mRNA_H-canaliculatus_M_contigs7914.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7914.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7914.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7914.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYP1_9PHAE)

HSP 1 Score: 207 bits (528), Expect = 2.890e-54
Identity = 248/726 (34.16%), Postives = 315/726 (43.39%), Query Frame = 1
Query:   10 TKGGSLCIAVQFTGPPPVEGPAGLMGNLLQGTFVAANPVQLGRARKRKVWPGASYTASTAVSAFASAPSSSGNLGANYCNALKATEYDTASMDSGSTSNASSSARYGYEGTGFS---------------TSSIAPGQPFFSGASSTXXXXXXXXXXXXXXXXXNLLDDSREDCKGSASYPNKRSYPSSPLHQRQNAGCRRGNIGDDIFAAFG---GMRLNLSKCAAAAADTTADGAAPIAA--ADXXXXXXDPPAALQLGRSCSMMTNAGDDLPKWDDVVR-----------------------------------RAATTTDVSVASTDMP--PSGRSFNEGRSKVMSQEEFVSLFAGAVPTTSGVDSVAAXXXXXXXXXXXXXXXXXXXXGVIVSEDGLWEGAPTEAENL-FCAPAFGRHTSFSWGL----HPAHAATAALVATDDDISDHKVTS-GDSRCVSNRRHQHQSXXXXXXXXXXXXXXXXWYIEGQRRTNAAIAAAAIGGINLPPVGNEISFRWHEE------------------------------ECDFDGHCTAPSSTAADMVPTPPLLPPPSLSSSFFP--AAFRHRQTPRP--------CHYSFSGLRSVIEQGYDLVDLTVFAHFFVDPEAKVEREAGPLEVDAATG--------------NDRATAAVAYPSIREIWPEVYKTAHIRAVEVDMVVEIRSSSGEVIYTGPT 1836
            T GG  CI +QFTGP P+EGPAGL+ +LL+ TFV+A+PVQL R RKRK  PG                + +   G +   ALK T  DTAS  +G                                  +  ++    + S  +  XXXXXXXXXXXXXXXXX       +            S P SP  ++Q+A      I DDI  AFG   G +  L              +AP+ A  AD       PP  L  GRSCS+MT  G+DLP+WDDV+R                                    +  T D + AS   P    G S++E R+ VMSQEE VSLFA A   T+       XXXX                    +  G WEGAP +  +  FC  A  RH S +W L    +   AA A  VA ++  +DH+  S     C++               XXXXXX   WY EG   +    A  A GG+ +PP G+ I+F W E+                              ECDFDG+C A  S        PP   PP+ ++SFFP  +A     T RP        C  +F GL S      +L D+TV A F VDP ++VER A  L +D A G                RA AAV +PSI EIWPEVYK  +IR +EVDMVVE+RSS G ++YTGPT
Sbjct:   80 THGGRACIEIQFTGPQPIEGPAGLLCSLLEATFVSAHPVQLDRGRKRKTRPGXXXXXXXXXXXXXXXLAETSEEGCSRSVALKTTAADTASATAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXKHEDLSDYVSDTTSYASSRTXXXXXXXXXXXXXXXXXXXXXXXXXXDATWADVGELPSTSSPFSPNQEQQHADDMV-VIDDDICTAFGVAFGGQGGLIXXXXXXXXXXXSLSAPVPATTADFPASSTSPPPCL--GRSCSVMTAEGNDLPRWDDVIRGVESPPSSGGSIDEADASGDRLPAAAAPPPLGARPASGDTDDPAPASASCPGLARGTSYDECRAGVMSQEEAVSLFAAAGAATAEXXXXXXXXXXS-------------------AGHGQWEGAPDDNPDAPFCPVALERHCSSTWALLDPTNAGAAAAAVTVAGEEGATDHQRASIVPDPCLA------------AESXXXXXXAIMWYGEGPHHS----AVPAGGGLEMPPPGDSIAFGWCEQTEAAVNEGTKFLSYHRVTHAHAPPCSLTIQECDFDGNCAATPSK-------PPRGLPPTAATSFFPDPSAAVAACTSRPSSNYLNNRCRLAFLGLES------ELRDVTVCARFSVDPASRVERFAS-LPLDGAAGXXXXXDPAGVVGGRRGRADAAVEFPSIMEIWPEVYKVDNIRVMEVDMVVEVRSSEGNILYTGPT 753          
