mRNA_H-canaliculatus_M_contigs7998.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7998.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7998.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7998.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH47_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 2.700e-41
Identity = 76/113 (67.26%), Postives = 90/113 (79.65%), Query Frame = 3 
Query:  192 MEARLWTFEDIKDATKRHECYRNSNDPIRLYFYGVALEMSGQSASSSEKYVAFRLEARRRFKDLGSAAAHYAREAEMLRSSGDERSAEHYVNMARILRGPDPGLVRSSKTCVV 530
            MEARLWTF+DIKDA++RHE YR+S++PIR YFYGVAL+MSGQ   ++EKY AFR EA+R F D+ SAAAHYA E   LR  GDERS++HY NMARILRG  PG    SKTCV+
Sbjct:    1 MEARLWTFDDIKDASRRHEEYRHSDNPIRHYFYGVALDMSGQEEGATEKYDAFRAEAQRLFGDVESAAAHYAGEGLALR--GDERSSDHYANMARILRGSVPGAAGRSKTCVL 111
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7998.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized2.700e-4167.26protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7998contigH-canaliculatus_M_contigs7998:104..943 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Model size840
Hectar predicted targeting categoryother localisation
Exons1
Cds size426
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854129.604563-UTR-H-canaliculatus_M_contigs7998:103..2131696854129.604563-UTR-H-canaliculatus_M_contigs7998:103..213Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs7998 104..213 +
1696854129.6299376-UTR-H-canaliculatus_M_contigs7998:639..9431696854129.6299376-UTR-H-canaliculatus_M_contigs7998:639..943Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs7998 640..943 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854129.6169202-CDS-H-canaliculatus_M_contigs7998:213..6391696854129.6169202-CDS-H-canaliculatus_M_contigs7998:213..639Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7998 214..639 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7998.1.1prot_H-canaliculatus_M_contigs7998.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7998 214..639 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7998.1.1

>prot_H-canaliculatus_M_contigs7998.1.1 ID=prot_H-canaliculatus_M_contigs7998.1.1|Name=mRNA_H-canaliculatus_M_contigs7998.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=142bp
MRPRGKLLSHDETNTPSGAGQKRQSGSMEARLWTFEDIKDATKRHECYRN
SNDPIRLYFYGVALEMSGQSASSSEKYVAFRLEARRRFKDLGSAAAHYAR
EAEMLRSSGDERSAEHYVNMARILRGPDPGLVRSSKTCVVS*
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mRNA from alignment at H-canaliculatus_M_contigs7998:104..943+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7998.1.1 ID=mRNA_H-canaliculatus_M_contigs7998.1.1|Name=mRNA_H-canaliculatus_M_contigs7998.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=840bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7998:104..943+ (Hapterophycus canaliculatus Oshoro7m male)
CGCCGAAGCTCCACAGTACAAGAATGCGCATCGGAATCATGTTCGTCCGA
GCACTGAAGAGCAATGGTGAACAGGAAAAACCTCGCCTTTACAATTGTGG
TGGATTATAGATGCGCCCGAGAGGTAAATTGCTGTCGCACGACGAGACCA
ACACCCCCAGCGGAGCTGGACAGAAACGACAAAGTGGCAGCATGGAAGCC
CGACTGTGGACGTTTGAAGATATCAAGGACGCAACCAAGAGGCATGAGTG
TTACCGTAACTCCAACGATCCAATCCGCCTCTACTTCTACGGCGTTGCGT
TGGAGATGTCGGGGCAGTCAGCCAGCTCGAGCGAAAAGTACGTGGCTTTC
CGCTTGGAGGCTCGGCGAAGGTTTAAAGACCTTGGAAGTGCGGCAGCACA
CTACGCGAGGGAGGCCGAGATGCTCCGCAGCAGTGGTGACGAGCGAAGCG
CGGAGCACTACGTAAATATGGCGCGTATTCTCCGAGGGCCAGACCCTGGT
CTCGTCCGCAGTTCGAAGACTTGCGTCGTGTCGTAGTGTGGGGTGCAGCG
TGGTGTGGCTCCCGCAGAGCTGGGTACACCGTCGATCTGCGGTAGTAGAC
CATACAAAAGTGTCTTTTTGAAAGCCGGATCAAGCTGGTCTTGCTACAAG
TGCTTCCATCAACGAGGAGGGATCTAATCACTTTGCCGGGTGTTTTACGT
CATAACAATGAATGATTCCCTTCTTACCCAGGTCCAGGATAGGTAATATC
GTAGGTGTGATCATCATTGCCCTCTCATTGAAGACGCTCTTAAGACTTTA
AGACGATCATAAATGTCCGGTACTGCTTTCATATGCGCGG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7998:104..943+

>mRNA_H-canaliculatus_M_contigs7998.1.1 ID=mRNA_H-canaliculatus_M_contigs7998.1.1|Name=mRNA_H-canaliculatus_M_contigs7998.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=426bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7998:104..943+ (Hapterophycus canaliculatus Oshoro7m male)
ATGCGCCCGAGAGGTAAATTGCTGTCGCACGACGAGACCAACACCCCCAG
CGGAGCTGGACAGAAACGACAAAGTGGCAGCATGGAAGCCCGACTGTGGA
CGTTTGAAGATATCAAGGACGCAACCAAGAGGCATGAGTGTTACCGTAAC
TCCAACGATCCAATCCGCCTCTACTTCTACGGCGTTGCGTTGGAGATGTC
GGGGCAGTCAGCCAGCTCGAGCGAAAAGTACGTGGCTTTCCGCTTGGAGG
CTCGGCGAAGGTTTAAAGACCTTGGAAGTGCGGCAGCACACTACGCGAGG
GAGGCCGAGATGCTCCGCAGCAGTGGTGACGAGCGAAGCGCGGAGCACTA
CGTAAATATGGCGCGTATTCTCCGAGGGCCAGACCCTGGTCTCGTCCGCA
GTTCGAAGACTTGCGTCGTGTCGTAG
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