mRNA_H-canaliculatus_M_contigs7992.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7992.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7992.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7992.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEU2_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 1.910e-22
Identity = 54/82 (65.85%), Postives = 67/82 (81.71%), Query Frame = 1 
Query:    1 VGTIFNLVDSLASGMVGMLCTAQSREAAFRRAQDSLKFIRRLAKERFISELGQEEPLSKETWSIGQQLLRIKATAHDRPQRS 246
            VGTIFNLVDSLA GMVG+L TAQSR AA  +AQ +LKF+RR+A+E F+S  G+EEPLSKE W IGQ++LR+KA    +P+RS
Sbjct:  691 VGTIFNLVDSLACGMVGVLVTAQSRRAALEKAQGALKFVRRMAREVFVSSSGKEEPLSKEMWCIGQEVLRLKAA---KPERS 769
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7992.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.910e-2265.85protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7992contigH-canaliculatus_M_contigs7992:848..1677 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Model size563
Hectar predicted targeting categoryother localisation
Exons2
Cds size303
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854129.1957283-UTR-H-canaliculatus_M_contigs7992:847..9731696854129.1957283-UTR-H-canaliculatus_M_contigs7992:847..973Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs7992 848..973 +
1696854129.2147403-UTR-H-canaliculatus_M_contigs7992:1240..13741696854129.2147403-UTR-H-canaliculatus_M_contigs7992:1240..1374Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs7992 1241..1374 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854129.2266622-CDS-H-canaliculatus_M_contigs7992:1374..16771696854129.2266622-CDS-H-canaliculatus_M_contigs7992:1374..1677Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7992 1375..1677 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7992.1.1prot_H-canaliculatus_M_contigs7992.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7992 1375..1677 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7992.1.1

>prot_H-canaliculatus_M_contigs7992.1.1 ID=prot_H-canaliculatus_M_contigs7992.1.1|Name=mRNA_H-canaliculatus_M_contigs7992.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=101bp
MRSMTSCHQYGLDDSRSNSARQLSAAIATQPTLYRCRVDTASGQGRARFS
FEPHLEENSLFVVCQICGRKEQLGPFVSDDGSPACRRLVDERAILSGLPS
*
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mRNA from alignment at H-canaliculatus_M_contigs7992:848..1677+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7992.1.1 ID=mRNA_H-canaliculatus_M_contigs7992.1.1|Name=mRNA_H-canaliculatus_M_contigs7992.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=830bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7992:848..1677+ (Hapterophycus canaliculatus Oshoro7m male)
GTCGGCACCATCTTCAATCTTGTGGACAGCCTCGCATCGGGAATGGTCGG
GATGCTTTGCACAGCGCAGTCCAGGGAGGCGGCTTTCAGAAGAGCGCAAG
ATTCTTTGAAGTTCATCAGACGTCTTGTGAGTTGAGGTTTCGACGATAAA
ACGGGCACGACTTTCACACGTTAGCGGCCGAAATGCGCCTCGTAAGTCGA
TGTCATGGTCAAGCGTGCCGTAAACTTCCCGTACCGATGCCGCGCTCCGC
AACCATATCACCGAGGGAGCCGGGTACGCTCTGTAGTGATTTCTTGCGAA
CATCTCTGAACCCTCTTGAATATCGGCTCTGGTCAACACGATGTTTTACA
GAGGCCTGCCTCGTGCGTGCGGTAATGCCTTGTCAACCGACAGGCAAAAG
AGCGCTTCATCTCAGAGCTGGGTCAAGAGGAGCCGCTGTCGAAAGAGACG
TGGTCAATCGGGCAGCAATTGCTGCGAATAAAGGCCACCGCACACGATAG
GCCGCAACGCAGCTAGTATCAGACATTATGCGGTCGATGACCTCATGTCA
CCAGTACGGTCTAGACGACTCGCGATCGAACAGCGCACGCCAATTGTCAG
CGGCCATAGCTACACAACCAACGCTGTACCGCTGCCGCGTCGATACCGCG
TCAGGGCAAGGGCGGGCACGTTTCAGTTTCGAGCCACATCTAGAGGAGAA
CAGTTTATTTGTGGTCTGTCAGATATGTGGAAGAAAGGAACAGCTGGGTC
CCTTTGTGTCCGACGACGGTTCACCTGCTTGCCGTCGGTTGGTCGACGAA
AGAGCAATTCTCTCGGGTCTGCCATCTTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7992:848..1677+

>mRNA_H-canaliculatus_M_contigs7992.1.1 ID=mRNA_H-canaliculatus_M_contigs7992.1.1|Name=mRNA_H-canaliculatus_M_contigs7992.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=303bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7992:848..1677+ (Hapterophycus canaliculatus Oshoro7m male)
ATGCGGTCGATGACCTCATGTCACCAGTACGGTCTAGACGACTCGCGATC
GAACAGCGCACGCCAATTGTCAGCGGCCATAGCTACACAACCAACGCTGT
ACCGCTGCCGCGTCGATACCGCGTCAGGGCAAGGGCGGGCACGTTTCAGT
TTCGAGCCACATCTAGAGGAGAACAGTTTATTTGTGGTCTGTCAGATATG
TGGAAGAAAGGAACAGCTGGGTCCCTTTGTGTCCGACGACGGTTCACCTG
CTTGCCGTCGGTTGGTCGACGAAAGAGCAATTCTCTCGGGTCTGCCATCT
TGA
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