mRNA_H-canaliculatus_M_contigs79.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs79.2.1
Unique NamemRNA_H-canaliculatus_M_contigs79.2.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs79.2.1 vs.
Match: HYPK_UBA (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P8_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 6.480e-31
Identity = 70/97 (72.16%), Postives = 81/97 (83.51%), Query Frame = 1 
Query:    1 MTDKEEATAGLEKVTDYHVEKELNEDDTANALSSLSTNSAKT---TSTEPSTEASLKISAADIEVLKDELEVSSEEAKTALLTGNGDLVQAFRKLLR 282
            M + EEA AGLEKVTDYH EKELNE+DTANALSSL+ NS+ T    S EPSTE++LKISAADIEVLK+ELEVS+EEAK ALL  +GD+VQA R LL+
Sbjct:    1 MAEAEEANAGLEKVTDYHAEKELNENDTANALSSLANNSSPTLIPASAEPSTESTLKISAADIEVLKEELEVSTEEAKAALLKRDGDVVQALRLLLQ 97
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs79.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
HYPK_UBA6.480e-3172.16domain-containing protein n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs79contigH-canaliculatus_M_contigs79:13198..16625 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog7719.XP_009858061.1
Preferred nameHYPK
Model size570
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.19e-05
EggNOG OGsKOG3450@1|root,KOG3450@2759|Eukaryota,3A99I@33154|Opisthokonta,3BQAP@33208|Metazoa,3D6NX@33213|Bilateria,48E2K@7711|Chordata
Ec32 ortholog descriptionUBA-like
Ec32 orthologEc-22_002540.1
Descriptionhuntingtin interacting protein K
Cds size285
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854124.1654155-CDS-H-canaliculatus_M_contigs79:13197..133281696854124.1654155-CDS-H-canaliculatus_M_contigs79:13197..13328Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs79 13198..13328 +
1696854124.1782198-CDS-H-canaliculatus_M_contigs79:16186..163401696854124.1782198-CDS-H-canaliculatus_M_contigs79:16186..16340Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs79 16187..16340 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854124.1896687-UTR-H-canaliculatus_M_contigs79:16340..166251696854124.1896687-UTR-H-canaliculatus_M_contigs79:16340..16625Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs79 16341..16625 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs79.2.1prot_H-canaliculatus_M_contigs79.2.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs79 13198..16340 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs79.2.1