BLAST of mRNA_H-canaliculatus_M_contigs7914.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK7_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 2.120e-44
Identity = 208/693 (30.01%), Postives = 259/693 (37.37%), Query Frame = 1
Query:   10 TKGGSLCIAVQFTGPPPVEGPAGLMGNLLQGTFVAANPVQLGRARKRKVWPGASYTASTAVSAFASAPSSSGNLGANYCNALKATEYDTASMDSGSTSNASSSARYGYEGTGFSTSSIAPGQPFFSGASSTXXXXXXXXXXXXXXXXXNLLDDSREDCKGSASYPNKRSYPSSPLHQRQNAGCRRGNIGDDIFAAFGGMRLNLSK-CAAAAADTTADGAAPIAAADXXXXXXDPPAALQLGRSCSMMTNAGDDLPKWDDV--------------------VRRAATTTDVSVASTDMPPS---GRSFNEGRSKVMSQEEFVSLFAGAVPTTSGVDSVAAXXXXXXXXXXXXXXXXXXXXGVIVSEDGLWEGAP-TEAENLFCAPAFGRHTSFSWGL-HPAHA---ATAALVATDDDISDHKVTS-GDSRCV---SNRRHQHQSXXXXXXXXXXXXXXXXWYIEGQRRTNAAIAAAAIGGINLPPVGNEISFRWHEEECDFDGHCTAPSSTAADMVPTPPLLPPPSLSSSFFP--------------------AAFRHRQTPRPCHYSFSGLRSVIEQGYDLVDLTVFAHFFVDPEAKVEREAGPLEVDAATG----------------NDRATAAVAYPSIREIWPEVYKTAHIRAVEVDMVVEIRSSSGEVIYTGPTQTVSFA-SVLRKSSP 1878
            T+GG  CI +QFTGP P+EGPAGLM NLLQ TFV+A+PVQL R RKRK  PG                                                                                       XXXXXXXXX                                                     +LS    A  AD  A  A+P            PP    LGRSCS+MT  G+DLP  D+                      R A+  TD    S+   P    G S++E R+  MSQEE VSLFA     T+     A+                        + D  WE AP  + +  FC  A  RH S +W L  P HA   A A  VA ++   DH+  S     C+   S+   Q Q                 WY EG        A  A GG+ LPP G+ I+F W E+ECDFDG+  A  S  A ++P       P+ ++SFFP                               C ++F GL S I       D TV A F VDP ++VER A  L +D A G                  R  AAV +PSI EIWPEVYK  +IR +EVDMVVE+RSS G ++YTGPT  +++  S  R S+P
Sbjct:   92 TQGGRACIEIQFTGPQPIEGPAGLMCNLLQATFVSAHPVQLDRGRKRKTRPG---------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLSAPVPATTADFPASSASP------------PPC---LGRSCSVMTAEGNDLPSIDEADASGDRLPAAXXXXXXXXFGARPASGDTDDPAPSSASCPGLARGTSYDECRAGFMSQEEAVSLFAATGAATAEAKPPAST-------------------AAAAAGDDQWERAPGDDPDGPFCPLALERHCSSTWALLDPTHAGAPAAAVTVAGEEGAPDHRRASIVPDPCLAAESSLEEQQQPTM--------------WYGEGPHHP----AVPAGGGLELPPAGDTIAFGWCEQECDFDGNYAARPSKTARVLP-------PTAATSFFPDPSAVAVAXXXXXXXXXXXXXXXXSNSLNNRCRFAFLGLESEIR------DFTVCARFSVDPASRVERFAS-LPLDGAAGXXXXXXXDPAGAVGGRRGRVDAAVEFPSIMEIWPEVYKVDNIRVMEVDMVVEVRSSDGNILYTGPTLKITYRRSAARTSAP 631          
