mRNA_H-canaliculatus_M_contigs7945.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7945.1.1 vs.
Match: Lycopene (beta-cyclase n=2 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A290WNI4_PETFA) HSP 1 Score: 187 bits (475), Expect = 1.690e-54 Identity = 101/122 (82.79%), Postives = 109/122 (89.34%), Query Frame = 1
Query: 1 GFLSGYPNLPHNELHQDWQSRFKFGFKFFFKLAPAVQFQLALAGALSGWQYGLIRAVSPLAEGEDAKDLLFDAEVEGIRAAAAMKADADAAVVAGSGAAGEGRPVVAG-GSEKKTKERELVA 363
GFLSGYPNLPHNELHQDWQSRFKFGF+FF KLAPAVQFQLALAGALSGW+YGLIRAV+PLAE EDAKDLLFDAEVEGIRAAAA+ A+AD+A AAG+G PV A GSE+KTKERELVA
Sbjct: 426 GFLSGYPNLPHNELHQDWQSRFKFGFQFFLKLAPAVQFQLALAGALSGWKYGLIRAVTPLAESEDAKDLLFDAEVEGIRAAAAVAAEADSAKAI---AAGKGGPVAASDGSERKTKERELVA 544
BLAST of mRNA_H-canaliculatus_M_contigs7945.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIL6_9PHAE) HSP 1 Score: 166 bits (419), Expect = 6.120e-46 Identity = 90/121 (74.38%), Postives = 99/121 (81.82%), Query Frame = 1
Query: 1 GFLSGYPNLPHNELHQDWQSRFKFGFKFFFKLAPAVQFQLALAGALSGWQYGLIRAVSPLAEGEDAKDLLFDAEVEGIRAAAAMKADADAAVVAGSGAAGEGRPVVAGGSEKKTKERELVA 363
GFLSGYPNLPHNELHQDWQSRFKFG +FFFKLAPAVQFQLALAGALSGW+YGLI+AV+PLAE E+AKDLLFDAEV+ IRAAA K DA SGA+ E PV A G +K+ KER L A
Sbjct: 497 GFLSGYPNLPHNELHQDWQSRFKFGLQFFFKLAPAVQFQLALAGALSGWKYGLIKAVTPLAEAEEAKDLLFDAEVDAIRAAAKAKGDA------ASGASAEKSPV-ADGKKKEEKERALAA 610
BLAST of mRNA_H-canaliculatus_M_contigs7945.1.1 vs.
Match: Lycopene (beta-cyclase n=1 Tax=Punctaria latifolia TaxID=90013 RepID=A0A290WNI6_9PHAE) HSP 1 Score: 152 bits (384), Expect = 2.600e-41 Identity = 84/121 (69.42%), Postives = 91/121 (75.21%), Query Frame = 1
Query: 1 GFLSGYPNLPHNELHQDWQSRFKFGFKFFFKLAPAVQFQLALAGALSGWQYGLIRAVSPLAEGEDAKDLLFDAEVEGIRAAAAMKADADAAVVAGSGAAGEGRPVVAGGSEKKTKERELVA 363
GFLSGYPNLPHNE+HQ WQ RF FG +FFFKLAPAVQFQLALAGALSGWQYGLI AV+PLAEGEDAKD LFD+E+EGIRAAAA KA AG V +GG +K KE L A
Sbjct: 426 GFLSGYPNLPHNEMHQTWQKRFNFGLQFFFKLAPAVQFQLALAGALSGWQYGLIAAVTPLAEGEDAKDRLFDSEIEGIRAAAAAKATE----------AGVSGNVASGG--EKAKEPALAA 534
BLAST of mRNA_H-canaliculatus_M_contigs7945.1.1 vs.
Match: Lycopene (beta-cyclase n=1 Tax=Saccharina sculpera TaxID=416830 RepID=A0A290WNK2_9PHAE) HSP 1 Score: 139 bits (351), Expect = 1.690e-36 Identity = 71/86 (82.56%), Postives = 75/86 (87.21%), Query Frame = 1
Query: 1 GFLSGYPNLPHNELHQDWQSRFKFGFKFFFKLAPAVQFQLALAGALSGWQYGLIRAVSPLAEGEDAKDLLFDAEVEGIRAAAAMKA 258
GFLSGYPNLP+NELHQ WQ RF FG +FFFKLAPAVQFQLALAGALSGWQYGLI AVSPLA EDAKDL FD+EVE IR+AAA A
Sbjct: 427 GFLSGYPNLPYNELHQTWQGRFGFGLQFFFKLAPAVQFQLALAGALSGWQYGLIAAVSPLAAVEDAKDLKFDSEVEAIRSAAATAA 512
BLAST of mRNA_H-canaliculatus_M_contigs7945.1.1 vs.
Match: Lycopene (beta-cyclase n=1 Tax=Undaria pinnatifida TaxID=74381 RepID=A0A290WNI7_UNDPI) HSP 1 Score: 135 bits (341), Expect = 4.380e-35 Identity = 69/86 (80.23%), Postives = 74/86 (86.05%), Query Frame = 1
Query: 1 GFLSGYPNLPHNELHQDWQSRFKFGFKFFFKLAPAVQFQLALAGALSGWQYGLIRAVSPLAEGEDAKDLLFDAEVEGIRAAAAMKA 258
GFLSGYPNLP+NELHQ WQ RF FG +FF KLAPAVQFQLALAGAL+GWQYGLI AVSPLA EDAKDL FD+EVE IR+AAA A
Sbjct: 429 GFLSGYPNLPYNELHQTWQGRFGFGVQFFLKLAPAVQFQLALAGALNGWQYGLISAVSPLAAVEDAKDLQFDSEVEAIRSAAATTA 514
BLAST of mRNA_H-canaliculatus_M_contigs7945.1.1 vs.
