mRNA_H-canaliculatus_M_contigs78272.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs78272.1.1
Unique NamemRNA_H-canaliculatus_M_contigs78272.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs78272.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLK8_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 5.890e-19
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 1 
Query:    4 PAEFDHAITYVTTIKKRFSHEPQTYKAFLEILHTYQKEQRG 126
            PAEFDHAITYVTTIKKRFSHEPQTYKAFLEILHTYQKEQRG
Sbjct:  283 PAEFDHAITYVTTIKKRFSHEPQTYKAFLEILHTYQKEQRG 323
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BLAST of mRNA_H-canaliculatus_M_contigs78272.1.1 vs.
Match: HDAC_interact (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0X2_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 5.240e-18
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:    4 PAEFDHAITYVTTIKKRFSHEPQTYKAFLEILHTYQKEQRG 126
            PAEFDHAITYVTTIKKRFSHEPQTYKAFLEILHTYQKEQR 
Sbjct:  156 PAEFDHAITYVTTIKKRFSHEPQTYKAFLEILHTYQKEQRA 196
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BLAST of mRNA_H-canaliculatus_M_contigs78272.1.1 vs.
Match: HDAC_interact (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD67_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.330e-17
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 1 
Query:    1 QPAEFDHAITYVTTIKKRFSHEPQTYKAFLEILHTYQKEQRG 126
            QPAEFDHAI+YVTTIKKRFS EPQTYKAFLEILHTYQKEQRG
Sbjct:  293 QPAEFDHAISYVTTIKKRFSTEPQTYKAFLEILHTYQKEQRG 334
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BLAST of mRNA_H-canaliculatus_M_contigs78272.1.1 vs.
Match: Hypothetical (protein n=8 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E9C3_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.190e-16
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    4 PAEFDHAITYVTTIKKRFSHEPQTYKAFLEILHTYQKEQRG 126
            P EFDHAITYVTTIKKRF+HEP+TYKAFLEILHTYQKEQR 
Sbjct:  137 PVEFDHAITYVTTIKKRFAHEPETYKAFLEILHTYQKEQRS 177
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BLAST of mRNA_H-canaliculatus_M_contigs78272.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJY5_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.340e-16
Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    1 QPAEFDHAITYVTTIKKRFSHEPQTYKAFLEILHTYQKEQRG 126
            QP EFDHAI YVTTIKKRFS +P TYK FLEILHTYQ+EQRG
Sbjct:   22 QPVEFDHAINYVTTIKKRFSEDPDTYKTFLEILHTYQREQRG 63
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BLAST of mRNA_H-canaliculatus_M_contigs78272.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XK99_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.950e-16
Identity = 36/46 (78.26%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:    1 QPAEFDHAITYVTTIKKRFSHEPQTYKAFLEILHTYQKEQRGERRV 138
            QP EFDHAI YVTTIKKRFS +P TYK FLEILHTYQKEQR  + V
Sbjct:   22 QPVEFDHAINYVTTIKKRFSEDPDTYKTFLEILHTYQKEQRSIKEV 67
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BLAST of mRNA_H-canaliculatus_M_contigs78272.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K7F6_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 4.600e-16
Identity = 36/45 (80.00%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    4 PAEFDHAITYVTTIKKRFSHEPQTYKAFLEILHTYQKEQRGERRV 138
            P EFDHAI YVTTIKKRF+ EP+TYK FLEILHTYQKEQRG + V
Sbjct:   16 PVEFDHAINYVTTIKKRFAAEPETYKKFLEILHTYQKEQRGIKEV 60
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BLAST of mRNA_H-canaliculatus_M_contigs78272.1.1 vs.
Match: Hypothetical (protein (Fragment) n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9S0A7_PHATR)