BLAST of mRNA_H-canaliculatus_M_contigs7914.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ48_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 3.100e-19
Identity = 63/151 (41.72%), Postives = 81/151 (53.64%), Query Frame = 1
Query: 1399 ECDFDGHCTAPSSTAADMVPTPPLLPPPSLSSSFFPAAFRHRQTPRPCHYSFSGLRSVIEQGYDLVDLTVFAHFFVDPEAKVEREAGPLEVDAATGNDRATAAVAYPSIREIWPEVYKTAHIRAVEVDMVVEIRSSSGEVIYTGPTQTVSF 1851
            ECDF+G  T P+   +   P P                     T R CH  F+GL +    G DL  L V AHF VD   KV +   P+++ +   N RA A V YPS++EIWPE+Y T++IR VEVD+VVEIRS SGE  Y GP   V++
Sbjct:  383 ECDFEGRPTPPTDPKSGEPPIP-------------------SSTDRQCHLVFTGLNNT---GQDLRSLRVTAHFGVDSVHKVGKVTSPIQLGS---NGRAYAGVFYPSMQEIWPELYSTSNIRVVEVDLVVEIRSDSGEYQYVGPQLKVTY 508          
BLAST of mRNA_H-canaliculatus_M_contigs7914.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0L1_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 7.480e-12
Identity = 51/169 (30.18%), Postives = 78/169 (46.15%), Query Frame = 1
Query: 1375 ISFRWHEEECDFDGHCTAPSSTAADMVPTPPLLPPPSLSSSFFPAAFRHRQTPRPCHYSFSGLRSVIEQGYDLVDLTVFAHFFVDPEAKVEREAGP-LEVDAATGNDRATAAVAYPSIREIWPEVYKTAHIRAVEVDMVVEIRSSSGEVIYTGPTQTVSFASVLRKSSP 1878
            ++F    +ECDFDG   A              +P  S +S+          T +PC   F G+  V    Y + DL V A F V P   +   A   LE D       ++  + YPS+ +IWPEVY    ++ VEVDM V++RSS G+ +++ P+  V +      ++P
Sbjct:  428 VAFGLLRQECDFDGRSAA-------------AVPAASATSASANGVCASSSTKKPCRLRFKGIEGV---DYGIRDLAVTAQFSVGPPGNLVGTAPTNLEADRNACAGSSSCTITYPSMEDIWPEVYSARSVKVVEVDMTVDVRSSDGKWVHSWPSVKVMYRRARTATTP 580          
BLAST of mRNA_H-canaliculatus_M_contigs7914.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL1_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 9.500e-12
Identity = 54/143 (37.76%), Postives = 69/143 (48.25%), Query Frame = 1
Query: 1396 EECDFDGHCTAPSSTAADMVPTPPLLPPPSLSSSFFPAAFRHRQTPRPCHYSFSGLRSVIEQGYDLVDLTVFAHFFVDPEAKVEREAGPLEVDAATGNDRATAAVAYPSIREIWPEVYKTAHIRAVEVDMVVEIRSSSGEVIY 1824
            E+ DF+G    P+                  S S F AAF   ++    H  F GL    E G  L  L   A F  +P  K ER  GPL+   A  N R   AV YPS+ E+WPEVY +  IR V+VDM+VE+RS  G+ +Y
