mRNA_H-canaliculatus_M_contigs7940.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7940.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7940.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7940.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK09_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 2.680e-50
Identity = 114/182 (62.64%), Postives = 135/182 (74.18%), Query Frame = 1 
Query:    1 PRASRVQVALSGRCKGKPEDIEQIFLTEAVQAIAAGDAKRLGEFLEAGVDASSKYGGLSAGRR-----RGGESCQGDGEEEEEQTGGSGVGRWGG-GEALEDVSMFVEGLREAIVELTAESEELEKELSRRGTLSIIKRARATRQDLILAASEVETANALCDQWRAEEEAAAKENVQLQVCV 528
            P  +  QVALSG CKG PE+I+QIFLTEAVQAIA GDA+RLGEFL+AGV+ASS+YG            RGG    G    EE +  GS V   GG G A +DV +FV  LREAIV+LTAESEELE+EL+ RGT  IIKRAR TRQDLILA+SEV+TANALCD+WRAEE+AA+++N +LQ  V
Sbjct:  117 PNLTAYQVALSGGCKGNPEEIKQIFLTEAVQAIAEGDAERLGEFLDAGVEASSEYGADGGNPNAETSARGGMGETGPHGAEEAEAEGSRVWDDGGRGAAADDVGLFVGELREAIVDLTAESEELEEELAHRGTFGIIKRARQTRQDLILASSEVDTANALCDKWRAEEDAASEDNARLQAQV 298
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7940.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized2.680e-5062.64protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK09... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7940contigH-canaliculatus_M_contigs7940:356..4045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Model size528
Hectar predicted targeting categoryother localisation
Exons5
Cds size528
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854126.5204616-CDS-H-canaliculatus_M_contigs7940:355..4481696854126.5204616-CDS-H-canaliculatus_M_contigs7940:355..448Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7940 356..448 +
1696854126.5326452-CDS-H-canaliculatus_M_contigs7940:1346..14211696854126.5326452-CDS-H-canaliculatus_M_contigs7940:1346..1421Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7940 1347..1421 +
1696854126.5446434-CDS-H-canaliculatus_M_contigs7940:2520..26671696854126.5446434-CDS-H-canaliculatus_M_contigs7940:2520..2667Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7940 2521..2667 +
1696854126.5584779-CDS-H-canaliculatus_M_contigs7940:3376..34571696854126.5584779-CDS-H-canaliculatus_M_contigs7940:3376..3457Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7940 3377..3457 +
1696854126.5764575-CDS-H-canaliculatus_M_contigs7940:3913..40451696854126.5764575-CDS-H-canaliculatus_M_contigs7940:3913..4045Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7940 3914..4045 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7940.1.1prot_H-canaliculatus_M_contigs7940.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7940 356..4045 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7940.1.1

