mRNA_H-canaliculatus_M_contigs7994.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7994.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7994.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7994.1.1 vs.
Match: Putative (LOV domain-containing protein n=2 Tax=Scytosiphon TaxID=27966 RepID=A0A126WYE1_SCYLO)

HSP 1 Score: 245 bits (625), Expect = 1.550e-74
Identity = 123/129 (95.35%), Postives = 125/129 (96.90%), Query Frame = 1
Query:    1 FPDLSQGEALEPGVAMQKVQEEAETTLGMLAFDAFPRFLKSKYSKAVMEVLKTGSNPNEVAALEGAINTSESKQPGDADEWLNMFVSTAEFFPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGR 387
            F + S+GE LEPGVAMQKVQEEAETTLGMLAFDAFPRFLKSKYSKAVME LKTGSNPNEVAALEGAINTSESKQPGDADEWLNMFVSTAEFFPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGR
Sbjct:  132 FANSSKGETLEPGVAMQKVQEEAETTLGMLAFDAFPRFLKSKYSKAVMEDLKTGSNPNEVAALEGAINTSESKQPGDADEWLNMFVSTAEFFPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGR 260          
BLAST of mRNA_H-canaliculatus_M_contigs7994.1.1 vs.
Match: Helmchrome (putative blue light receptor for phototaxis n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQX8_ECTSI)

HSP 1 Score: 246 bits (629), Expect = 2.900e-73
Identity = 124/129 (96.12%), Postives = 125/129 (96.90%), Query Frame = 1
Query:    1 FPDLSQGEALEPGVAMQKVQEEAETTLGMLAFDAFPRFLKSKYSKAVMEVLKTGSNPNEVAALEGAINTSESKQPGDADEWLNMFVSTAEFFPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGR 387
            F + SQGE LEPGVAMQKVQEEAETTLGMLAFDAFPRFLKSKYSKAVME LKTGSNPNEVAALEGAINTSESKQPGDADEWLNMFVSTAEFFPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGR
Sbjct:   85 FANSSQGETLEPGVAMQKVQEEAETTLGMLAFDAFPRFLKSKYSKAVMEDLKTGSNPNEVAALEGAINTSESKQPGDADEWLNMFVSTAEFFPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGR 213          
BLAST of mRNA_H-canaliculatus_M_contigs7994.1.1 vs.
Match: PAS/PAC (sensor hybrid histidine kinase putative blue light receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT73_9STRA)

HSP 1 Score: 192 bits (487), Expect = 3.860e-54
Identity = 95/129 (73.64%), Postives = 108/129 (83.72%), Query Frame = 1
Query:    1 FPDLSQGEALEPGVAMQKVQEEAETTLGMLAFDAFPRFLKSKYSKAVMEVLKTGSNPNEVAALEGAINTSESKQPGDADEWLNMFVSTAEFFPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGR 387
            + + SQGE L+P  AMQ+V EEAETTL MLAFDAFPRFL SKY   VM+ L+  SNPNEVAALEGA+NT+ +K   DAD+WLNMFVSTAE FPACIVISDMTIPGAPMV+IN EFT+ TGYTKE+AVGR
Sbjct:   85 YANQSQGEQLDPRTAMQRVMEEAETTLNMLAFDAFPRFLNSKYCATVMDELRRTSNPNEVAALEGALNTAGAKMAKDADDWLNMFVSTAESFPACIVISDMTIPGAPMVFINTEFTRVTGYTKEDAVGR 213          
BLAST of mRNA_H-canaliculatus_M_contigs7994.1.1 vs.
Match: Putative (LOV domain-containing protein n=2 Tax=Scytosiphon TaxID=27966 RepID=A0A126X2E1_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 1.020e-44
Identity = 83/115 (72.17%), Postives = 97/115 (84.35%), Query Frame = 1
Query:   43 AMQKVQEEAETTLGMLAFDAFPRFLKSKYSKAVMEVLKTGSNPNEVAALEGAINTSESKQPGDADEWLNMFVSTAEFFPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGR 387
            A+  V +EAE TL MLAFDAFPRFLKSKY +AVM+ +K  S   + +ALEGA++++ S  P DAD+WLNMF+S+AE FPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGR
Sbjct:  564 AVTLVNDEAEKTLNMLAFDAFPRFLKSKYCQAVMDDIKKKSG-GDSSALEGALSSAGSNMPQDADDWLNMFISSAESFPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGR 677          
BLAST of mRNA_H-canaliculatus_M_contigs7994.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UBY0_9STRA)

