mRNA_H-canaliculatus_M_contigs78214.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs78214.2.1
Unique NamemRNA_H-canaliculatus_M_contigs78214.2.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs78214.2.1 vs.
Match: Peptidase (family M50 n=1 Tax=Rhodopirellula pilleata TaxID=2714738 RepID=A0A5C6AB04_9BACT)

HSP 1 Score: 182 bits (463), Expect = 1.180e-55
Identity = 87/115 (75.65%), Postives = 101/115 (87.83%), Query Frame = 1
Query:    1 VNAFNAMPYPISDLSQFTTGERIESIGLMAGVFFYVLPSVLWALLNLVPVFPLDGGRVMKSLVLLSGDRSDTWIWISLVSAGGVAFYALTNQQPFLGLMFLSLAAGNYQMLQRPY 345
            VNAF  MP+P+S+L+++T G  IE+IG M+ VFFYVLPSVLWALLNL+PVFPLDGGRVM+SLVL+SGDRSDTWIWISLVSAG VA Y L   QPF+GL+FLSLA GNYQMLQ+PY
Sbjct:  151 VNAFANMPWPLSNLTRYTGGAPIENIGAMSLVFFYVLPSVLWALLNLLPVFPLDGGRVMRSLVLISGDRSDTWIWISLVSAGAVAIYGLQGGQPFMGLLFLSLAVGNYQMLQQPY 265          
BLAST of mRNA_H-canaliculatus_M_contigs78214.2.1 vs.
Match: Peptidase (family M50 n=1 Tax=Rhodopirellula solitaria TaxID=2527987 RepID=A0A5C5YGD2_9BACT)

HSP 1 Score: 177 bits (450), Expect = 1.220e-53
Identity = 85/116 (73.28%), Postives = 100/116 (86.21%), Query Frame = 1
Query:    1 VNAFNAMPYPISDLSQFTTGERIESIGLMAGVFFYVLPSVLWALLNLVPVFPLDGGRVMKSLVLLSGDRSDTWIWISLVSAGGVAFYALTNQ-QPFLGLMFLSLAAGNYQMLQRPY 345
            ++AF +MP+P++ L +F  GE IESI LM  VFFYV PSVLWALLNLVPVFPLDGGRVM+SLVLLSGDRSDTW+WIS++SAGG+AFYALT   QP +GL+FLSLA GNYQM+Q PY
Sbjct:  154 ISAFASMPWPLNGLGRFFDGEPIESIALMTMVFFYVFPSVLWALLNLVPVFPLDGGRVMRSLVLLSGDRSDTWLWISMISAGGMAFYALTQGGQPIMGLLFLSLAFGNYQMMQTPY 269          
BLAST of mRNA_H-canaliculatus_M_contigs78214.2.1 vs.
Match: Peptidase (family M50 n=1 Tax=Planctomycetes bacterium Poly21 TaxID=2528014 RepID=A0A5C6C5J6_9BACT)

HSP 1 Score: 171 bits (432), Expect = 6.420e-51
Identity = 83/116 (71.55%), Postives = 94/116 (81.03%), Query Frame = 1
Query:    1 VNAFNAMPYPISDLSQFTTGERIESIGLMAGVFFYVLPSVLWALLNLVPVFPLDGGRVMKSLVLLSGDRSDTWIWISLVSAGGVAFYALTN-QQPFLGLMFLSLAAGNYQMLQRPY 345
            V AF +MP+P+S L     G  IESI L+  VFFYV PSVLWALLNLVPVFPLDGGRVM+SLVLLSGDRSDTW+WIS++SAG VAFYALT   QP +GL+FLSL  GNYQM+Q PY
Sbjct:  154 VAAFGSMPWPLSQLDGVFDGRPIESIALLTMVFFYVFPSVLWALLNLVPVFPLDGGRVMRSLVLLSGDRSDTWLWISMISAGAVAFYALTQGHQPIMGLLFLSLGFGNYQMMQNPY 269          
BLAST of mRNA_H-canaliculatus_M_contigs78214.2.1 vs.
Match: Zn-dependent (protease n=2 Tax=Rhodopirellula TaxID=265488 RepID=M5TAK9_9BACT)

