mRNA_H-canaliculatus_M_contigs7949.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7949.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7949.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7949.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKJ2_ECTSI)

HSP 1 Score: 234 bits (596), Expect = 4.250e-68
Identity = 117/168 (69.64%), Postives = 135/168 (80.36%), Query Frame = 1
Query:    7 SLRKRVVECLASEGGGATGRRLVGYALGALRNLAARPGTKAVVRVFETPHPYKNKMNILWNVHLPGSVRIKIVFDPRSRTETNCDWVDII-QDPDKCAAXXXXXXEGGSRRPLNRRFHGREGRENFPGFGGRPPLWLEGDRFLARFQSDPTATDWGVRFTAYGVLGCD 507
            +L++ V E +ASEGGGA G RL G+ALGALRNLAA+P  KAV RVFETPHPY+N MN+ W+V+LP + RIK+VFDPRSRTET+CDWVDII QDPD  A            R L+ RFHG+ GRENFPGFGGR PLWLEG+RF+ARFQSDPTATDWGVRFTAYG+L CD
Sbjct:  937 TLKQHVGERVASEGGGAFGGRLTGHALGALRNLAAQPRIKAVARVFETPHPYQNNMNVEWDVYLPEAKRIKVVFDPRSRTETSCDWVDIILQDPDGAAVPSILS------RGLHHRFHGQGGRENFPGFGGRLPLWLEGNRFVARFQSDPTATDWGVRFTAYGILDCD 1098          
BLAST of mRNA_H-canaliculatus_M_contigs7949.1.1 vs.
Match: HECT (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQU0_9PHAE)

HSP 1 Score: 228 bits (582), Expect = 3.250e-66
Identity = 116/168 (69.05%), Postives = 132/168 (78.57%), Query Frame = 1
Query:    7 SLRKRVVECLASEGGGATGRRLVGYALGALRNLAARPGTKAVVRVFETPHPYKNKMNILWNVHLPGSVRIKIVFDPRSRTETNCDWVDII-QDPDKCAAXXXXXXEGGSRRPLNRRFHGREGRENFPGFGGRPPLWLEGDRFLARFQSDPTATDWGVRFTAYGVLGCD 507
            +L++ V E +ASEGGGA G  L G+ALGALR LAA+P  KAV RVFETPHPY+N MN+ W+V+LP + RIK+VFDPRSRTET+CDWVDII QDPD  A            R L  RFHGR GRENFPGFGGR PLWLEG+RF+ARFQSDPTATDWGVRFTAYG+L CD
Sbjct: 1481 TLKQHVGERIASEGGGAFGACLTGHALGALRTLAAQPRIKAVARVFETPHPYQNNMNVEWDVYLPEAKRIKVVFDPRSRTETSCDWVDIILQDPDGGAVPSNIS------RGLYHRFHGRGGRENFPGFGGRLPLWLEGNRFVARFQSDPTATDWGVRFTAYGILDCD 1642          
BLAST of mRNA_H-canaliculatus_M_contigs7949.1.1 vs.
Match: HECT (E3 ubiquitin ligase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZEJ2_9STRA)

HSP 1 Score: 124 bits (310), Expect = 1.250e-29
Identity = 68/167 (40.72%), Postives = 94/167 (56.29%), Query Frame = 1
Query:   10 LRKRVVECLASEGGGATGRRLVGYALGALRNLA-ARPGTKAVVRVFETPHPYKNKMNILWNVHLPGSVRIKIVFDPRSRTETNCDWVDIIQDPDKCAAXXXXXXEGGSRRPLNRRFHGREGRENFPGFGGRPPLWLEGDRFLARFQSDPTATDWGVRFTAYGVLGCD 507
            LR+R+ E +    G      +VGYA   LR    ++P  +A+VR  E+ HPY + M++ W V LPG+ RIK+VFDPRS+TE  CD++      D+                 + ++ GR G EN+PG GGRPPL ++ DRF   F SD +  DWG  FTAYG+L  D
Sbjct: 2874 LRRRLGELIHGPDGLRLLDGVVGYASHVLRTARDSQPKGRAIVRHLESSHPYSDNMDMYWKVELPGARRIKVVFDPRSKTEAGCDYLCFYSATDRAVTYG------------DTQYTGRGGAENWPGTGGRPPLLIDADRFEVYFHSDGSGNDWGFAFTAYGILADD 3028          
BLAST of mRNA_H-canaliculatus_M_contigs7949.1.1 vs.
Match: Aste57867_9009 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KLY7_9STRA)