HSP 1 Score: 164 bits (414), Expect = 1.580e-44
Identity = 81/123 (65.85%), Postives = 100/123 (81.30%), Query Frame = 1
Query:   19 GEALEPGVAMQKVQEEAETTLGMLAFDAFPRFLKSKYSKAVMEVLKTGSNPNEVAALEGAINTSESKQPGDADEWLNMFVSTAEFFPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGR 387
            GEA +P   +QK++EEA+ T+ M+AFDAFPRFL+SKY  AVM+ LK  S   +   +E A+N S +K P DAD+WLNMFVS+AE FPACIVISDMTIPGAPMVY+NGEF++TTGYTKEE+VGR
Sbjct:  137 GEA-DPNTVLQKLKEEADNTIKMMAFDAFPRFLRSKYCGAVMQQLKQ-SGSQDAGQIEAALNQSGAKMPQDADDWLNMFVSSAESFPACIVISDMTIPGAPMVYVNGEFSRTTGYTKEESVGR 257          
BLAST of mRNA_H-canaliculatus_M_contigs7994.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UEB3_9STRA)

HSP 1 Score: 163 bits (412), Expect = 4.810e-44
Identity = 78/122 (63.93%), Postives = 98/122 (80.33%), Query Frame = 1
Query:   22 EALEPGVAMQKVQEEAETTLGMLAFDAFPRFLKSKYSKAVMEVLKTGSNPNEVAALEGAINTSESKQPGDADEWLNMFVSTAEFFPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGR 387
            E ++ G  MQK++EEA++ + MLAFDAFPRFL+S+Y  AVM+ L+T         +E A+N S +K P DAD+WLNMFVS+AE FPACIVISDMTIPGAPMVY+NGEF++TTGYTKEE+VGR
Sbjct:  476 EGVDQGTVMQKIKEEADSIIKMLAFDAFPRFLRSRYCGAVMQQLRTNGGAG-AGEIEAALNQSGAKMPQDADDWLNMFVSSAESFPACIVISDMTIPGAPMVYVNGEFSRTTGYTKEESVGR 596          
BLAST of mRNA_H-canaliculatus_M_contigs7994.1.1 vs.
Match: PAS (domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RNG8_9ARCH)

HSP 1 Score: 102 bits (254), Expect = 1.820e-24
Identity = 47/63 (74.60%), Postives = 55/63 (87.30%), Query Frame = 1
Query:  199 INTSESKQPGDADEWLNMFVSTAEFFPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGR 387
            +++ +SK P DAD+WLN+FVSTAE  PACIVISDMTIPGAPMVY+N EF KTTGY KEEA+GR
Sbjct:    2 LSSVDSKVPQDADDWLNIFVSTAESLPACIVISDMTIPGAPMVYVNQEFCKTTGYGKEEAIGR 64          
BLAST of mRNA_H-canaliculatus_M_contigs7994.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XSA2_DIALT)