>prot_H-canaliculatus_M_contigs7940.1.1 ID=prot_H-canaliculatus_M_contigs7940.1.1|Name=mRNA_H-canaliculatus_M_contigs7940.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=176bp
PRASRVQVALSGRCKGKPEDIEQIFLTEAVQAIAAGDAKRLGEFLEAGVD
ASSKYGGLSAGRRRGGESCQGDGEEEEEQTGGSGVGRWGGGEALEDVSMF
VEGLREAIVELTAESEELEKELSRRGTLSIIKRARATRQDLILAASEVET
ANALCDQWRAEEEAAAKENVQLQVCV
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mRNA from alignment at H-canaliculatus_M_contigs7940:356..4045+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7940.1.1 ID=mRNA_H-canaliculatus_M_contigs7940.1.1|Name=mRNA_H-canaliculatus_M_contigs7940.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=3690bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7940:356..4045+ (Hapterophycus canaliculatus Oshoro7m male)
CCGCGTGCCTCGCGTGTGCAGGTCGCTCTCTCGGGCCGTTGCAAGGGGAA
ACCGGAAGACATCGAGCAAATTTTTCTGACGGAGGCGGTGCAGGTGAGCG
AGTAAAACGCTAGCAGACGACCGCCTCCCGCCCCCCCCCGCCGCCGCCGT
ACTCGATACGAAGAGATGCGTGAGTGGTTGCAACACGCATGGTCTCGCCG
AAGACGAACAGGTCGAGACGAGTAAGATAAGTACTCGCAAGAGAGGCGAG
CACGCGAAGGTACTGTCCCGTTGCTGGCTGTTTCCCTGCGCAGAGCAGGA
AAAAATGACTCTGGCTCCCTCTCGATGCATCCCCAACCAAACGTGTGGCC
GGCGGTCAATGTCCAGACGGCTGAGGCAAAGCCCACCCCTCCAACCCTTA
GAATGACTCACTCAGTAGAATTATGAGCACCCTTTAATTCCTTTTTTTGA
CACGGGCCGAGGTCCTCAACCTTCGGTCTGCCCTGCCAGTGCTTATGCCC
CCCCCTCGCTCTAGCCGCAAGCTCGCGTGGGTCTGTTCCAGTTGTCTTTC
GCAGGTTATCACATACTCCGGAGTAGCTATTTCCTATTTTCTACTTTTGC
ACCAAGAGGTCTTTGCTGTACGGCTTCCTCTTCCTTTTGGGACGGGTGAC
CGCGTCTGAGAATCCCGGTGCTTCCCGCAGTTCAATCGGTCGACGTCGCG
TAGCTGGCGCCATGTTCCCAATCTTGTTTTTAAAGAAAACATAACAACAC
CGTTAGAACACCTCCTGAGGTACGTCGTGTTTTGTTCCTTCCCTGCGAAA
TCGGAAATATCCGAGGTTGCCAATAGGATGTGCGTGACTCGAGACCTAGC
TTGACCCAACAGCGTTTTAGGCACCTGACTACATCGCTTCGGTGTGTCAA
GTGTTGTCCGATCCGCTCAACACATTCACTGCTTGTTCCTTGCTTCCTGC
TTCCTGCTGCCTGCTGCCGCCGCTCCTATATGCCACGCAAGGCCATCGCT
GCAGGAGACGCGAAGAGGCTGGGGGAGTTCTTGGAGGCTGGGGTGGACGC
GTCGTCCAAGTACGGCGTGGAGGGAGAGTGAGTTCTCCGGTAGCTCCCCG
CAGGGATCACCATCCCGCAGGGGTCACCACCTTTGTTTTTCACCTGATCG
CCGCCCGAGCGCAGTGTAGACGAGAGAGGAACCATCGGTTGTGATTTCGC
TCGCTCTCCAGGGGTAGCGCGGATCGGCGCGAGCGAGGGGTGAGGGGGGG
GCACCGTAGTGACCCTTTCGGAGCGTTTCGCTTTCCTTGTTTTGCCCGCC
TGATGCTCGACGGCTGATAGGTGGGGAGCTCCTTCTCGGAACGGACGCCG
CTAGCAACTTGCGGGGGTTTTGTTATCGTCGTGAATCTTGGTATTTATCG
GGGCGTGCGTACCATCAGTATTTCCTTGGTTGGCAAGGGGGGCGGGGAGC
GAGAGGACGTGATCCGGTTGTCATCTCACCGCCCCCTGCACACAGGTGCA
CGCGTGGTCGGGGTCTAGAGAAGCAGTTGTGCCGAAAGAGAGACAGAGAC
AGAGACAGAGACAGAGACAGAGACAGAGACAGAGACAGCGGCGGATATGG
AGTAGGAGGGCGGGGCGGCGGCGGCAGTCGATACGTAGGCTTACATGCAG
CACTCTCGTACCTTCGCCGCGAACGCGAGGGCGTGCGTGCCTCGATGCTC
ACGATTCGGGGTCCACTTCTTGACGCACGCATCCGCGCGGCGGCATCGCA
CCGCGTACGCGCCGTCTCCGGGACCGCGTCTTTGCTCTCTGGGTCTTATC
GCCCTCCGTTCTGTCTGATCTACGAAAGCCGCTCACGGCAAGCGTGCGCG
TGCGCCCGCAAGCGTTCCTTTTTCCCGGCGCACCGTGGTTTCGTGGCCCC
GCCACCACCACCACCTCCGCACCCGCGCCCGCGTCCACCTCGCACGCCCG
