRNA_H-canaliculatus_M_contigs8008.1.1|Name=mRNA_H-canaliculatus_M_contigs8008.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=423bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8008:2056..2478- (Hapterophycus canaliculatus Oshoro7m male)
CGGCATGTTCGATGTTCGATGATAATCTGTAGAAGCACATGCGTGACGTC
CTTTCTCCCGTTCGTCCCACCCTCCGTGTTGAGACTTACCCTATACGGGG
CTCTGTCTCCGTGTAGGCTCCCAAACGCGTGACCTCGGACATGACAAGCA
GCTTCTTCGGATTGATGAAGAACGGTTTTCGCACCTGACTCGACACATAG
TTTGAGCGATTCGACAAAAACCGCCATAAGGGGGAGACGCTTTCGCTCCA
GCTCAAGAGTGACGACGTTGTGTTGCTTATTTTCAATATCGTCAAAAACT
TGACTATCGTCGACTGGCGGGGGATACTCCAATCTAAGCCCCTGTACCGC
CCAGCAGCATAATCCCAGGCCGTCGTGGCCTCGATCCCCCTCCCCTCATC
GCCAAAAAAAGCCCCGGCGCACC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8008:2056..2478-

>mRNA_H-canaliculatus_M_contigs8008.1.1 ID=mRNA_H-canaliculatus_M_contigs8008.1.1|Name=mRNA_H-canaliculatus_M_contigs8008.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=240bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8008:2056..2478- (Hapterophycus canaliculatus Oshoro7m male)
ATGATAATCTGTAGAAGCACATGCGTGACGTCCTTTCTCCCGTTCGTCCC
ACCCTCCGTGTTGAGACTTACCCTATACGGGGCTCTGTCTCCGTGTAGGC
TCCCAAACGGGGAGACGCTTTCGCTCCAGCTCAAGAGTGACGACGTTGTG
TTGCTTATTTTCAATATCGTCAAAAACTTGACTATCGTCGACTGGCGGGG
GATACTCCAATCTAAGCCCCTGTACCGCCCAGCAGCATAA
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