HSP 1 Score: 94.7 bits (234), Expect = 4.880e-20
Identity = 54/113 (47.79%), Postives = 77/113 (68.14%), Query Frame = 1
Query:   49 QKVQEEAETTLGMLAFDAFPRFLKSKYSKAVMEVLKTGSNPNEVAALEGAINTSESKQPGDADEWLNMFVSTAEFFPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGR 387
            + V+++A     +LA D+FPRF+KSKY   V+E +  GS+ + +   +G I  S+ K P D + ++  FV+ AE FPACIVISDM+IPG PM +IN EF+K TGY+K +A GR
Sbjct: 3724 EAVEKKAREFYMVLANDSFPRFVKSKYCDPVVEAM-LGSD-SRMDGSKGLI-WSKYKVPADMEGFVYSFVAVAETFPACIVISDMSIPGNPMFFINQEFSKITGYSKSDAQGR 3833          
BLAST of mRNA_H-canaliculatus_M_contigs7994.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WPW9_EMIHU)

HSP 1 Score: 94.0 bits (232), Expect = 8.140e-20
Identity = 51/122 (41.80%), Postives = 72/122 (59.02%), Query Frame = 1
Query:   22 EALEPGVAMQKVQEEAETTLGMLAFDAFPRFLKSKYSKAVMEVLKTGSNPNEVAALEGAINTSESKQPGDADEWLNMFVSTAEFFPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGR 387
            E  +P  A  +V E+A+     LA +A P+F++SK  K V+E +  G+  ++V  ++  +  +E K P D   WL  FV  A  +PACIVISDMTIPG PM ++N EF + TGY   E  GR
Sbjct:  306 EPSDPASAFDQVCEQAKNATSALALEALPKFVQSKACKPVVEAMTAGA-ASKVRKMDDLL-WAEYKVPEDVAGWLYAFVGVAMTYPACIVISDMTIPGNPMCFVNSEFCRVTGYDLREVQGR 425          
BLAST of mRNA_H-canaliculatus_M_contigs7994.1.1 vs.
Match: PAS (domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGV8_AURAN)

HSP 1 Score: 85.9 bits (211), Expect = 4.590e-19
Identity = 38/55 (69.09%), Postives = 46/55 (83.64%), Query Frame = 1
Query:  223 PGDADEWLNMFVSTAEFFPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGR 387
            P DADEWL+ F++ AE +PACIV+SDMTIPGAPMVY+N EF + T Y +EEAVGR
Sbjct:    3 PQDADEWLSSFITFAETWPACIVVSDMTIPGAPMVYVNPEFCRVTEYPREEAVGR 57          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7994.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Putative1.550e-7495.35LOV domain-containing protein n=2 Tax=Scytosiphon ... [more]
Helmchrome2.900e-7396.12putative blue light receptor for phototaxis n=2 Ta... [more]
PAS/PAC3.860e-5473.64sensor hybrid histidine kinase putative blue light... [more]
Putative1.020e-4472.17LOV domain-containing protein n=2 Tax=Scytosiphon ... [more]
Hypothetical1.580e-4465.85protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=... [more]
Hypothetical4.810e-4463.93protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=... [more]
PAS1.820e-2474.60domain-containing protein n=1 Tax=archaeon TaxID=1... [more]
Uncharacterized4.880e-2047.79protein n=1 Tax=Diacronema lutheri TaxID=2081491 R... [more]
Hypothetical8.140e-2041.80protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID... [more]
PAS4.590e-1969.09domain-containing protein (Fragment) n=1 Tax=Aureo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7994contigH-canaliculatus_M_contigs7994:4410..5127 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FQX8
PFAMsPAS_9,RGS
Model size387
Max annot lvl2759|Eukaryota
KEGG koko:K20715
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.75e-74
EggNOG OGsCOG2202@1|root,2S3IW@2759|Eukaryota
EC2.7.11.1
DescriptionPAS domain
Cds size387
COG categoryT
BRITEko00000,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854129.3353133-CDS-H-canaliculatus_M_contigs7994:4409..45861696854129.3353133-CDS-H-canaliculatus_M_contigs7994:4409..4586Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7994 4410..4586 +
1696854129.3470757-CDS-H-canaliculatus_M_contigs7994:4917..51271696854129.3470757-CDS-H-canaliculatus_M_contigs7994:4917..5127Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7994 4918..5127 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7994.1.1prot_H-canaliculatus_M_contigs7994.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7994 4410..5127 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7994.1.1

