mRNA_H-canaliculatus_M_contigs78243.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs78243.1.1
Unique NamemRNA_H-canaliculatus_M_contigs78243.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs78243.1.1 vs.
Match: Alginate_exp (domain-containing protein n=2 Tax=Denitrobaculum tricleocarpae TaxID=2591009 RepID=A0A545U1H8_9PROT)

HSP 1 Score: 99.8 bits (247), Expect = 9.710e-22
Identity = 53/145 (36.55%), Postives = 85/145 (58.62%), Query Frame = 1
Query:    7 VVRKTSLTLGRFNVSDKREWFYDKSLDGILLSFDLKPVDTRFSLSINREELFGSDLLRHNDVDPVNNLIAVAEHEPFKNIDLELTAYSIIRHDRSEDNDSPIFYGVTSNGKLVDERIRWWSGLAWARGEDDDENIRGFGFDVGAT 441
            V++  S T+GR    D+REW +D+ LD   L +  +  +    +S++REEL   D+L    VD +NN   V  +   +  D ELT + ++R DR+  ++  +F G++S G+L  + I +W+  A  RG +D  +IRG+GFDVGAT
Sbjct:  167 VLQGVSATVGRQEFKDEREWLFDEDLDAARLFY--RNSNFGLEVSVSREELLDKDILNEESVDHINNYFLVGRYALGE--DSELTPFFLVRDDRTSSDEDLVFLGMSSTGELTSD-IDYWAQFAHVRGSEDGADIRGYGFDVGAT 306          
BLAST of mRNA_H-canaliculatus_M_contigs78243.1.1 vs.
Match: alginate (export family protein n=1 Tax=Pelagibius litoralis TaxID=374515 RepID=UPI0014245C5B)

HSP 1 Score: 94.7 bits (234), Expect = 5.230e-20
Identity = 52/145 (35.86%), Postives = 79/145 (54.48%), Query Frame = 1
Query:    7 VVRKTSLTLGRFNVSDKREWFYDKSLDGILLSFDLKPVDTRFSLSINREELFGSDLLRHNDVDPVNNLIAVAEHEPFKNIDLELTAYSIIRHDRSEDNDSPIFYGVTSNGKLVDERIRWWSGLAWARGEDDDENIRGFGFDVGAT 441
            ++   S+TLGR    D+REW YD+ LD + L   L+  D    +S++REEL   DL      D +NN      +      D EL+ Y   R DR+  ++  IF G++S+G+L  + I +W   A  RG +D  ++ G+GFD+GAT
Sbjct:  136 ILPGVSMTLGRQEFKDEREWLYDEDLDAVRLF--LRYSDFGLEVSVSREELVDKDLFNDTSADEINNYFLFGRYA--LGDDSELSPYLFFRDDRTSSDEDLIFIGLSSSGELTSD-IDYWVQAAHVRGSEDGTDVSGYGFDIGAT 275          
BLAST of mRNA_H-canaliculatus_M_contigs78243.1.1 vs.
Match: Alginate_exp (domain-containing protein n=1 Tax=Candidatus Abyssubacteria bacterium SURF_5 TaxID=2093360 RepID=A0A3A4NBU9_9BACT)

HSP 1 Score: 91.3 bits (225), Expect = 9.840e-19
Identity = 52/145 (35.86%), Postives = 80/145 (55.17%), Query Frame = 1
Query:    7 VVRKTSLTLGRFNVSDKREWFYDKSLDGILLSFDLKPVDTRFSLSINREELFGSDLLRHNDVDPVNNLIAVAEHEPFKNIDLELTAYSIIRHDRSEDNDSPIFYGVTSNGKLVDERIRWWSGLAWARGEDDDENIRGFGFDVGAT 441
            V+    L +GR    D+REW YD+ LDG+ L +    +    S S+  +     DLL   + D + N  A   + P    D  ++A++  RHDRS++ + PIFYGV+  G+ V + + +W+ LA   G+  D++IRGFG D GAT
Sbjct:  149 VIDGLDLKVGRQRFKDEREWLYDEELDGVRLFYGFWRLGLDLSASVKNDP----DLLHGWEEDEITNYAAFFNYCPID--DNIISAFAFYRHDRSDEEERPIFYGVSLVGEAV-KHLEYWAELASVDGKSGDDDIRGFGGDAGAT 286          
BLAST of mRNA_H-canaliculatus_M_contigs78243.1.1 vs.
Match: Alginate_exp (domain-containing protein (Fragment) n=1 Tax=Candidatus Dadabacteria bacterium TaxID=2080303 RepID=A0A7C2NHN3_9BACT)