HSP 1 Score: 72.8 bits (177), Expect = 6.640e-16
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    4 PAEFDHAITYVTTIKKRFSHEPQTYKAFLEILHTYQKEQRGERRV 138
            P EF+HAI YVT IKKRF++EP+TYK FLEILHTYQKEQRG + V
Sbjct:    4 PMEFNHAINYVTNIKKRFANEPETYKKFLEILHTYQKEQRGIKEV 48
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs78272.1.1 vs.
Match: HDAC_interact (domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F9A5_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.430e-15
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 QPAEFDHAITYVTTIKKRFSHEPQTYKAFLEILHTYQKEQRGERRV 138
            QP EFDHAI YVTTIKKRF+ EP+TYK FLEILHTYQKEQRG + V
Sbjct:   89 QPLEFDHAINYVTTIKKRFADEPETYKKFLEILHTYQKEQRGIKEV 134
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs78272.1.1 vs.
Match: HDAC_interact (domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YWU3_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.440e-15
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 QPAEFDHAITYVTTIKKRFSHEPQTYKAFLEILHTYQKEQRGERRV 138
            QP EFDHAI YVTTIKKRF+ EP+TYK FLEILHTYQKEQRG + V
Sbjct:  285 QPLEFDHAINYVTTIKKRFADEPETYKKFLEILHTYQKEQRGIKEV 330
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs78272.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized5.890e-19100.00protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131... [more]
HDAC_interact5.240e-1897.56domain-containing protein n=1 Tax=Ectocarpus silic... [more]
HDAC_interact1.330e-1795.24domain-containing protein n=1 Tax=Tribonema minus ... [more]
Hypothetical1.190e-1690.24protein n=8 Tax=Pelagomonas calceolata TaxID=35677... [more]
Hypothetical1.340e-1683.33protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=... [more]
Hypothetical2.950e-1678.26protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=... [more]
Hypothetical4.600e-1680.00protein (Fragment) n=1 Tax=Odontella aurita TaxID=... [more]
Hypothetical6.640e-1675.56protein (Fragment) n=3 Tax=Phaeodactylum tricornut... [more]
HDAC_interact1.430e-1580.43domain-containing protein (Fragment) n=1 Tax=Fragi... [more]
HDAC_interact1.440e-1580.43domain-containing protein n=1 Tax=Pseudo-nitzschia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs78272contigH-canaliculatus_M_contigs78272:168..305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G0X2
PFAMsPAH,Sin3_corepress,Sin3a_C
Model size138
Max annot lvl2759|Eukaryota
KEGG koko:K11644
KEGG Pathwayko04139,ko04919,ko05016,ko05202,map04139,map04919,map05016,map05202
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue8.59e-19
EggNOG OGsCOG5602@1|root,KOG4204@2759|Eukaryota
Descriptionhistone deacetylation
Cds size138
COG categoryB
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854119.1647682-CDS-H-canaliculatus_M_contigs78272:167..3051696854119.1647682-CDS-H-canaliculatus_M_contigs78272:167..305Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs78272 168..305 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs78272.1.1prot_H-canaliculatus_M_contigs78272.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs78272 168..305 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs78272.1.1

>prot_H-canaliculatus_M_contigs78272.1.1 ID=prot_H-canaliculatus_M_contigs78272.1.1|Name=mRNA_H-canaliculatus_M_contigs78272.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=46bp
QPAEFDHAITYVTTIKKRFSHEPQTYKAFLEILHTYQKEQRGERRV
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mRNA from alignment at H-canaliculatus_M_contigs78272:168..305+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs78272.1.1 ID=mRNA_H-canaliculatus_M_contigs78272.1.1|Name=mRNA_H-canaliculatus_M_contigs78272.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=138bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78272:168..305+ (Hapterophycus canaliculatus Oshoro7m male)
CAGCCGGCGGAGTTCGACCACGCCATCACGTACGTCACCACCATCAAGAA
GCGCTTCAGCCACGAGCCGCAGACCTACAAGGCCTTCCTCGAGATCCTGC
ACACCTACCAGAAGGAGCAGCGAGGTGAGCGGCGGGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs78272:168..305+

>mRNA_H-canaliculatus_M_contigs78272.1.1 ID=mRNA_H-canaliculatus_M_contigs78272.1.1|Name=mRNA_H-canaliculatus_M_contigs78272.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=138bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78272:168..305+ (Hapterophycus canaliculatus Oshoro7m male)
CAGCCGGCGGAGTTCGACCACGCCATCACGTACGTCACCACCATCAAGAA
GCGCTTCAGCCACGAGCCGCAGACCTACAAGGCCTTCCTCGAGATCCTGC
ACACCTACCAGAAGGAGCAGCGAGGTGAGCGGCGGGTG
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