GTCCCTGCCTTCTTATCTTCAGGACCACGGAAGGAAGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGCAGGTAGCATGTCTCTGGCGGATTGGGCAGA
ACAGCTCGGGCAGGGGGATATGCTCTCCGCCCTGTGCGCTCCACCCAGCA
GCGAAAACGGCGAGAGTGGAACGACCCAACTTCCAGGCAATGATGCTGGC
GGTCAGGTCGAGGAGGGGTTGTCCGCGGGGCGCAGGCGAGGAGGGGAATC
CTGCCAGGGAGATGGGGAAGAGGAGGAGGAGCAGACAGGAGGGTCCGGCG
TAGGGCGTTGGGGTGGCGGCGAGGCGCTTGAAGACGTCAGCATGTTCGTG
GAAGGCTTGAGGGTGAGTGTTACTATTGACGTTGCTGTTGCTGTTGCTGT
TGCCACTGTTGTTGCTGGGACTGGGGCTGGGGCTGTCGCTGTTGTTGTCG
CTGTAGCTGTAGCTCTTGCTTTTGGTGGTGTTCTTGTTGCTGTTGGTGGT
GGTCTCGTTCCCGTTGCTGTGGCTGTGGCTGTGGCTGTGGCTGTGGCAGC
TCTCTTGCTTCTTTCTCTTTCTCGTTCGCGGCGTTTTTCCTTGATGCCGG
CATTCAATCCTACGATGTGGGAACTCGCTTCGGCACCTTCCGTGGTCGGC
GTGGTCCTCCCCCTCCATCCGTACCGCCGCCGCCACCGCCGCCGCCGCCG
CCGCCGCCCCGCACCCACGGTCCCACACGGCCGTTATAACCTCACCTTCT
GGTTGGTGGAGCGCCAAATTCGCGGCTCTCTGATCGCCCGGGGAAGAGCC
GCCGGGCCCCGATCGTGGCACATCCCTTGCGGGCCGCGCATGGGACGAAT
CCCGTCTTGCGATGTAGAGCCGCCTACCAAAGCCTGCGTGCCGCGCCACG
CCCAGATTCATTCCTGCAGCCATGAGCCGCAGGCGTAGACATTTCCTGAC
ATTCCGACAGAATAGGATGAGGGTGGGGAACACACGTCGCAAGAAGGGCG
TGACCGTATCGCGCCACCATCCCTCACACTCGCTGGTTCCCCCTTGACCT
CGCTGATGCCCAAATCCGCAGGAGGCGATAGTCGAGCTCACAGCCGAGAG
CGAGGAGCTAGAGAAGGAGCTGTCGCGTAGAGGCACCCTCAGCATAATCA
AGGTTCGGTTGCTCGCCTTCTTTTCTCCTTTCACGGATGGAAAAGTGGGC
CAATCCGAAGGGAGAATCTTCGGAGCGACGCCTCGGCAGGCGTTTCGGGA
GGCTCGTGTAGACCTCCTTTCACAGCGAGGGATCAACCCATTGGGCGGCG
TAAAACTGCGAACAGGAGTAGAGGGCCGTGAGACTCGGTAGCCACGTGCT
CCTCGACCCCGCTCCCCCTTCGCTGGAGTCAGAGGCGCGCGCAGCACGCA
CGAAGGGGATTTCGCCTCGAGTGGCAGGCGGTAAGGCGGACATAACGCCT
CGTCCCTGCTGAAAGGATACGCCTTATAGAAGACGCTTCTCCCCTTAAGA
CACCAGTAGTGCACCCACACGCTTAACCTTCTCCGCTCCGCCCGCCGGGG
TCATCGCAAACGCGGTTTCGCCGACCTTGCTCGATCGCCCTGGTGTTCGA
CCCTGCAGCGAGCTCGTGCTACTCGTCAGGACTTGATCCTCGCCGCCAGC
GAGGTCGAGACTGCCAACGCCCTGTGCGACCAGTGGAGAGCTGAAGAAGA
GGCTGCCGCGAAAGAGAACGTGCAGTTGCAGGTGTGTGTT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7940:356..4045+

>mRNA_H-canaliculatus_M_contigs7940.1.1 ID=mRNA_H-canaliculatus_M_contigs7940.1.1|Name=mRNA_H-canaliculatus_M_contigs7940.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=528bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7940:356..4045+ (Hapterophycus canaliculatus Oshoro7m male)
CCGCGTGCCTCGCGTGTGCAGGTCGCTCTCTCGGGCCGTTGCAAGGGGAA
ACCGGAAGACATCGAGCAAATTTTTCTGACGGAGGCGGTGCAGGCCATCG
CTGCAGGAGACGCGAAGAGGCTGGGGGAGTTCTTGGAGGCTGGGGTGGAC
GCGTCGTCCAAGTACGGCGGGTTGTCCGCGGGGCGCAGGCGAGGAGGGGA
ATCCTGCCAGGGAGATGGGGAAGAGGAGGAGGAGCAGACAGGAGGGTCCG
GCGTAGGGCGTTGGGGTGGCGGCGAGGCGCTTGAAGACGTCAGCATGTTC
GTGGAAGGCTTGAGGGAGGCGATAGTCGAGCTCACAGCCGAGAGCGAGGA
GCTAGAGAAGGAGCTGTCGCGTAGAGGCACCCTCAGCATAATCAAGCGAG
CTCGTGCTACTCGTCAGGACTTGATCCTCGCCGCCAGCGAGGTCGAGACT
GCCAACGCCCTGTGCGACCAGTGGAGAGCTGAAGAAGAGGCTGCCGCGAA
AGAGAACGTGCAGTTGCAGGTGTGTGTT
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