mRNA_H-canaliculatus_M_contigs7917.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7917.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7917.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7917.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKI6_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 4.780e-33
Identity = 64/89 (71.91%), Postives = 73/89 (82.02%), Query Frame = 1 
Query:   91 MASMMNSPLLLLLVAMVLQM--ASAEDFEMLGSAGTIRSQDRDPFKEGYFNMITSCFALMIFFIACMFSVRICMGKRRGNDSQSFFLVA 351
            M SM+N   LL+L+A VL M  A+AEDFE+    G+IR+QDRDPFKEGYFNMI SCFALM FFI CMFSVRIC+GK+RGNDS SFFLVA
Sbjct:    2 MPSMIN---LLVLLAAVLHMMGAAAEDFEVSTGVGSIRAQDRDPFKEGYFNMIISCFALMFFFIGCMFSVRICLGKKRGNDSHSFFLVA 87
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7917.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized4.780e-3371.91protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7917contigH-canaliculatus_M_contigs7917:90..1271 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Model size354
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_001930.1
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854125.2760305-CDS-H-canaliculatus_M_contigs7917:89..3531696854125.2760305-CDS-H-canaliculatus_M_contigs7917:89..353Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7917 90..353 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854125.288918-UTR-H-canaliculatus_M_contigs7917:353..3741696854125.288918-UTR-H-canaliculatus_M_contigs7917:353..374Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs7917 354..374 -
1696854125.3003182-UTR-H-canaliculatus_M_contigs7917:1202..12711696854125.3003182-UTR-H-canaliculatus_M_contigs7917:1202..1271Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs7917 1203..1271 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7917.1.1prot_H-canaliculatus_M_contigs7917.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7917 90..353 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7917.1.1

>prot_H-canaliculatus_M_contigs7917.1.1 ID=prot_H-canaliculatus_M_contigs7917.1.1|Name=mRNA_H-canaliculatus_M_contigs7917.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=88bp
MASMMNSPLLLLLVAMVLQMASAEDFEMLGSAGTIRSQDRDPFKEGYFNM
ITSCFALMIFFIACMFSVRICMGKRRGNDSQSFFLVA*
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mRNA from alignment at H-canaliculatus_M_contigs7917:90..1271-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7917.1.1 ID=mRNA_H-canaliculatus_M_contigs7917.1.1|Name=mRNA_H-canaliculatus_M_contigs7917.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1182bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7917:90..1271- (Hapterophycus canaliculatus Oshoro7m male)
TAGCACATCGAGAGGAATCACCACGCGGAAGTCTTCGGAGTCTCAAGAAG
AACCAGGTTACGCAAAGAGGCAAGTTCCGTTGCTGAAAGTGGGGTGGAGC
AAGAGAGACGCGCGTCTGCTGCGCCGGCAGCCTTGTTGTTGGGGTCGGAA
ATACGAGGGCAAGGAGCAGCTCTGAAAAGTACGGAAGAGTCGACATCACG
ATGTGCTCTTTAGGCACAGCCAAGTTCAGGCAGTCGTCGGCGTACACGAA
TCGATGATGGCGAGAAGCGATTAACCCTGCCGTCCGGGCCTCGACTACGA
GGCTCTCACGCTCGGTGCACCGAATGAAGCCATGGTTCGGTTGTAGCCAG
CAACTCGTGCTTGACCTGCAGTCCAAAAGTTGTCATGAGACCTGTGCGTG
CCTCATCTAAAATCGACGGGTCCCAGAAACACAAAAGTGCGCAACGCACG
ACTTTGCAAGCGCAGCAGTCATGAGGAGGCGGTTGACCTCTGGCATCCCG
CTAAGCAACGTGGGTCGTGCGCGACACTAGTGTGGAAAGTGGATCGTTGC
TGATGGACTACGCTGTCGTAGGGCCACCTATTCCCCCACGTGCACAGCCC
AGCCATCTTGGGGTCCTTCGTTCGCGGTATCAAAAGTTGAAGAGCGAGAG
AACCATTTCAACAACAAGAGGAGATTTGGAGACGAGCACAAAAAAGTTGA
AAGGGTCCCGTTGAAAGAACCAGCGAAGCAACCCGCTCCGCTCACGTTGC
CGCTGCGCGATACCGCTGTATGGCCCTCTCTGAGCAACGTTGGTCTCTTC
CACATCGTAAGCTTCGCTGCTCCCTTTCTTGCGCGCCCTAACCACCGCCG
TGCCGTCACCCCGGACCGTGTCGTTTACCCTTCGATCACCCCTGCAGATT
TTTAGACCTCCATCCACGATGGCCTCCATGATGAACTCGCCGCTGCTCCT
TCTTTTGGTAGCCATGGTCCTCCAAATGGCGTCGGCAGAAGATTTCGAGA
TGTTGGGAAGTGCTGGGACAATCAGGTCCCAGGACCGCGACCCTTTCAAG
GAGGGCTACTTCAACATGATCACCTCCTGCTTCGCTCTCATGATCTTCTT
CATCGCCTGCATGTTCAGCGTCCGTATCTGCATGGGCAAGCGCCGCGGGA
ACGACTCGCAGTCGTTCTTCCTCGTTGCTTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7917:90..1271-

>mRNA_H-canaliculatus_M_contigs7917.1.1 ID=mRNA_H-canaliculatus_M_contigs7917.1.1|Name=mRNA_H-canaliculatus_M_contigs7917.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=264bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7917:90..1271- (Hapterophycus canaliculatus Oshoro7m male)
ATGGCCTCCATGATGAACTCGCCGCTGCTCCTTCTTTTGGTAGCCATGGT
CCTCCAAATGGCGTCGGCAGAAGATTTCGAGATGTTGGGAAGTGCTGGGA
CAATCAGGTCCCAGGACCGCGACCCTTTCAAGGAGGGCTACTTCAACATG
ATCACCTCCTGCTTCGCTCTCATGATCTTCTTCATCGCCTGCATGTTCAG
CGTCCGTATCTGCATGGGCAAGCGCCGCGGGAACGACTCGCAGTCGTTCT
TCCTCGTTGCTTAG
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