mRNA_H-canaliculatus_M_contigs7994.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7994.1.1 vs.
Match: Putative (LOV domain-containing protein n=2 Tax=Scytosiphon TaxID=27966 RepID=A0A126WYE1_SCYLO) HSP 1 Score: 245 bits (625), Expect = 1.550e-74 Identity = 123/129 (95.35%), Postives = 125/129 (96.90%), Query Frame = 1
Query: 1 FPDLSQGEALEPGVAMQKVQEEAETTLGMLAFDAFPRFLKSKYSKAVMEVLKTGSNPNEVAALEGAINTSESKQPGDADEWLNMFVSTAEFFPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGR 387
F + S+GE LEPGVAMQKVQEEAETTLGMLAFDAFPRFLKSKYSKAVME LKTGSNPNEVAALEGAINTSESKQPGDADEWLNMFVSTAEFFPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGR
Sbjct: 132 FANSSKGETLEPGVAMQKVQEEAETTLGMLAFDAFPRFLKSKYSKAVMEDLKTGSNPNEVAALEGAINTSESKQPGDADEWLNMFVSTAEFFPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGR 260
BLAST of mRNA_H-canaliculatus_M_contigs7994.1.1 vs.
Match: Helmchrome (putative blue light receptor for phototaxis n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQX8_ECTSI) HSP 1 Score: 246 bits (629), Expect = 2.900e-73 Identity = 124/129 (96.12%), Postives = 125/129 (96.90%), Query Frame = 1
Query: 1 FPDLSQGEALEPGVAMQKVQEEAETTLGMLAFDAFPRFLKSKYSKAVMEVLKTGSNPNEVAALEGAINTSESKQPGDADEWLNMFVSTAEFFPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGR 387
F + SQGE LEPGVAMQKVQEEAETTLGMLAFDAFPRFLKSKYSKAVME LKTGSNPNEVAALEGAINTSESKQPGDADEWLNMFVSTAEFFPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGR
Sbjct: 85 FANSSQGETLEPGVAMQKVQEEAETTLGMLAFDAFPRFLKSKYSKAVMEDLKTGSNPNEVAALEGAINTSESKQPGDADEWLNMFVSTAEFFPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGR 213
BLAST of mRNA_H-canaliculatus_M_contigs7994.1.1 vs.
Match: PAS/PAC (sensor hybrid histidine kinase putative blue light receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT73_9STRA) HSP 1 Score: 192 bits (487), Expect = 3.860e-54 Identity = 95/129 (73.64%), Postives = 108/129 (83.72%), Query Frame = 1
Query: 1 FPDLSQGEALEPGVAMQKVQEEAETTLGMLAFDAFPRFLKSKYSKAVMEVLKTGSNPNEVAALEGAINTSESKQPGDADEWLNMFVSTAEFFPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGR 387
+ + SQGE L+P AMQ+V EEAETTL MLAFDAFPRFL SKY VM+ L+ SNPNEVAALEGA+NT+ +K DAD+WLNMFVSTAE FPACIVISDMTIPGAPMV+IN EFT+ TGYTKE+AVGR
Sbjct: 85 YANQSQGEQLDPRTAMQRVMEEAETTLNMLAFDAFPRFLNSKYCATVMDELRRTSNPNEVAALEGALNTAGAKMAKDADDWLNMFVSTAESFPACIVISDMTIPGAPMVFINTEFTRVTGYTKEDAVGR 213
BLAST of mRNA_H-canaliculatus_M_contigs7994.1.1 vs.
Match: Putative (LOV domain-containing protein n=2 Tax=Scytosiphon TaxID=27966 RepID=A0A126X2E1_9PHAE) HSP 1 Score: 165 bits (417), Expect = 1.020e-44 Identity = 83/115 (72.17%), Postives = 97/115 (84.35%), Query Frame = 1
Query: 43 AMQKVQEEAETTLGMLAFDAFPRFLKSKYSKAVMEVLKTGSNPNEVAALEGAINTSESKQPGDADEWLNMFVSTAEFFPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGR 387
A+ V +EAE TL MLAFDAFPRFLKSKY +AVM+ +K S + +ALEGA++++ S P DAD+WLNMF+S+AE FPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGR
Sbjct: 564 AVTLVNDEAEKTLNMLAFDAFPRFLKSKYCQAVMDDIKKKSG-GDSSALEGALSSAGSNMPQDADDWLNMFISSAESFPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGR 677
BLAST of mRNA_H-canaliculatus_M_contigs7994.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UBY0_9STRA) HSP 1 Score: 164 bits (414), Expect = 1.580e-44 Identity = 81/123 (65.85%), Postives = 100/123 (81.30%), Query Frame = 1
Query: 19 GEALEPGVAMQKVQEEAETTLGMLAFDAFPRFLKSKYSKAVMEVLKTGSNPNEVAALEGAINTSESKQPGDADEWLNMFVSTAEFFPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGR 387
GEA +P +QK++EEA+ T+ M+AFDAFPRFL+SKY AVM+ LK S + +E A+N S +K P DAD+WLNMFVS+AE FPACIVISDMTIPGAPMVY+NGEF++TTGYTKEE+VGR
Sbjct: 137 GEA-DPNTVLQKLKEEADNTIKMMAFDAFPRFLRSKYCGAVMQQLKQ-SGSQDAGQIEAALNQSGAKMPQDADDWLNMFVSSAESFPACIVISDMTIPGAPMVYVNGEFSRTTGYTKEESVGR 257
BLAST of mRNA_H-canaliculatus_M_contigs7994.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UEB3_9STRA) HSP 1 Score: 163 bits (412), Expect = 4.810e-44 Identity = 78/122 (63.93%), Postives = 98/122 (80.33%), Query Frame = 1
Query: 22 EALEPGVAMQKVQEEAETTLGMLAFDAFPRFLKSKYSKAVMEVLKTGSNPNEVAALEGAINTSESKQPGDADEWLNMFVSTAEFFPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGR 387
E ++ G MQK++EEA++ + MLAFDAFPRFL+S+Y AVM+ L+T +E A+N S +K P DAD+WLNMFVS+AE FPACIVISDMTIPGAPMVY+NGEF++TTGYTKEE+VGR
Sbjct: 476 EGVDQGTVMQKIKEEADSIIKMLAFDAFPRFLRSRYCGAVMQQLRTNGGAG-AGEIEAALNQSGAKMPQDADDWLNMFVSSAESFPACIVISDMTIPGAPMVYVNGEFSRTTGYTKEESVGR 596
BLAST of mRNA_H-canaliculatus_M_contigs7994.1.1 vs.
