mRNA_H-canaliculatus_M_contigs78305.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs78305.1.1
Unique NamemRNA_H-canaliculatus_M_contigs78305.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs78305.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs78305contigH-canaliculatus_M_contigs78305:336..461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Model size126
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size126
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854119.307861-CDS-H-canaliculatus_M_contigs78305:335..4611696854119.307861-CDS-H-canaliculatus_M_contigs78305:335..461Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs78305 336..461 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs78305.1.1prot_H-canaliculatus_M_contigs78305.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs78305 336..461 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs78305.1.1

>prot_H-canaliculatus_M_contigs78305.1.1 ID=prot_H-canaliculatus_M_contigs78305.1.1|Name=mRNA_H-canaliculatus_M_contigs78305.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=42bp
METSGENWESFGGSHGCWRIKAFTRTLGELTILVHPTSDRSS
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mRNA from alignment at H-canaliculatus_M_contigs78305:336..461+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs78305.1.1 ID=mRNA_H-canaliculatus_M_contigs78305.1.1|Name=mRNA_H-canaliculatus_M_contigs78305.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=126bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78305:336..461+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGAAACCAGCGGCGAGAACTGGGAGAGCTTCGGCGGATCGCACGGGTG
CTGGCGAATAAAGGCGTTCACGAGGACGCTGGGGGAACTCACTATACTGG
TCCACCCAACGTCTGACCGCTCGAGC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs78305:336..461+

>mRNA_H-canaliculatus_M_contigs78305.1.1 ID=mRNA_H-canaliculatus_M_contigs78305.1.1|Name=mRNA_H-canaliculatus_M_contigs78305.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=126bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78305:336..461+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGAAACCAGCGGCGAGAACTGGGAGAGCTTCGGCGGATCGCACGGGTG
CTGGCGAATAAAGGCGTTCACGAGGACGCTGGGGGAACTCACTATACTGG
TCCACCCAACGTCTGACCGCTCGAGC
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