>prot_H-canaliculatus_M_contigs7994.1.1 ID=prot_H-canaliculatus_M_contigs7994.1.1|Name=mRNA_H-canaliculatus_M_contigs7994.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=129bp
FPDLSQGEALEPGVAMQKVQEEAETTLGMLAFDAFPRFLKSKYSKAVMEV
LKTGSNPNEVAALEGAINTSESKQPGDADEWLNMFVSTAEFFPACIVISD
MTIPGAPMVYINGEFTKTTGYTKEEAVGR
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mRNA from alignment at H-canaliculatus_M_contigs7994:4410..5127+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7994.1.1 ID=mRNA_H-canaliculatus_M_contigs7994.1.1|Name=mRNA_H-canaliculatus_M_contigs7994.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=718bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7994:4410..5127+ (Hapterophycus canaliculatus Oshoro7m male)
TTTCCCGATTTATCACAGGGCGAAGCCCTCGAACCTGGTGTGGCGATGCA AAAAGTCCAGGAAGAAGCTGAAACTACTCTTGGGATGTTGGCATTCGACG CTTTCCCGCGATTTCTCAAGTCAAAATATAGCAAAGCCGTCATGGAGGTC CTCAAGACGGGGTCCAACCCTAATGAGGTGAACCATCGTTCTTGGAGGGT AATTCGAAACATGGACTTGGTTGATTTCCGCATGTCTAATTGCACGATAC AGCCCCCACATGCGTACTGCACAGGAGCACGTCATGAAACATTATATCTG TGTTTAATTGGTCTTTCGGCGTTGATCTTAAATTTTTGGGCGAGAATCCG AGCTGAAGAGGGGCTGGGAGGTGCGTGGACAACGTAGTTCAATGTGCCGT CCCCTACTAATCTCGCTCCGACCACAAGTATTAGGAGCAGGCCGAATGTA GCTCCAGAGCCTTTTCCAAGCAATAAATTTGGCTTTGCCTGTTCAATTAA TTGCACAGGTGGCTGCTCTCGAAGGAGCCATCAATACGTCAGAGTCGAAG CAACCTGGTGACGCGGACGAGTGGCTCAACATGTTTGTGTCCACCGCCGA GTTCTTCCCGGCGTGCATCGTCATATCCGACATGACCATCCCCGGCGCTC CCATGGTGTACATTAACGGAGAGTTCACTAAGACCACAGGATACACCAAG GAAGAGGCCGTCGGACGG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7994:4410..5127+

>mRNA_H-canaliculatus_M_contigs7994.1.1 ID=mRNA_H-canaliculatus_M_contigs7994.1.1|Name=mRNA_H-canaliculatus_M_contigs7994.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=387bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7994:4410..5127+ (Hapterophycus canaliculatus Oshoro7m male)
TTTCCCGATTTATCACAGGGCGAAGCCCTCGAACCTGGTGTGGCGATGCA
AAAAGTCCAGGAAGAAGCTGAAACTACTCTTGGGATGTTGGCATTCGACG
CTTTCCCGCGATTTCTCAAGTCAAAATATAGCAAAGCCGTCATGGAGGTC
CTCAAGACGGGGTCCAACCCTAATGAGGTGGCTGCTCTCGAAGGAGCCAT
CAATACGTCAGAGTCGAAGCAACCTGGTGACGCGGACGAGTGGCTCAACA
TGTTTGTGTCCACCGCCGAGTTCTTCCCGGCGTGCATCGTCATATCCGAC
ATGACCATCCCCGGCGCTCCCATGGTGTACATTAACGGAGAGTTCACTAA
GACCACAGGATACACCAAGGAAGAGGCCGTCGGACGG
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