Match: PAS (domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RNG8_9ARCH) HSP 1 Score: 102 bits (254), Expect = 1.820e-24 Identity = 47/63 (74.60%), Postives = 55/63 (87.30%), Query Frame = 1
Query: 199 INTSESKQPGDADEWLNMFVSTAEFFPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGR 387
+++ +SK P DAD+WLN+FVSTAE PACIVISDMTIPGAPMVY+N EF KTTGY KEEA+GR
Sbjct: 2 LSSVDSKVPQDADDWLNIFVSTAESLPACIVISDMTIPGAPMVYVNQEFCKTTGYGKEEAIGR 64
BLAST of mRNA_H-canaliculatus_M_contigs7994.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XSA2_DIALT) HSP 1 Score: 94.7 bits (234), Expect = 4.880e-20 Identity = 54/113 (47.79%), Postives = 77/113 (68.14%), Query Frame = 1
Query: 49 QKVQEEAETTLGMLAFDAFPRFLKSKYSKAVMEVLKTGSNPNEVAALEGAINTSESKQPGDADEWLNMFVSTAEFFPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGR 387
+ V+++A +LA D+FPRF+KSKY V+E + GS+ + + +G I S+ K P D + ++ FV+ AE FPACIVISDM+IPG PM +IN EF+K TGY+K +A GR
Sbjct: 3724 EAVEKKAREFYMVLANDSFPRFVKSKYCDPVVEAM-LGSD-SRMDGSKGLI-WSKYKVPADMEGFVYSFVAVAETFPACIVISDMSIPGNPMFFINQEFSKITGYSKSDAQGR 3833
BLAST of mRNA_H-canaliculatus_M_contigs7994.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WPW9_EMIHU) HSP 1 Score: 94.0 bits (232), Expect = 8.140e-20 Identity = 51/122 (41.80%), Postives = 72/122 (59.02%), Query Frame = 1
Query: 22 EALEPGVAMQKVQEEAETTLGMLAFDAFPRFLKSKYSKAVMEVLKTGSNPNEVAALEGAINTSESKQPGDADEWLNMFVSTAEFFPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGR 387
E +P A +V E+A+ LA +A P+F++SK K V+E + G+ ++V ++ + +E K P D WL FV A +PACIVISDMTIPG PM ++N EF + TGY E GR
Sbjct: 306 EPSDPASAFDQVCEQAKNATSALALEALPKFVQSKACKPVVEAMTAGA-ASKVRKMDDLL-WAEYKVPEDVAGWLYAFVGVAMTYPACIVISDMTIPGNPMCFVNSEFCRVTGYDLREVQGR 425
BLAST of mRNA_H-canaliculatus_M_contigs7994.1.1 vs.
Match: PAS (domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGV8_AURAN) HSP 1 Score: 85.9 bits (211), Expect = 4.590e-19 Identity = 38/55 (69.09%), Postives = 46/55 (83.64%), Query Frame = 1
Query: 223 PGDADEWLNMFVSTAEFFPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGR 387
P DADEWL+ F++ AE +PACIV+SDMTIPGAPMVY+N EF + T Y +EEAVGR
Sbjct: 3 PQDADEWLSSFITFAETWPACIVVSDMTIPGAPMVYVNPEFCRVTEYPREEAVGR 57 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7994.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs7994.1.1 >prot_H-canaliculatus_M_contigs7994.1.1 ID=prot_H-canaliculatus_M_contigs7994.1.1|Name=mRNA_H-canaliculatus_M_contigs7994.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=129bp FPDLSQGEALEPGVAMQKVQEEAETTLGMLAFDAFPRFLKSKYSKAVMEVback to top mRNA from alignment at H-canaliculatus_M_contigs7994:4410..5127+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs7994.1.1 ID=mRNA_H-canaliculatus_M_contigs7994.1.1|Name=mRNA_H-canaliculatus_M_contigs7994.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=718bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7994:4410..5127+ (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7994:4410..5127+ >mRNA_H-canaliculatus_M_contigs7994.1.1 ID=mRNA_H-canaliculatus_M_contigs7994.1.1|Name=mRNA_H-canaliculatus_M_contigs7994.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=387bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7994:4410..5127+ (Hapterophycus canaliculatus Oshoro7m male)back to top |