HSP 1 Score: 86.7 bits (213), Expect = 1.200e-17
Identity = 51/140 (36.43%), Postives = 78/140 (55.71%), Query Frame = 1
Query:   22 SLTLGRFNVSDKREWFYDKSLDGILLSFDLKPVDTRFSLSINREELFGSDLLRHNDVDPVNNLIAVAEHEPFKNIDLELTAYSIIRHDRSEDNDSPIFYGVTSNGKLVDERIRWWSGLAWARGEDDDENIRGFGFDVGAT 441
            S+ +GR    D+R+W YD  LD       L  +     LS++R  L   DLL  +  D VNN  A   +   +  +  + AY +I  DRS++++SPIF+G+ S+G +  E + +W  LA+  G+D  + IRG GFDVG+T
Sbjct:  135 SIQVGRQRFDDERQWLYDAELDAARAFVQLSGL--LVDLSVSRGGLVDRDLLNDDVSDRVNNYFAYGTYTISE--ETYVAAYFLIFDDRSDEDNSPIFFGIHSDGDIT-ESLGYWLELAYVAGKDGSDKIRGVGFDVGST 269          
BLAST of mRNA_H-canaliculatus_M_contigs78243.1.1 vs.
Match: Alginate (production protein AlgE n=2 Tax=Roseovarius aestuarii TaxID=475083 RepID=A0A1X7BUM8_9RHOB)

HSP 1 Score: 64.7 bits (156), Expect = 2.290e-9
Identity = 45/140 (32.14%), Postives = 69/140 (49.29%), Query Frame = 1
Query:   22 SLTLGRFNVSDKREWFYDKSLDGILLSFDLKPVDTRFSLSINREELFGSDLLRHNDVDPVNNLIAVAEHEPFKNIDLELTAYSIIRHDRSEDNDSPIFYGVTSNGKLVDERIRWWSGLAWARGEDDDENIRGFGFDVGAT 441
            +LTLGR++V+D REW +D+ LDGI   F  +       L   RE LF  + L     D  +   A A     +N    L  YS+ +  R   +   ++ G +  G   ++ I +W+  A  RG + +  +RG+GFDVG T
Sbjct:  140 TLTLGRWSVTDDREWLFDQELDGI--HFFRRGEKFAVELFYARERLFNQEFLSSEGDDEPDYFYARAYARLTENNVGSL--YSLFQMGRDPGDPDLLWLGASLAGTATND-ITYWAEFAHVRGTEANRKVRGYGFDVGLT 274          
BLAST of mRNA_H-canaliculatus_M_contigs78243.1.1 vs.
Match: alginate (export family protein n=1 Tax=Erwinia endophytica TaxID=1563158 RepID=UPI00186B6D73)

HSP 1 Score: 54.3 bits (129), Expect = 9.560e-6
Identity = 42/147 (28.57%), Postives = 71/147 (48.30%), Query Frame = 1
Query:    7 VVRKTSLTLGRFNVSDKREWFYDKSLDGILLSFDLKPVDTRFSLSINREELFGSDLLRHNDVDPVNNLIAV-AEHEPFKNIDLELTAYSIIRHDRSE-DNDSPIFYGVTSNGKLVDERIRWWSGLAWARGEDDDENIRGFGFDVGAT 441
            V+  +++ LGR+ + D+R W +D+ +DG+   F  K +     +   R   +  +LL  +     NNL+ + +++E  K     L  Y + +HDRS   ND  +  GV S          W   +   RG  DD+++RG+  D GAT
Sbjct:  136 VIPGSTVRLGRWLLRDERRWLFDEDIDGVYARFGDKWLT---EVGAGRVNYWQRNLLDSSTRGDNNNLMTLLSQYEVSKRG--RLGGYVVWQHDRSAAKNDRQLNLGVRSWSSQRGALSHWLE-VGTVRGRQDDQSLRGYAVDGGAT 276          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs78243.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
Alginate_exp9.710e-2236.55domain-containing protein n=2 Tax=Denitrobaculum t... [more]
alginate5.230e-2035.86export family protein n=1 Tax=Pelagibius litoralis... [more]
Alginate_exp9.840e-1935.86domain-containing protein n=1 Tax=Candidatus Abyss... [more]
Alginate_exp1.200e-1736.43domain-containing protein (Fragment) n=1 Tax=Candi... [more]
Alginate2.290e-932.14production protein AlgE n=2 Tax=Roseovarius aestua... [more]
alginate9.560e-628.57export family protein n=1 Tax=Erwinia endophytica ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs78243contigH-canaliculatus_M_contigs78243:20..460 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog365044.Pnap_2178
PFAMsAlginate_exp
Model size441
Max annot lvl28216|Betaproteobacteria
KEGG koko:K16081
KEGG TC1.B.13.1
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.14e-12
EggNOG OGs2A2RR@1|root,30R50@2|Bacteria,1RF6F@1224|Proteobacteria,2VYJ0@28216|Betaproteobacteria
DescriptionAlginate export
Cds size441
COG categoryS
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854118.9927895-CDS-H-canaliculatus_M_contigs78243:19..4601696854118.9927895-CDS-H-canaliculatus_M_contigs78243:19..460Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs78243 20..460 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs78243.1.1prot_H-canaliculatus_M_contigs78243.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs78243 20..460 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs78243.1.1