Sbjct:  207 EDFDFEGRTIEPNKP----------------SDSPFAAAFSVPRSDDEQHLVFIGLG---ETGRPLPTLAARAQFSANPGRKAERMVGPLQ---AGSNGRVYGAVQYPSMAELWPEVYNSTAIRVVKVDMLVEVRSRYGDSLY 327          
BLAST of mRNA_H-canaliculatus_M_contigs7914.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ42_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.250e-10
Identity = 53/155 (34.19%), Postives = 73/155 (47.10%), Query Frame = 1
Query: 1360 PVGNEISFRWHEEECDFDGHCTAPSSTAADMVPTPPLLPPPSLSSSFFPAAFRHRQTPRPCHYSFSGLRSVIEQGYDLVDLTVFAHFFVDPEAKVEREAGPLEVDAATGNDRATAAVAYPSIREIWPEVYKTAHIRAVEVDMVVEIRSSSGEVIY 1824
            P  + +      E+ DF+G    P+                  S S F AA    ++    +  F GL    E G  L  L   A F  +P  + ER  GPL+  A + N R   AV YPS+ E+WPEVY +  IR V+VDM+VE+RS SG+ +Y
Sbjct:  277 PTVDNVFIESLREDFDFEGRTIEPNKP----------------SGSPFAAALSVPRSDDEQYLVFIGLG---ETGRPLPALAARAQFSANPGRQAERMVGPLQARAGS-NGRVYGAVQYPSMAELWPEVYNSKAIRVVKVDMLVEVRSRSGDSLY 411          
BLAST of mRNA_H-canaliculatus_M_contigs7914.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7N4_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 1.630e-8
Identity = 43/101 (42.57%), Postives = 57/101 (56.44%), Query Frame = 1
Query: 1534 RPCHYSFSGLRSVIEQGYDLVDLTVFAHFFVDPEAKVEREAGPLEVDAATGNDRATAAVAYPSIREIWPEVYKTAHIRAVEVDMVVEIRSSSG-EVIYTGP 1833
            R  H  F+GL    + G+D   L V   F VD   ++     P++V AA G  RA + V YPS+ E+WPE+Y T  +RAVEVD+ VE+ S  G E  Y GP
Sbjct:   81 RDTHVVFTGLN---DTGHDPRGLRVTVIFGVDAVHQIACVTSPIQV-AADG--RAYSRVFYPSLEEVWPELYYTVDVRAVEVDVAVEVLSDDGREFRYVGP 175          
BLAST of mRNA_H-canaliculatus_M_contigs7914.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDQ6_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 4.380e-7
Identity = 43/101 (42.57%), Postives = 57/101 (56.44%), Query Frame = 1
Query: 1534 RPCHYSFSGLRSVIEQGYDLVDLTVFAHFFVDPEAKVEREAGPLEVDAATGNDRATAAVAYPSIREIWPEVYKTAHIRAVEVDMVVEIRSSSG-EVIYTGP 1833
            R  H  F+GL +    G+D   L V   F VD   ++     P++V AA G  RA + V YPS+ ++WPE+Y T  +RAVEVD+ VEI S  G E  Y GP
Sbjct:  259 RDTHVVFTGLHNT---GHDPRGLRVTVIFGVDAVHQIACVTSPVQV-AADG--RAYSRVFYPSLEDVWPELYYTVDVRAVEVDVAVEILSDDGREFRYVGP 353          
BLAST of mRNA_H-canaliculatus_M_contigs7914.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J1_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 6.540e-7
Identity = 40/143 (27.97%), Postives = 68/143 (47.55%), Query Frame = 1