>prot_H-canaliculatus_M_contigs79.2.1 ID=prot_H-canaliculatus_M_contigs79.2.1|Name=mRNA_H-canaliculatus_M_contigs79.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=95bp
MTDKEEATAGLEKVTDYHVEKELNEDDTANALSSLSTNSAKTTSTEPSTE
ASLKISAADIEVLKDELEVSSEEAKTALLTGNGDLVQAFRKLLR*
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mRNA from alignment at H-canaliculatus_M_contigs79:13198..16625+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs79.2.1 ID=mRNA_H-canaliculatus_M_contigs79.2.1|Name=mRNA_H-canaliculatus_M_contigs79.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=3428bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs79:13198..16625+ (Hapterophycus canaliculatus Oshoro7m male)
ATGACCGACAAAGAAGAGGCTACTGCTGGCTTGGAGAAGGTGACTGATTA
TCACGTGGAGAAGGAACTCAACGAGGATGATACGGCGAACGCATTGTCGA
GCTTATCCACCAACTCCGCAAAGACAACAAGGTACTTTGTTATACACATC
GTGTCGTCTGCGTACCAAGAAAAAGGATGACCCTGAGACTACTCCGTAAA
ATATACTCCCTCCGACCCGAAATATAAGGGCGGTTTGGAAATCCGGTAAT
ATAAGGGCGGTTTGTTGTTCAGGGCGATACGTGAGGTGTTTTTGCACCGT
TCTTTTTTCATAATGCTCCAATCGGTAGAACTCCATGAAAACCTGAAAAA
AAAACAGGGGATGATAATTTTTTGTCCCCTCCTTCGGGTTTTTTTTCCGG
GCGGATTTCCGGCCAGTAAGGAAATCTGGGGTGTCGTTTTTTCTTCTTCA
GGTGGCGCAGAAAGGCTTTTTTTTCGATATCTTTTGTAAGGAGTAATCTA
GGCTATGTAGAGCGCACTTTAGACCCAAAGGTCGAGAAAGAACCGAACAT
CTTCCCTCTTGACCGGAGGAAAATAAATGGGGTGCCAAAAAATGAAACCT
TCGAGGACAAAAAGGGCACGAAGAAAAAAAAGATGAAAAAAAGTGATTAG
GGTGAAAAAAAAAGGTACATATGGTGGGATTCGAACTCACGGATCGAAGA
CTCATTGTTATACCGCCCTTATATTACCGGATTTATTTCCAAACCGCCCT
TATATTTCGGGACGGAGGGAGTATGAAATTAAAGAGTTTCGGACGCGACG
CGCCAGAGTGCTCAGGTTCAGACCACGGTAGGTGGGATCCAGGTTGATCC
ACAGCGACCAGTTGTTGTCGAAATAACACTGATCCGGAGAACGTAGTTTG
AAGAAACGATACGTCCTGCGTTTGACCATCTCAGCTTGCCGCAGGGAAAG
GACAACCCTCACATGTACCGACGAGGAGCGTTGCGCACTAACATCAGGTT
TTTCCAGCAACCCTTGCTGCACTGGGATGGCACGTTCGTGTCGCTCGGAT
TTGGTGGGCTTTCTCCAAGTTTGCGAAAAGGAGATAGTGTGTGCGATTGA
AATACGTCTGTTTACAAGTGTACAGACGAAATCCCTTCCGACGAAAGTTC
CTACTGAGCGTGGGCCTTCGCTTTGCTGGCGCAGTTACTCCAAACCCACA
CGTCGGCCACCAACGACTCAACAGGAACGATTCCGGTTGACGTCTGACCT
CGATCCGTGGAGTAAGGCGGAAGAGAGAGGCATGTCGCGCTGTGTCTCTC
GACCTTCAAGTCAGCTGACATGTTGGATGTAGAGGAATAGAAAAGACCTT
GGACTCTTTCCAAATCGAATGTGTTTCCTCCTTGTTGCCCGAGCACCGCG
CACAGACACATGCCAGGCGCCTCAGCTGAAATCTGCCAATAACCCCTTCC
CTCCCAGCACTGTCGCGAAGGTCAGCACAATCTGGTGGTGTGTTTTGTTG
CCTGCAACGGACTCTCAGGTTATTATGATGATGACCCGAGAGTTCTGAGT
TGGGCACGTGAGAGCTCAGGGTCACGGATGCTTCTTGACCACTTTTCCCT
GAGCGCTTCGTCCGCGAGCGCTCTCAACTGTTCTAAAATCAAATATCGGT
GGCTCTAAAAAGGAATTGCCAGCTTTTCTAACCTTGAGCCCTTAGCACTT
TCCCCGAGCACTTCGGAAACAAAAAGCTGCGTCCGAAACTTGCTACTGTA