Match: Lycopene (beta-cyclase n=3 Tax=Sargassum TaxID=3015 RepID=A0A290WNK0_9PHAE) HSP 1 Score: 125 bits (315), Expect = 2.000e-31 Identity = 71/122 (58.20%), Postives = 83/122 (68.03%), Query Frame = 1
Query: 1 GFLSGYPNLPHNELHQDWQSRFKFGFKFFFKLAPAVQFQLALAGALSGWQYGLIRAVSPLAEGEDAKDLLFDAEVEGIRAAAAMKADADAAVVAGSGAAGEGRPVVAGGSEK--KTKERELV 360
GFLSGYPNLPHNELHQDWQ R FGF+FF KL P VQ QL AG L+GW+YGLIR+VSPLA GE+AKDL F E E IRAAA + D+ + G A + P G ++ T E+ELV
Sbjct: 423 GFLSGYPNLPHNELHQDWQGRLGFGFQFFLKLPPLVQLQLMKAGVLNGWRYGLIRSVSPLASGEEAKDLRFADEAESIRAAA-IAVDSASGAPPALGVASDMAPSDRGSLQEGGTTDEKELV 543
BLAST of mRNA_H-canaliculatus_M_contigs7945.1.1 vs.
Match: Lycopene (beta-cyclase n=1 Tax=Dictyopteris undulata TaxID=156997 RepID=A0A290WNJ9_9PHAE) HSP 1 Score: 124 bits (310), Expect = 1.100e-30 Identity = 71/126 (56.35%), Postives = 85/126 (67.46%), Query Frame = 1
Query: 1 GFLSGYPNLPHNELHQDWQSRFKFGFKFFFKLAPAVQFQLALAGALSGWQYGLIRAVSPLAEGEDAKDLLFDAEVEGIRAAAAMKADADAAVVAGSGAAGEG-----RPVVAGGSEKKTKERELVA 363
GFLSGYPNLP+NE HQDWQ RF FG +FFFKL PAVQ +LALAGA +GW++GL++AV+PLAE +A + FDAE+E IR AA DA G GA G+G VAG E TKE V+
Sbjct: 428 GFLSGYPNLPYNERHQDWQGRFSFGVQFFFKLPPAVQLKLALAGAANGWKHGLLQAVTPLAESAEAVESGFDAEIEAIRRAA------DAKTTGGDGADGDGGKEGETQAVAGRVEGGTKELTSVS 547
BLAST of mRNA_H-canaliculatus_M_contigs7945.1.1 vs.
Match: Lycopene (beta-cyclase n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A290WNJ8_9PHAE) HSP 1 Score: 115 bits (287), Expect = 1.670e-27 Identity = 60/92 (65.22%), Postives = 73/92 (79.35%), Query Frame = 1
Query: 1 GFLSGYPNLPHNELHQDWQSRFKFGFKFFFKLAPAVQFQLALAGALSGWQYGLIRAVSPLAEGEDAKDLLFDAEVEGIRAAAAMKADADAAV 276
GFLSGYPNLPHNE Q+W RF FGF+FF KLAPAVQ +L AGAL+GW+ GLIR+VSP++ ED++DL FDAE+E IR AA +AD+AV
Sbjct: 425 GFLSGYPNLPHNEHQQEWYKRFAFGFQFFLKLAPAVQLKLMAAGALNGWRDGLIRSVSPMSILEDSQDLGFDAEIEAIRLKAAAT-EADSAV 515
BLAST of mRNA_H-canaliculatus_M_contigs7945.1.1 vs.
Match: Lycopene (beta cyclase chloroplast n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM92_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 9.180e-11 Identity = 32/72 (44.44%), Postives = 45/72 (62.50%), Query Frame = 1
Query: 1 GFLSGYPNLPHNELHQDWQSRFKFGFKFFFKLAPAVQFQLALAGALSGWQYGLIRAVSPLAEGEDAKDLLFD 216
GFLSGYP LPHNE+HQ W RF FG + + V+ LA+ +G Q GL+++V+PL++ E KD +
Sbjct: 419 GFLSGYPGLPHNEMHQSWGQRFLFGVQLWLYAPVPVKVALAVDAIKTGLQLGLVKSVTPLSDAEYDKDAALE 490 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7945.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs7945.1.1 >prot_H-canaliculatus_M_contigs7945.1.1 ID=prot_H-canaliculatus_M_contigs7945.1.1|Name=mRNA_H-canaliculatus_M_contigs7945.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=122bp GFLSGYPNLPHNELHQDWQSRFKFGFKFFFKLAPAVQFQLALAGALSGWQback to top mRNA from alignment at H-canaliculatus_M_contigs7945:4..973+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs7945.1.1 ID=mRNA_H-canaliculatus_M_contigs7945.1.1|Name=mRNA_H-canaliculatus_M_contigs7945.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=970bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7945:4..973+ (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7945:4..973+ >mRNA_H-canaliculatus_M_contigs7945.1.1 ID=mRNA_H-canaliculatus_M_contigs7945.1.1|Name=mRNA_H-canaliculatus_M_contigs7945.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=366bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7945:4..973+ (Hapterophycus canaliculatus Oshoro7m male)back to top |