Query: 1402 CDFDGHCTAPSSTAADMVPTPPLLPPPSLSSSFFPAAFRHRQTPRPCHYSFSGLRSVIEQGYDLVDLTVFAHFFVDPEAKVEREAGPLEVDAATGNDRATAAVAYPSIREIWPEVYKTAHIRAVEVDMVVEIRSSSGEVIYTG 1830
            CDF G   A    +  +VP+       +L++ F   +          H  F+GL   +  G  L  LT   +F ++    + R AGP++V     ++R   AV YP++ E+WPE+Y+   +  V+VD+ + +RS    + Y G
Sbjct:    6 CDFHGRAVAHPQES--VVPS-------ALAACFMSGSLEQ-------HLVFTGL---VGAGPHLDYLTTTVYFSINSGRPLARAAGPMQVGE---DERVYVAVKYPTMNELWPEIYQNVAVEVVQVDVFITVRSGHKTIRYPG 126          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7914.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
Uncharacterized2.890e-5434.16protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.120e-4430.01protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.100e-1941.72protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ48... [more]
Uncharacterized7.480e-1230.18protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized9.500e-1237.76protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.250e-1034.19protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.630e-842.57protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized4.380e-742.57protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized6.540e-727.97protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7914contigH-canaliculatus_M_contigs7914:2049..5140 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1890
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-03_002530.1
Cds size1890
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854125.1953835-CDS-H-canaliculatus_M_contigs7914:2048..21621696854125.1953835-CDS-H-canaliculatus_M_contigs7914:2048..2162Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7914 2049..2162 -
1696854125.214883-CDS-H-canaliculatus_M_contigs7914:2509..28871696854125.214883-CDS-H-canaliculatus_M_contigs7914:2509..2887Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7914 2510..2887 -
1696854125.225122-CDS-H-canaliculatus_M_contigs7914:3154..42221696854125.225122-CDS-H-canaliculatus_M_contigs7914:3154..4222Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7914 3155..4222 -
1696854125.2346394-CDS-H-canaliculatus_M_contigs7914:4312..43941696854125.2346394-CDS-H-canaliculatus_M_contigs7914:4312..4394Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7914 4313..4394 -