HSP 1 Score: 116 bits (291), Expect = 4.470e-27
Identity = 58/147 (39.46%), Postives = 83/147 (56.46%), Query Frame = 1
Query:   70 LVGYALGALRN-LAARPGTKAVVRVFETPHPYKNKMNILWNVHLPGSVRIKIVFDPRSRTETNCDWVDIIQDPDKCAAXXXXXXEGGSRRPLNRRFHGREGRENFPGFGGRPPLWLEGDRFLARFQSDPTATDWGVRFTAYGVLGCD 507
            L+ YA   LR  + + P ++A+VR  E+ HPY + ++  W + +PG+ RIK+VFD RS+TE  CDW+      D+                   ++ GR G EN+PGFG RPPL +E DRF   F +D +  DWG  FTAYG++  D
Sbjct: 2872 LLAYATATLRRTMQSLPRSRAMVRSLESAHPYNDNVDTYWRIDMPGASRIKVVFDSRSKTEAGCDWMCFYAANDRTITYGET------------QYSGRGGSENWPGFGSRPPLIIESDRFEVYFHTDGSGNDWGWAFTAYGIVSDD 3006          
BLAST of mRNA_H-canaliculatus_M_contigs7949.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UKN3_9STRA)

HSP 1 Score: 115 bits (289), Expect = 8.300e-27
Identity = 55/125 (44.00%), Postives = 75/125 (60.00%), Query Frame = 1
Query:  124 KAVVRVFETPHPYKNKMNILWNVHLPGSVRIKIVFDPRSRTETNCDWVDIIQDPDKCAAXXXXXXEGGSRRPLNRRFHGREGRENFPGFGGRPPLWLEGDRFLARFQSDPTATDWGVRFTAYGVL 498
            +A+VR  E+PHPY + M++ W V +PG+  IK+VFD RS++E  CDW+      D+                 + ++ GR G EN+PGFG RPPL +E DRF   F SD + TDWG  FTAYGV+
Sbjct: 2946 RAMVRTVESPHPYHDNMDMYWRVDMPGAKHIKVVFDSRSKSEAGCDWLCFYAAGDRSITFG------------DAQYSGRGGTENWPGFGNRPPLVIESDRFEVYFHSDGSGTDWGWAFTAYGVV 3058          
BLAST of mRNA_H-canaliculatus_M_contigs7949.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X4Z1_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.130e-26
Identity = 53/131 (40.46%), Postives = 75/131 (57.25%), Query Frame = 1
Query:  115 PGTKAVVRVFETPHPYKNKMNILWNVHLPGSVRIKIVFDPRSRTETNCDWVDIIQDPDKCAAXXXXXXEGGSRRPLNRRFHGREGRENFPGFGGRPPLWLEGDRFLARFQSDPTATDWGVRFTAYGVLGCD 507
            P ++A+VR  E+PHPY +  +  W V +PG+ RIK+VFDP S+TE  CDW+      D+                   ++ GR G EN+PGFG RPPL ++ D F   F +D + TDWG  FTA+G++  D
Sbjct: 2867 PKSRAIVRTLESPHPYNDNTDAYWRVDMPGATRIKVVFDPLSKTEAGCDWLCFYSANDRSVTYGEA------------QYSGRGGSENWPGFGNRPPLIIDSDCFEVYFHTDGSGTDWGWAFTAFGIVSDD 2985          
BLAST of mRNA_H-canaliculatus_M_contigs7949.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DQ41_9STRA)

HSP 1 Score: 114 bits (286), Expect = 2.090e-26
Identity = 55/128 (42.97%), Postives = 74/128 (57.81%), Query Frame = 1
Query:  124 KAVVRVFETPHPYKNKMNILWNVHLPGSVRIKIVFDPRSRTETNCDWVDIIQDPDKCAAXXXXXXEGGSRRPLNRRFHGREGRENFPGFGGRPPLWLEGDRFLARFQSDPTATDWGVRFTAYGVLGCD 507
            +A+VR  E+PHPY +  +  W V++PG+  IKIVFD RS+TE  CDW+      D+                   ++ GR G EN+PGFG RPPL ++ DRF   F SD + TDWG  FTAYG++  D
Sbjct: 2432 RAMVRTLESPHPYTDNADTYWRVNMPGAKCIKIVFDSRSKTEAGCDWLCFYAATDRHVTYGEA------------QYSGRGGSENWPGFGNRPPLIIDSDRFEVYFHSDGSGTDWGWAFTAYGIVSSD 2547          
BLAST of mRNA_H-canaliculatus_M_contigs7949.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397CK74_9STRA)