>prot_H-canaliculatus_M_contigs78243.1.1 ID=prot_H-canaliculatus_M_contigs78243.1.1|Name=mRNA_H-canaliculatus_M_contigs78243.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=147bp
NNVVRKTSLTLGRFNVSDKREWFYDKSLDGILLSFDLKPVDTRFSLSINR
EELFGSDLLRHNDVDPVNNLIAVAEHEPFKNIDLELTAYSIIRHDRSEDN
DSPIFYGVTSNGKLVDERIRWWSGLAWARGEDDDENIRGFGFDVGAT
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mRNA from alignment at H-canaliculatus_M_contigs78243:20..460-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs78243.1.1 ID=mRNA_H-canaliculatus_M_contigs78243.1.1|Name=mRNA_H-canaliculatus_M_contigs78243.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=441bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78243:20..460- (Hapterophycus canaliculatus Oshoro7m male)
AACAATGTCGTCAGAAAAACCTCACTTACTCTTGGCAGATTCAATGTTAG TGATAAGCGTGAATGGTTCTACGATAAAAGTCTCGACGGCATACTGTTGT CGTTTGACCTTAAACCTGTCGATACTCGGTTTAGTCTGTCGATCAATAGG GAGGAGCTTTTTGGGTCAGACCTGCTTCGTCACAACGATGTTGATCCAGT CAACAACTTGATAGCGGTTGCAGAGCACGAGCCCTTCAAAAATATAGACT TGGAACTTACGGCTTATTCCATCATCCGCCATGACCGTTCGGAAGATAAT GATAGTCCGATATTCTACGGTGTTACTTCAAACGGTAAGCTAGTAGATGA AAGAATCAGATGGTGGTCGGGCCTGGCATGGGCGCGCGGTGAGGATGATG ATGAAAACATCAGGGGTTTTGGTTTTGATGTCGGTGCGACG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs78243:20..460-

>mRNA_H-canaliculatus_M_contigs78243.1.1 ID=mRNA_H-canaliculatus_M_contigs78243.1.1|Name=mRNA_H-canaliculatus_M_contigs78243.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=441bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78243:20..460- (Hapterophycus canaliculatus Oshoro7m male)
AACAATGTCGTCAGAAAAACCTCACTTACTCTTGGCAGATTCAATGTTAG
TGATAAGCGTGAATGGTTCTACGATAAAAGTCTCGACGGCATACTGTTGT
CGTTTGACCTTAAACCTGTCGATACTCGGTTTAGTCTGTCGATCAATAGG
GAGGAGCTTTTTGGGTCAGACCTGCTTCGTCACAACGATGTTGATCCAGT
CAACAACTTGATAGCGGTTGCAGAGCACGAGCCCTTCAAAAATATAGACT
TGGAACTTACGGCTTATTCCATCATCCGCCATGACCGTTCGGAAGATAAT
GATAGTCCGATATTCTACGGTGTTACTTCAAACGGTAAGCTAGTAGATGA
AAGAATCAGATGGTGGTCGGGCCTGGCATGGGCGCGCGGTGAGGATGATG
ATGAAAACATCAGGGGTTTTGGTTTTGATGTCGGTGCGACG
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