1696854125.2447507-CDS-H-canaliculatus_M_contigs7914:4892..51401696854125.2447507-CDS-H-canaliculatus_M_contigs7914:4892..5140Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7914 4893..5140 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7914.1.1prot_H-canaliculatus_M_contigs7914.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7914 2049..5140 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7914.1.1

>prot_H-canaliculatus_M_contigs7914.1.1 ID=prot_H-canaliculatus_M_contigs7914.1.1|Name=mRNA_H-canaliculatus_M_contigs7914.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=630bp
TKTTKGGSLCIAVQFTGPPPVEGPAGLMGNLLQGTFVAANPVQLGRARKR
KVWPGASYTASTAVSAFASAPSSSGNLGANYCNALKATEYDTASMDSGST
SNASSSARYGYEGTGFSTSSIAPGQPFFSGASSTTSTTSTTSTTSTTSNL
DNLLDDSREDCKGSASYPNKRSYPSSPLHQRQNAGCRRGNIGDDIFAAFG
GMRLNLSKCAAAAADTTADGAAPIAAADGDGDGDDPPAALQLGRSCSMMT
NAGDDLPKWDDVVRRAATTTDVSVASTDMPPSGRSFNEGRSKVMSQEEFV
SLFAGAVPTTSGVDSVAAAGASAAAVAAAAAAAATAAGGVIVSEDGLWEG
APTEAENLFCAPAFGRHTSFSWGLHPAHAATAALVATDDDISDHKVTSGD
SRCVSNRRHQHQSTVTTSAQRQQQQQPPGWYIEGQRRTNAAIAAAAIGGI
NLPPVGNEISFRWHEEECDFDGHCTAPSSTAADMVPTPPLLPPPSLSSSF
FPAAFRHRQTPRPCHYSFSGLRSVIEQGYDLVDLTVFAHFFVDPEAKVER
EAGPLEVDAATGNDRATAAVAYPSIREIWPEVYKTAHIRAVEVDMVVEIR
SSSGEVIYTGPTQTVSFASVLRKSSPWTAS
back to top

mRNA from alignment at H-canaliculatus_M_contigs7914:2049..5140-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7914.1.1 ID=mRNA_H-canaliculatus_M_contigs7914.1.1|Name=mRNA_H-canaliculatus_M_contigs7914.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=3092bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7914:2049..5140- (Hapterophycus canaliculatus Oshoro7m male)
ACCAAGACCACCAAGGGGGGCAGCTTGTGCATCGCAGTCCAGTTCACTGG TCCTCCGCCTGTCGAGGGACCCGCCGGCCTCATGGGCAACCTTCTACAGG GGACGTTCGTGGCGGCGAATCCTGTCCAGCTGGGCCGGGCCCGCAAGAGG AAGGTTTGGCCCGGTGCTTCTTACACAGCCTCTACGGCTGTTTCCGCCTT CGCCTCAGCGCCGAGCAGCAGCGGCAACCTGGGGGCCAATTACTGTAAGT TTCGCGAGAGGGTTTTGTGTTGTGGGTGATCCGTGACTGTTTCGCGAACG CCTGCAGACCCCGTCGGCATTTCACCGCATCCGCTCACAAGTCCGAAAAT AAGCTACGAAGACTTCGAAGGGAACGATCGTTCGTTGTTGTTCTTAAGGA AAATAACAACACCGAAGGAATAGGTCTACCCTCCTCTGAGACAAAGCATA GCGACTCAGCGGGTGCATATTTTTTTTATTGAATTGCTTGCGGTGAGGGT TCAGTAGGTTGGAAAACATTTTGTACGTGTCACATGCGACTGATGGTAGG CGATACACCCATAGGGCGCATATTGATACTTTCTGTAATGAGGCGCCGCC AAGTGAGCGTTTGTTGTTCGTTTTTTGTTCATATTCTGTCTTCTTCGACA CTGTCTTCCTGTTGAACGGCGCGCTCACTTTCCCCACCCCTCTCTGTCTT TATGTTGATCACGTGTAACCTCGTCCATAGGTGCGGTGAATGGTAGCGCA