mRNA_H-canaliculatus_M_contigs7925.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7925.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7925.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7925.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNL8_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 9.900e-36
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 1
Query:    1 RENKLFVGMLPHDADDMTLTGVFSGFGEITEIYCMRNPDGTPKGCAFVKFSTRAAAVAAIEALHEKCTLE 210
            RENKLFVGMLPHDADDMTLT VFS FGEITEIYCMRNPDGTPKGCAFVKFSTR+AA+AAIEALHEKCT++
Sbjct:   70 RENKLFVGMLPHDADDMTLTEVFSRFGEITEIYCMRNPDGTPKGCAFVKFSTRSAAIAAIEALHEKCTMD 139          
BLAST of mRNA_H-canaliculatus_M_contigs7925.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBS7_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 5.560e-18
Identity = 42/70 (60.00%), Postives = 53/70 (75.71%), Query Frame = 1
Query:    1 RENKLFVGMLPHDADDMTLTGVFSGFGEITEIYCMRNPDGTPKGCAFVKFSTRAAAVAAIEALHEKCTLE 210
            R+NKLFVGM+P  A++  L  VFS FGE+ E++ +RN DG+ KGCAFVKF  R  AV AI+ALHE+ TLE
Sbjct:  113 RDNKLFVGMVPKAANEQELRKVFSSFGELREVHIIRNSDGSNKGCAFVKFMERECAVQAIDALHERYTLE 182          
BLAST of mRNA_H-canaliculatus_M_contigs7925.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UU89_HETAK)

HSP 1 Score: 83.2 bits (204), Expect = 1.150e-17
Identity = 41/70 (58.57%), Postives = 52/70 (74.29%), Query Frame = 1
Query:    1 RENKLFVGMLPHDADDMTLTGVFSGFGEITEIYCMRNPDGTPKGCAFVKFSTRAAAVAAIEALHEKCTLE 210
            RENKLFVGM+P  A +  L  VF+ FG + E++ +R PDG  KGCAFVKF+ R AA+AAI ALHE+ T+E
Sbjct:  125 RENKLFVGMVPRAAAEGDLRAVFAPFGALREVHVIRQPDGANKGCAFVKFAERRAALAAIAALHERHTME 194          
BLAST of mRNA_H-canaliculatus_M_contigs7925.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EUA5_TRICV)

HSP 1 Score: 77.0 bits (188), Expect = 1.150e-16
Identity = 37/69 (53.62%), Postives = 46/69 (66.67%), Query Frame = 1
Query:    4 ENKLFVGMLPHDADDMTLTGVFSGFGEITEIYCMRNPDGTPKGCAFVKFSTRAAAVAAIEALHEKCTLE 210
            ENKLFVGM+P   DD  +  +F   GE+  +Y +RNPDGT KGC FVK ++R AA  AI  L+E  TLE
Sbjct:   32 ENKLFVGMIPRTMDDKDVRSMFEPHGEVRSVYMIRNPDGTRKGCCFVKMTSREAADVAIGTLNESVTLE 100          
BLAST of mRNA_H-canaliculatus_M_contigs7925.1.1 vs.
Match: Trinucleotide (repeat containing 4, isoform CRA_d n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV60_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 4.430e-16
Identity = 38/70 (54.29%), Postives = 54/70 (77.14%), Query Frame = 1
Query:    1 RENKLFVGMLPHDADDMTLTGVFSGFGEITEIYCMRNPDGTPKGCAFVKFSTRAAAVAAIEALHEKCTLE 210
            +ENKLFVGM P  A++  +  VF+ +G + EI+ +RN DGT KGCAFVK++TR +A+ AIEALHE+ T++
Sbjct:  129 QENKLFVGMAPKSANEDEIRAVFAPYGTLREIHVIRNQDGTNKGCAFVKYTTRQSALDAIEALHEQYTMQ 198          
BLAST of mRNA_H-canaliculatus_M_contigs7925.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3N7_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 8.600e-16
Identity = 37/70 (52.86%), Postives = 52/70 (74.29%), Query Frame = 1
Query:    1 RENKLFVGMLPHDADDMTLTGVFSGFGEITEIYCMRNPDGTPKGCAFVKFSTRAAAVAAIEALHEKCTLE 210
            RENKLFVGM+P  A D  ++ VF  FG+I EIY +R+ DG+ +GCAF+KF  R++A+ AI  L++K T+E
Sbjct:  277 RENKLFVGMMPRTATDADVSNVFGRFGDIREIYIIRDQDGSSRGCAFLKFKARSSALTAIRELNDKYTME 346          
BLAST of mRNA_H-canaliculatus_M_contigs7925.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BYN5_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.660e-14
Identity = 36/73 (49.32%), Postives = 53/73 (72.60%), Query Frame = 1
Query:    1 RENKLFVGMLPHDADDMTLTGVFSGFGEITEIYCMRNPDGTPKGCAFVKFSTRAAAVAAIEALHEKCTLEVSS 219
            +ENKLF+GM   +AD+  +  VF+ FGEI EIY +RN DG+ KGCAF+K+S R +A++AI  L+ K  ++ +S
Sbjct:  217 QENKLFIGMTSRNADENAIREVFASFGEIREIYIIRNADGSNKGCAFLKYSQRDSALSAITMLNNKVVMDGAS 289          
BLAST of mRNA_H-canaliculatus_M_contigs7925.1.1 vs.
Match: RRM (domain-containing protein n=1 Tax=Nothoprocta perdicaria TaxID=30464 RepID=A0A8C7EB09_NOTPE)