HSP 1 Score: 114 bits (284), Expect = 3.750e-26
Identity = 55/128 (42.97%), Postives = 73/128 (57.03%), Query Frame = 1
Query:  124 KAVVRVFETPHPYKNKMNILWNVHLPGSVRIKIVFDPRSRTETNCDWVDIIQDPDKCAAXXXXXXEGGSRRPLNRRFHGREGRENFPGFGGRPPLWLEGDRFLARFQSDPTATDWGVRFTAYGVLGCD 507
            +A+VR  E+PHPY +  +  W V +PG+  IKIVFD RS+TE  CDW+      D+                   ++ GR G EN+PGFG RPPL ++ DRF   F SD + TDWG  FTAYG++  D
Sbjct: 1289 RAMVRTLESPHPYTDNADTYWRVDMPGAKCIKIVFDSRSKTEAGCDWLCFYAATDRHVTYGEA------------QYSGRGGSENWPGFGNRPPLIIDSDRFEVYFHSDGSGTDWGWAFTAYGIVSSD 1404          
BLAST of mRNA_H-canaliculatus_M_contigs7949.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A396ZTB4_9STRA)

HSP 1 Score: 114 bits (284), Expect = 3.800e-26
Identity = 55/128 (42.97%), Postives = 73/128 (57.03%), Query Frame = 1
Query:  124 KAVVRVFETPHPYKNKMNILWNVHLPGSVRIKIVFDPRSRTETNCDWVDIIQDPDKCAAXXXXXXEGGSRRPLNRRFHGREGRENFPGFGGRPPLWLEGDRFLARFQSDPTATDWGVRFTAYGVLGCD 507
            +A+VR  E+PHPY +  +  W V +PG+  IKIVFD RS+TE  CDW+      D+                   ++ GR G EN+PGFG RPPL ++ DRF   F SD + TDWG  FTAYG++  D
Sbjct: 2034 RAMVRTLESPHPYTDNADTYWRVDMPGAKCIKIVFDSRSKTEAGCDWLCFYAATDRHVTYGEA------------QYSGRGGSENWPGFGNRPPLIIDSDRFEVYFHSDGSGTDWGWAFTAYGIVSSD 2149          
BLAST of mRNA_H-canaliculatus_M_contigs7949.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6X948_9STRA)

HSP 1 Score: 114 bits (284), Expect = 3.830e-26
Identity = 55/128 (42.97%), Postives = 73/128 (57.03%), Query Frame = 1
Query:  124 KAVVRVFETPHPYKNKMNILWNVHLPGSVRIKIVFDPRSRTETNCDWVDIIQDPDKCAAXXXXXXEGGSRRPLNRRFHGREGRENFPGFGGRPPLWLEGDRFLARFQSDPTATDWGVRFTAYGVLGCD 507
            +A+VR  E+PHPY +  +  W V +PG+  IKIVFD RS+TE  CDW+      D+                   ++ GR G EN+PGFG RPPL ++ DRF   F SD + TDWG  FTAYG++  D
Sbjct: 1303 RAMVRTLESPHPYTDNADTYWRVDMPGAKCIKIVFDSRSKTEAGCDWLCFYAATDRHVTYGEA------------QYSGRGGSENWPGFGNRPPLIIDSDRFEVYFHSDGSGTDWGWAFTAYGIVSSD 1418          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7949.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized4.250e-6869.64protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
HECT3.250e-6669.05domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
HECT1.250e-2940.72E3 ubiquitin ligase n=1 Tax=Achlya hypogyna TaxID=... [more]
Aste57867_90094.470e-2739.46protein n=1 Tax=Aphanomyces stellatus TaxID=120398... [more]
Uncharacterized8.300e-2744.00protein n=1 Tax=Aphanomyces invadans TaxID=157072 ... [more]
Uncharacterized1.130e-2640.46protein n=1 Tax=Aphanomyces euteiches TaxID=100861... [more]
Uncharacterized2.090e-2642.97protein (Fragment) n=1 Tax=Aphanomyces astaci TaxI... [more]
Uncharacterized3.750e-2642.97protein (Fragment) n=1 Tax=Aphanomyces astaci TaxI... [more]
Uncharacterized3.800e-2642.97protein (Fragment) n=1 Tax=Aphanomyces astaci TaxI... [more]
Uncharacterized3.830e-2642.97protein (Fragment) n=1 Tax=Aphanomyces astaci TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7949contigH-canaliculatus_M_contigs7949:3243..4092 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FKJ2
PFAMsFHA,HECT,Kelch_1,Kelch_4,Laminin_G_3,MIB_HERC2,RCC1,SPRY,Vps62,zf-C3HC4_3
Model size507
Max annot lvl2759|Eukaryota
KEGG koko:K10614
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.97e-69
EggNOG OGsCOG5184@1|root,KOG2242@1|root,KOG1426@2759|Eukaryota,KOG2242@2759|Eukaryota
EC2.3.2.26
DescriptionRNA localization to chromatin
Cds size507
COG categoryL
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854126.9269013-CDS-H-canaliculatus_M_contigs7949:3242..35751696854126.9269013-CDS-H-canaliculatus_M_contigs7949:3242..3575Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7949 3243..3575 -
1696854126.9396846-CDS-H-canaliculatus_M_contigs7949:3918..40921696854126.9396846-CDS-H-canaliculatus_M_contigs7949:3918..4092Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7949 3919..4092 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7949.1.1prot_H-canaliculatus_M_contigs7949.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7949 3243..4092 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7949.1.1