CTGAAGGCCACCGAGTACGACACCGCCAGCATGGACAGCGGCAGCACCAG CAACGCTAGCAGCAGCGCCAGATACGGCGTAGACCTTCGTCTCGAACACA ACCGTAGCGACGCGGCGGCAGCAGCTTCTACAGCGGCGGCAGCGAGGATG AAGAGGGCGGTGGCAGAGTACGAAGGCACCGGCTTCAGCACTAGCAGCAT CGCGCCCGGGCAGCCCTTCTTCAGCGGCGCCAGCAGCACCACCAGCACCA CCAGCACTACCAGCACTACCAGCACTACCAGCAACCTTGACAACCTTCTA GACGACTCCCGTGAAGACTGCAAGGGCAGTGCTTCGTACCCGAACAAGAG GTCGTACCCATCCTCCCCGCTACACCAACGGCAGAACGCCGGTTGCCGAC GAGGCAATATCGGCGACGACATATTTGCCGCATTCGGTGGCATGAGGCTG AACCTTAGCAAATGCGCCGCCGCCGCCGCCGACACAACTGCGGACGGTGC CGCCCCAATCGCCGCCGCCGACGGCGACGGCGACGGTGACGACCCGCCAG CAGCTTTACAGTTGGGCCGCTCCTGTAGCATGATGACCAACGCAGGAGAC GACTTGCCCAAGTGGGACGATGTCGTCCGCCGCGCGGCCACCACCACTGA CGTCTCGGTGGCCTCCACCGACATGCCCCCCAGCGGCAGAAGCTTCAACG AGGGCAGGAGCAAGGTCATGTCACAAGAAGAATTCGTCTCGCTTTTCGCG GGCGCCGTGCCAACCACATCAGGAGTTGACAGCGTGGCCGCAGCCGGTGC ATCTGCAGCTGCCGTAGCCGCCGCAGCCGCGGCAGCCGCCACCGCTGCTG GAGGAGTAATCGTCTCCGAAGACGGCCTTTGGGAAGGGGCCCCAACCGAG GCCGAAAATCTCTTTTGCGCACCCGCTTTTGGACGCCACACTTCTTTCTC TTGGGGGCTTCATCCCGCCCACGCTGCAACTGCGGCGTTGGTCGCCACCG ATGACGACATTAGCGATCATAAGGTCACAAGTGGCGATAGCCGCTGTGTC AGCAACCGTCGCCACCAGCACCAATCGACGGTGACTACTTCGGCGCAGCG CCAGCAGCAACAGCAACCGCCGGGTTGGTACATCGAAGGACAACGCCGCA CTAACGCCGCGATTGCCGCCGCCGCCATCGGTGGGATCAACTTACCGCCG GTGGGGAACGAGATCTCGTTTCGTTGGCATGAAGAGGTGAGAGAGCTCCC GTTTGGGCTAGAGGGAGTGAAACTATCTTGCGCTGCTCCCCTGTGTATGC CAACCTTTCCCTGGTCGCCAATTGGGTGAGGAAGGAAGGAAACACACATA GCCCAGAGATGCGGCACCATTTCGCCTCTTTTCACCGTTGCCCCCCCCCG CCTTCCCCGTTGAAGATGTCCGTGTTTAGACACCCACATGGCTTTCGAGA GGAGCAACCACCTAAACGAGCCCTCTTCCTGCCTGTTTCCGCTTGACTTA CAGGAGTGCGACTTCGACGGGCACTGTACTGCTCCGTCGTCCACAGCCGC CGACATGGTGCCTACTCCGCCGTTGCTTCCACCGCCATCGCTCTCGTCGT CCTTCTTTCCGGCGGCCTTCCGTCATCGTCAGACTCCTCGGCCGTGCCAC TACTCATTCAGCGGGCTCAGGAGTGTGATTGAGCAAGGGTACGATCTCGT AGACCTCACCGTGTTCGCGCATTTCTTTGTAGACCCTGAGGCCAAGGTGG AGAGGGAGGCGGGCCCTCTCGAGGTCGACGCTGCCACGGGCAACGATCGG GCGACCGCGGCGGTGGCTTACCCCAGCATCCGGGAGATCTGGCCGGAGGT GTACAAGACTGCCCACATCAGGGCCGTTGAGGTATGCTATTTACAGTGCA TATACGCCACCCAGTGTCCTTTGCTCGTTTCCTCTTCTCTCTTCATAAAC TGCACGGCGTCAGACATGAGGATGTTTTGAAAAGCGTGTGGGACAGTTGG TGTCGACAAGATTCGTCGACGACTGGCTTCTTGCATCTTCTGAAGGTTGG TGATGCTGCCACAGGCAGCATCACTACGATGCACTCATGTTGCACTGCTT CCATTTATCCATCCCGCACTTTGAGAAAACTCTTCTTTGAACGCGCCTCT TTCCCTCGTCGTGTCTCCTCTCGCGTGATCGACCACCTTACTCGGCCTTT CGATCCACAACCCGATCTACGCTTCCAGGTGGACATGGTGGTCGAAATCC GATCGAGCAGCGGAGAGGTGATCTACACCGGGCCCACCCAAACGGTGAGC TTTGCTTCCGTTTTGAGAAAGAGTTCGCCTTGGACGGCATCT