HSP 1 Score: 69.3 bits (168), Expect = 2.180e-13
Identity = 38/72 (52.78%), Postives = 44/72 (61.11%), Query Frame = 1
Query:    1 RENKLFVGMLPHDADDMTLTGVFSGFGEITEIYCMRNPDGTPKGCAFVKFSTRAAAVAAIEALHEKCTLEVS 216
            ++ KLFVGML     D  +  +F  FG I E   +R PDGT KGCAFVKF + A A AAI ALH   TL VS
Sbjct:   18 KDRKLFVGMLSKQQADEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQSHAEAQAAIAALHGSRTLPVS 89          
BLAST of mRNA_H-canaliculatus_M_contigs7925.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TPQ6_HEMAN)

HSP 1 Score: 68.9 bits (167), Expect = 2.430e-13
Identity = 36/69 (52.17%), Postives = 46/69 (66.67%), Query Frame = 1
Query:    4 ENKLFVGMLPHDADDMTLTGVFSGFGEITEIYCMRNP-DGTPKGCAFVKFSTRAAAVAAIEALHEKCTL 207
            E KLFVGM+   ADD ++   F  FG I E+Y M++     PKGCAFVKF+ RA A +AI+ALH K T+
Sbjct:   18 EAKLFVGMISKTADDASIRATFGPFGAIDEVYIMKDKATSQPKGCAFVKFTNRADAQSAIDALHGKVTM 86          
BLAST of mRNA_H-canaliculatus_M_contigs7925.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VZL1_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 2.890e-13
Identity = 31/69 (44.93%), Postives = 48/69 (69.57%), Query Frame = 1
Query:    4 ENKLFVGMLPHDADDMTLTGVFSGFGEITEIYCMRNPDGTPKGCAFVKFSTRAAAVAAIEALHEKCTLE 210
            E+KLFVGM+  +  +  +  +F  +G++  IY +RNPDGT +GCAFV+ + R    A+IEAL+E+ T+E
Sbjct:   23 EHKLFVGMISREMTERDVRALFLPYGDVRSIYLIRNPDGTRRGCAFVRMTDREGCEASIEALNERITME 91          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7925.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized9.900e-3691.43protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized5.560e-1860.00protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Hypothetical1.150e-1758.57protein (Fragment) n=1 Tax=Heterosigma akashiwo Ta... [more]
Hypothetical1.150e-1653.62protein (Fragment) n=1 Tax=Trieres chinensis TaxID... [more]
Trinucleotide4.430e-1654.29repeat containing 4, isoform CRA_d n=2 Tax=Ectocar... [more]
Hypothetical8.600e-1652.86protein (Fragment) n=1 Tax=Pinguiococcus pyrenoido... [more]
Hypothetical2.660e-1449.32protein n=1 Tax=Corethron hystrix TaxID=216773 Rep... [more]
RRM2.180e-1352.78domain-containing protein n=1 Tax=Nothoprocta perd... [more]
Hypothetical2.430e-1352.17protein (Fragment) n=1 Tax=Hemiselmis andersenii T... [more]
Hypothetical2.890e-1344.93protein (Fragment) n=1 Tax=Pseudictyota dubia TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7925contigH-canaliculatus_M_contigs7925:2410..3220 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LNL8
PFAMsRRM_1
Model size234
Max annot lvl2759|Eukaryota
KEGG koko:K13207
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.58e-31
EggNOG OGsKOG0144@1|root,KOG0146@2759|Eukaryota
Descriptionpositive regulation of mRNA splicing, via spliceosome
Cds size210
COG categoryE
BRITEko00000,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854125.8359435-CDS-H-canaliculatus_M_contigs7925:2409..25501696854125.8359435-CDS-H-canaliculatus_M_contigs7925:2409..2550Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7925 2410..2550 -
1696854125.8480248-CDS-H-canaliculatus_M_contigs7925:3127..31961696854125.8480248-CDS-H-canaliculatus_M_contigs7925:3127..3196Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7925 3128..3196 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854125.8600924-UTR-H-canaliculatus_M_contigs7925:3196..32201696854125.8600924-UTR-H-canaliculatus_M_contigs7925:3196..3220Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs7925 3197..3220 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7925.1.1prot_H-canaliculatus_M_contigs7925.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7925 2410..3196 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7925.1.1