>prot_H-canaliculatus_M_contigs7949.1.1 ID=prot_H-canaliculatus_M_contigs7949.1.1|Name=mRNA_H-canaliculatus_M_contigs7949.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=169bp
MASLRKRVVECLASEGGGATGRRLVGYALGALRNLAARPGTKAVVRVFET
PHPYKNKMNILWNVHLPGSVRIKIVFDPRSRTETNCDWVDIIQDPDKCAA
AAAAAAEGGSRRPLNRRFHGREGRENFPGFGGRPPLWLEGDRFLARFQSD
PTATDWGVRFTAYGVLGCD
back to top

mRNA from alignment at H-canaliculatus_M_contigs7949:3243..4092-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7949.1.1 ID=mRNA_H-canaliculatus_M_contigs7949.1.1|Name=mRNA_H-canaliculatus_M_contigs7949.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=850bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7949:3243..4092- (Hapterophycus canaliculatus Oshoro7m male)
ATGGCTTCGCTCAGGAAGCGTGTGGTAGAGTGCCTCGCGAGCGAAGGAGG CGGGGCAACCGGACGGCGCCTCGTTGGGTATGCTCTCGGCGCTCTGCGAA ACCTCGCGGCCCGGCCTGGGACGAAGGCCGTGGTCCGTGTCTTCGAAACA CCCCACCCGTACAAGAACAAGATGGTGAGGGCGCAAGATTACGACCGTGG CTCGATTGAGTGGACCGCGATACTGCTGCTGTCGCACGCTTCGACTGGCA GGCGCTGCGGCACAATCTTGTGCCACGAAGATATCTTGCGACCGTAGACC TAGTCGGTGGTGTGTGGCGCTGTGTTCTTCCCAGGCATGGATGTAACGCG AACTTGGTCGAGGGACCAAACTAAGGCGTTTTTTGGCGAAATCACGGTGC TTGCGTCCGTTCTGCTTGTCCCCAATCACACGCGAAGACCACAACACAGC ATGGCTGCCCGTCCCTGAAACGCTCGACGTGTCATTCCTTGTGCCCCGGC CCCCTCCTCGCGTGCAGAACATTCTGTGGAATGTGCACCTGCCAGGATCT GTGCGAATCAAGATCGTCTTCGACCCCCGCTCCCGCACAGAAACCAACTG CGACTGGGTGGACATCATCCAAGACCCTGACAAGTGCGCTGCTGCTGCTG CCGCCGCCGCCGAAGGAGGCTCTCGTCGGCCCCTGAACCGCCGCTTTCAC GGGCGCGAGGGCCGCGAAAACTTTCCTGGTTTCGGTGGCCGCCCGCCGCT TTGGCTCGAGGGGGACCGCTTTCTTGCTCGCTTCCAGAGCGACCCTACCG CCACCGACTGGGGGGTGCGCTTCACAGCCTATGGTGTCCTCGGTTGCGAC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7949:3243..4092-

>mRNA_H-canaliculatus_M_contigs7949.1.1 ID=mRNA_H-canaliculatus_M_contigs7949.1.1|Name=mRNA_H-canaliculatus_M_contigs7949.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=507bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7949:3243..4092- (Hapterophycus canaliculatus Oshoro7m male)
ATGGCTTCGCTCAGGAAGCGTGTGGTAGAGTGCCTCGCGAGCGAAGGAGG
CGGGGCAACCGGACGGCGCCTCGTTGGGTATGCTCTCGGCGCTCTGCGAA
ACCTCGCGGCCCGGCCTGGGACGAAGGCCGTGGTCCGTGTCTTCGAAACA
CCCCACCCGTACAAGAACAAGATGAACATTCTGTGGAATGTGCACCTGCC
AGGATCTGTGCGAATCAAGATCGTCTTCGACCCCCGCTCCCGCACAGAAA
CCAACTGCGACTGGGTGGACATCATCCAAGACCCTGACAAGTGCGCTGCT
GCTGCTGCCGCCGCCGCCGAAGGAGGCTCTCGTCGGCCCCTGAACCGCCG
CTTTCACGGGCGCGAGGGCCGCGAAAACTTTCCTGGTTTCGGTGGCCGCC
CGCCGCTTTGGCTCGAGGGGGACCGCTTTCTTGCTCGCTTCCAGAGCGAC
CCTACCGCCACCGACTGGGGGGTGCGCTTCACAGCCTATGGTGTCCTCGG
TTGCGAC
back to top