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7914:2049..5140-

>mRNA_H-canaliculatus_M_contigs7914.1.1 ID=mRNA_H-canaliculatus_M_contigs7914.1.1|Name=mRNA_H-canaliculatus_M_contigs7914.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=1890bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7914:2049..5140- (Hapterophycus canaliculatus Oshoro7m male)
ACCAAGACCACCAAGGGGGGCAGCTTGTGCATCGCAGTCCAGTTCACTGG
TCCTCCGCCTGTCGAGGGACCCGCCGGCCTCATGGGCAACCTTCTACAGG
GGACGTTCGTGGCGGCGAATCCTGTCCAGCTGGGCCGGGCCCGCAAGAGG
AAGGTTTGGCCCGGTGCTTCTTACACAGCCTCTACGGCTGTTTCCGCCTT
CGCCTCAGCGCCGAGCAGCAGCGGCAACCTGGGGGCCAATTACTGTAACG
CACTGAAGGCCACCGAGTACGACACCGCCAGCATGGACAGCGGCAGCACC
AGCAACGCTAGCAGCAGCGCCAGATACGGCTACGAAGGCACCGGCTTCAG
CACTAGCAGCATCGCGCCCGGGCAGCCCTTCTTCAGCGGCGCCAGCAGCA
CCACCAGCACCACCAGCACTACCAGCACTACCAGCACTACCAGCAACCTT
GACAACCTTCTAGACGACTCCCGTGAAGACTGCAAGGGCAGTGCTTCGTA
CCCGAACAAGAGGTCGTACCCATCCTCCCCGCTACACCAACGGCAGAACG
CCGGTTGCCGACGAGGCAATATCGGCGACGACATATTTGCCGCATTCGGT
GGCATGAGGCTGAACCTTAGCAAATGCGCCGCCGCCGCCGCCGACACAAC
TGCGGACGGTGCCGCCCCAATCGCCGCCGCCGACGGCGACGGCGACGGTG
ACGACCCGCCAGCAGCTTTACAGTTGGGCCGCTCCTGTAGCATGATGACC
AACGCAGGAGACGACTTGCCCAAGTGGGACGATGTCGTCCGCCGCGCGGC
CACCACCACTGACGTCTCGGTGGCCTCCACCGACATGCCCCCCAGCGGCA
GAAGCTTCAACGAGGGCAGGAGCAAGGTCATGTCACAAGAAGAATTCGTC
TCGCTTTTCGCGGGCGCCGTGCCAACCACATCAGGAGTTGACAGCGTGGC
CGCAGCCGGTGCATCTGCAGCTGCCGTAGCCGCCGCAGCCGCGGCAGCCG
CCACCGCTGCTGGAGGAGTAATCGTCTCCGAAGACGGCCTTTGGGAAGGG
GCCCCAACCGAGGCCGAAAATCTCTTTTGCGCACCCGCTTTTGGACGCCA
CACTTCTTTCTCTTGGGGGCTTCATCCCGCCCACGCTGCAACTGCGGCGT
TGGTCGCCACCGATGACGACATTAGCGATCATAAGGTCACAAGTGGCGAT
AGCCGCTGTGTCAGCAACCGTCGCCACCAGCACCAATCGACGGTGACTAC
TTCGGCGCAGCGCCAGCAGCAACAGCAACCGCCGGGTTGGTACATCGAAG
GACAACGCCGCACTAACGCCGCGATTGCCGCCGCCGCCATCGGTGGGATC
AACTTACCGCCGGTGGGGAACGAGATCTCGTTTCGTTGGCATGAAGAGGA
GTGCGACTTCGACGGGCACTGTACTGCTCCGTCGTCCACAGCCGCCGACA
TGGTGCCTACTCCGCCGTTGCTTCCACCGCCATCGCTCTCGTCGTCCTTC
TTTCCGGCGGCCTTCCGTCATCGTCAGACTCCTCGGCCGTGCCACTACTC
ATTCAGCGGGCTCAGGAGTGTGATTGAGCAAGGGTACGATCTCGTAGACC
TCACCGTGTTCGCGCATTTCTTTGTAGACCCTGAGGCCAAGGTGGAGAGG
GAGGCGGGCCCTCTCGAGGTCGACGCTGCCACGGGCAACGATCGGGCGAC
CGCGGCGGTGGCTTACCCCAGCATCCGGGAGATCTGGCCGGAGGTGTACA
AGACTGCCCACATCAGGGCCGTTGAGGTGGACATGGTGGTCGAAATCCGA
TCGAGCAGCGGAGAGGTGATCTACACCGGGCCCACCCAAACGGTGAGCTT
TGCTTCCGTTTTGAGAAAGAGTTCGCCTTGGACGGCATCT
back to top