>prot_H-canaliculatus_M_contigs7925.1.1 ID=prot_H-canaliculatus_M_contigs7925.1.1|Name=mRNA_H-canaliculatus_M_contigs7925.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=70bp
MLPHDADDMTLTGVFSGFGEITEIYCMRNPDGTPKGCAFVKFSTRAAAVA
AIEALHEKCTLEVSSFLMGT
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mRNA from alignment at H-canaliculatus_M_contigs7925:2410..3220-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7925.1.1 ID=mRNA_H-canaliculatus_M_contigs7925.1.1|Name=mRNA_H-canaliculatus_M_contigs7925.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=811bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7925:2410..3220- (Hapterophycus canaliculatus Oshoro7m male)
CGCGAGAACAAGCTGTTTGTTGGCATGCTGCCGCACGATGCGGACGACAT GACTCTGACGGGGGTCTTCTCCGGCTTCGGAGAGATCACCGAGGTGCGGA CTGCTGTGCCTTGATGTCCGCGTCCAGCGCTGCCGCACAGGGCAGAGCAG GGCAGTGACCTACTCTAGCGCGCATCTACGTACCAAATGCATGATGCGAG CATGCCACGCCTCCTTGGGCGTGCGTGTCCGGTGTCCTGTCTTGTTAAGC CCTGGCTATCTTCTCTCGCCTCTTGTGCCCTTCGTTGTCCTGTCTGATCG GTGTCCCCGCTCCCGTTGTGTCGTATCGTCACCATTTATTTTCTTGTTCG TACCCCCTTTTTTCTGTGCAAGCCTCTTCTCTTCGTCCTTGCTCTTGACG TCTTTGACGTCTGATTTCTTCCGGCTTGTGTTCCTGAACCTGTACCTGTA CCTGTACCTCCTCTCGATCATCATCCTCGCCTTTGCTGTGCCTGTCTGTC GTCTGCCTGCGTGCCGGCCTGCCTGGCTGCCTGCCTGTCTTTTTTGCCTG CCTGCTGCCACCGCCGCTACTCTTTCTCTCTTCTCCCTCCGTCTTGTCCA TCGGTACCACCGGTGGCGTTTCCACTCGACGTGGAACTTGATGTGTCCCC GTGATCCTCTGACTCTGAAGATCTATTGTATGCGGAACCCGGATGGTACG CCGAAGGGATGCGCGTTCGTGAAGTTTTCCACAAGGGCTGCTGCCGTTGC CGCCATAGAAGCTCTGCATGAGAAATGCACCTTGGAGGTGAGCTCGTTCT TGATGGGTACT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7925:2410..3220-

>mRNA_H-canaliculatus_M_contigs7925.1.1 ID=mRNA_H-canaliculatus_M_contigs7925.1.1|Name=mRNA_H-canaliculatus_M_contigs7925.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=210bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7925:2410..3220- (Hapterophycus canaliculatus Oshoro7m male)
ATGCTGCCGCACGATGCGGACGACATGACTCTGACGGGGGTCTTCTCCGG
CTTCGGAGAGATCACCGAGATCTATTGTATGCGGAACCCGGATGGTACGC
CGAAGGGATGCGCGTTCGTGAAGTTTTCCACAAGGGCTGCTGCCGTTGCC
GCCATAGAAGCTCTGCATGAGAAATGCACCTTGGAGGTGAGCTCGTTCTT
GATGGGTACT
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