CCCCGTTTTCATGTGAGGCCGAAAGCAGGTATCCGTTTGTCTCTGAAATC
GATCAGCGCCACCTCATTGGCCAACGCAGGCCACCACCCGACATTGCCGG
CATTTCCGCCGGGCAGCCCCAATTGCGGCTATCCCACACACATTTACCCG
AAAATGGCCATGGATTCGCGGGCTCTTCGACCAACGGCGTACACGCGTCA
TCCAGGACTGAGACTCTCAGCCAACAGCGACGGCTGCATCCGGCTACTGT
AGTGTTGCCATGCACGCGCACCAACCTCCGCTTGAACGGACGACCTCTTT
TTGCGTTATCTCTCTTGCCTCTTCAGAAGTTTTCTCTCTCCTACGCGAGA
GCTAACACTAGACTCGAAATACCAATAGCAGCAGTCATGGATTTGTACTT
TCCCTTCCGAGGGTCTACAAGTGTAGCTCGAGGTGAATCAGCACTTCCCT
TGGCCAAGAAGTTGCCGGCGGTACCTTTGGGCAACGACTTCTCCCGCCGG
TAGGTGTTTGTTATCACTCACGGTGTATCACAGTGGCTGCGCTTCTTGTT
GCGAATGTCTTGTCGGCCCTCGCAGACGGCAGAAAGAGACATGTATGGAG
GGAAGAGGGAGAACGAAAAAAAGGCCATCCGTTCAAGCGGAGGTTGGTGC
GCGTGCATGCGAACACTAGCCGGATCCAGCCGTCGCTGTTGGTGGCTGAG
AGTCTCAGTCCTGGCTGACTTATGTACGCCATTCGTCAAAGAACCCGTAT
ATCCATGACCACGTTTGGGTAATTTCGGGTATGGGTGTGTGGAAAATGAG
CGCCCTCCGAGCGATGAACAGCCGCAATCGGGTTTACCCGGCAGAAATGC
CGGCAATGTCGGATGGCGGCCTGCGCTGCCAACGGTATGACGCGAATCGA
CTTCAAGGCCTAGAGATACCCGTTTCAGGCCAAACATGGACATGGAGTAT
ACCCATTTTTGGCAACTGGTCTTTCCAAATAGTAATTTTGCCAAAGGCTC
TTCGTAGCTTAGTGTGGAAGACTCCTGTTCGTACGATCCTTCGTCCTTAG
TGACATCGAAAGGGTTGGAGAATTCAACAAACTGCCGGAATGTTTTCGCG
AGGCTCAGGAGGTCCTGAAGCCTCTCAGGCCCTCCCGTCCCATTCTTCTG
GCGAATTAGAACTGACAGTCGCCCTCCTCCCATCGTCCTACGCTTCCACG
TTTATCTATGGATCATTTGGCGTTGCGCACATGGCAAAGCACGGAGCCAA
GCACGGAAGCAAGTCTTAAGATATCGGCGGCAGATATTGAAGTTTTGAAG
GACGAGCTGGAAGTTTCAAGTGAAGAGGCGAAAACTGCGTTGTTGACAGG
GAATGGTGATCTTGTGCAAGCTTTCAGAAAACTATTGCGATAAGAGAATC
TCCGAGTTTCGTGTACAAGCCCATGCCTGCGTGTACAGTAGTGCCGTTTG
GAGTTGCTCGACTCAAAACGTCGTAACTAGAAACGGTCTTATGGCGATTT
AGAAGGGAGAGCACGAGCTACACGGTTTTGTCTACGGCGAAACTATTCGA
TGCAGGAAAGGCCTTCGCAAATTTAAATGTGTGCACATGGCACACCTCTG
ACCAGAGTTTCGAAGAGTTATCGATAATGATGTCCGCTACGAAGCGGTCT
GCTGGAGACGCTTCCTGTTTATCAGGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs79:13198..16625+

>mRNA_H-canaliculatus_M_contigs79.2.1 ID=mRNA_H-canaliculatus_M_contigs79.2.1|Name=mRNA_H-canaliculatus_M_contigs79.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=285bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs79:13198..16625+ (Hapterophycus canaliculatus Oshoro7m male)
ATGACCGACAAAGAAGAGGCTACTGCTGGCTTGGAGAAGGTGACTGATTA
TCACGTGGAGAAGGAACTCAACGAGGATGATACGGCGAACGCATTGTCGA
GCTTATCCACCAACTCCGCAAAGACAACAAGCACGGAGCCAAGCACGGAA
GCAAGTCTTAAGATATCGGCGGCAGATATTGAAGTTTTGAAGGACGAGCT
GGAAGTTTCAAGTGAAGAGGCGAAAACTGCGTTGTTGACAGGGAATGGTG
ATCTTGTGCAAGCTTTCAGAAAACTATTGCGATAA
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