HSP 1 Score: 165 bits (418), Expect = 8.110e-49
Identity = 78/116 (67.24%), Postives = 94/116 (81.03%), Query Frame = 1
Query:    1 VNAFNAMPYPISDLSQFTTGERIESIGLMAGVFFYVLPSVLWALLNLVPVFPLDGGRVMKSLVLLSGDRSDTWIWISLVSAGGVAFYALTN-QQPFLGLMFLSLAAGNYQMLQRPY 345
            V AF  MP+P++ L  +  GE++ S+GLMA + FYV PSVLWALLNL+PVFPLDGGRVM+SLVL+SGDR DTW+WIS+ SAG VAFYALT   QP +GL+FLSL  GNYQM+Q PY
Sbjct:  153 VIAFALMPWPLNGLRPWFEGEQVASVGLMAAILFYVFPSVLWALLNLLPVFPLDGGRVMRSLVLMSGDRGDTWLWISMASAGVVAFYALTQGHQPIMGLLFLSLGFGNYQMMQSPY 268          
BLAST of mRNA_H-canaliculatus_M_contigs78214.2.1 vs.
Match: Peptidase (M50 n=1 Tax=Rhodopirellula sallentina SM41 TaxID=1263870 RepID=M5U0L0_9BACT)

HSP 1 Score: 165 bits (417), Expect = 1.150e-48
Identity = 80/116 (68.97%), Postives = 93/116 (80.17%), Query Frame = 1
Query:    1 VNAFNAMPYPISDLSQFTTGERIESIGLMAGVFFYVLPSVLWALLNLVPVFPLDGGRVMKSLVLLSGDRSDTWIWISLVSAGGVAFYALTNQ-QPFLGLMFLSLAAGNYQMLQRPY 345
            V AF AMP+P+  L  +  G+ + SIGL A +FFYV PSVLWALLNLVPVFPLDGGRVM+SLVL+SGDR DTW+WIS+VSAG VAFYALT    P +GL+FLSL  GNYQM+Q PY
Sbjct:  153 VTAFYAMPWPLDRLVSWFPGKPVTSIGLNATIFFYVFPSVLWALLNLVPVFPLDGGRVMRSLVLMSGDRGDTWLWISMVSAGAVAFYALTQGGAPIMGLLFLSLGFGNYQMMQSPY 268          
BLAST of mRNA_H-canaliculatus_M_contigs78214.2.1 vs.
Match: Peptidase (M50 n=8 Tax=Rhodopirellula TaxID=265488 RepID=L7C9P4_RHOBT)

HSP 1 Score: 142 bits (358), Expect = 8.200e-40
Identity = 64/114 (56.14%), Postives = 83/114 (72.81%), Query Frame = 1
Query:    1 VNAFNAMPYPISDLSQFTTGERIESIGLMAGVFFYVLPSVLWALLNLVPVFPLDGGRVMKSLVLLSGDRSDTWIWISLVSAGGVAFYALTNQQPFLGLMFLSLAAGNYQMLQRP 342
            V AF  MPYP+S +     G   ES+GL A V FYV PSV+WA+LNL+PVFPLDGGR+M+SLV++ G ++DTW+WIS++  G    Y  ++   FLG++FLSLA GNYQMLQ P
Sbjct:  150 VMAFALMPYPLSSIPGILEGNDFESVGLFALVTFYVWPSVIWAVLNLIPVFPLDGGRIMRSLVMMGGGQTDTWLWISMIVGGACTAYGFSSGNMFLGILFLSLAVGNYQMLQGP 263          
BLAST of mRNA_H-canaliculatus_M_contigs78214.2.1 vs.
Match: Zinc (metalloprotease n=1 Tax=Rhodopirellula islandica TaxID=595434 RepID=A0A0J1EKK4_RHOIS)

HSP 1 Score: 139 bits (349), Expect = 1.850e-38
Identity = 60/112 (53.57%), Postives = 82/112 (73.21%), Query Frame = 1
Query:    1 VNAFNAMPYPISDLSQFTTGERIESIGLMAGVFFYVLPSVLWALLNLVPVFPLDGGRVMKSLVLLSGDRSDTWIWISLVSAGGVAFYALTNQQPFLGLMFLSLAAGNYQMLQ 336
            + AF  MPYP+  L     G   +S+G++A V FYV PSVLWA+LNL+PVFPLDGGR+M+SLV++ G ++DTW+WIS++  G    Y  ++   FLG++FLSLA GNYQM+Q
Sbjct:  150 ITAFALMPYPLDSLPGVLEGNDFDSVGMIALVTFYVWPSVLWAVLNLIPVFPLDGGRIMRSLVMMGGGQTDTWLWISMIIGGACTMYGFSSGNMFLGILFLSLAVGNYQMMQ 261          
BLAST of mRNA_H-canaliculatus_M_contigs78214.2.1 vs.
Match: Peptidase (n=1 Tax=Rhodopirellula bahusiensis TaxID=2014065 RepID=A0A2G1VZ28_9BACT)

HSP 1 Score: 139 bits (349), Expect = 1.850e-38
Identity = 61/112 (54.46%), Postives = 82/112 (73.21%), Query Frame = 1
Query:    1 VNAFNAMPYPISDLSQFTTGERIESIGLMAGVFFYVLPSVLWALLNLVPVFPLDGGRVMKSLVLLSGDRSDTWIWISLVSAGGVAFYALTNQQPFLGLMFLSLAAGNYQMLQ 336
            V AF  MPYPI+ L     G   +++G+ A V FY+ PSVLWA+LNL+PVFPLDGGR+M+SLV++ G ++DTW+WIS++  G    Y  T+ Q FLG++FLSL  GNYQM+Q
Sbjct:  150 VMAFALMPYPINALPGVLEGNDFDNVGMFALVTFYIWPSVLWAVLNLIPVFPLDGGRIMRSLVMMGGGQTDTWLWISMIVGGACTMYGFTSGQMFLGILFLSLTVGNYQMMQ 261          
BLAST of mRNA_H-canaliculatus_M_contigs78214.2.1 vs.
Match: site-2 (protease family protein n=2 Tax=unclassified Rhodopirellula TaxID=2624920 RepID=UPI001E323FFD)

HSP 1 Score: 135 bits (340), Expect = 7.230e-37
Identity = 64/112 (57.14%), Postives = 80/112 (71.43%), Query Frame = 1
Query:    1 VNAFNAMPYPISDLSQFTTGERIESIGLMAGVFFYVLPSVLWALLNLVPVFPLDGGRVMKSLVLLSGDRSDTWIWISLVSAGGVAFYALTNQQPFLGLMFLSLAAGNYQMLQ 336
            V AF+ MP+P   +     G  I+S GL+A V FYV PSVLWA LNL+PVFPLDGGR+M+SLVL+ G ++DTW+WIS++  G    Y     Q FLG++FLSLA GNYQMLQ
Sbjct:  174 VLAFSLMPWPFYLIPGVLEGNDIDSPGLLALVTFYVWPSVLWAALNLIPVFPLDGGRIMRSLVLMGGGQTDTWLWISMIVGGACTIYGFQGGQMFLGILFLSLAVGNYQMLQ 285          
BLAST of mRNA_H-canaliculatus_M_contigs78214.2.1 vs.
Match: Peptidase (family M50 n=1 Tax=Planctomycetes bacterium CA13 TaxID=2527986 RepID=A0A5C5Z6N2_9BACT)

HSP 1 Score: 128 bits (322), Expect = 2.220e-34
Identity = 62/108 (57.41%), Postives = 79/108 (73.15%), Query Frame = 1
Query:   16 AMPYPISDLSQFTTGERIESIGLMAGVFFYVLPSVLWALLNLVPVFPLDGGRVMKSLVLLSGDRSDTWIWISLVSAGGVAFYALTNQQPFLGLMFLSLAAGNYQMLQR 339
            AMP  +S +     GE I+SIGL A V FY+ PSVLWALLNLVPV+PLDGGR+M S+VL+ G R D  +WIS+++AG +  Y   N Q FLG++FLSLA  NYQ+LQ+
Sbjct:  156 AMPLGLSRIFSVLDGEPIQSIGLYAMVLFYIFPSVLWALLNLVPVWPLDGGRIMNSVVLIGGGRRDQALWISVIAAGLLTAYGFKNGQTFLGILFLSLAISNYQVLQQ 263          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs78214.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Peptidase1.180e-5575.65family M50 n=1 Tax=Rhodopirellula pilleata TaxID=2... [more]
Peptidase1.220e-5373.28family M50 n=1 Tax=Rhodopirellula solitaria TaxID=... [more]
Peptidase6.420e-5171.55family M50 n=1 Tax=Planctomycetes bacterium Poly21... [more]
Zn-dependent8.110e-4967.24protease n=2 Tax=Rhodopirellula TaxID=265488 RepID... [more]
Peptidase1.150e-4868.97M50 n=1 Tax=Rhodopirellula sallentina SM41 TaxID=1... [more]
Peptidase8.200e-4056.14M50 n=8 Tax=Rhodopirellula TaxID=265488 RepID=L7C9... [more]
Zinc1.850e-3853.57metalloprotease n=1 Tax=Rhodopirellula islandica T... [more]
Peptidase1.850e-3854.46n=1 Tax=Rhodopirellula bahusiensis TaxID=2014065 R... [more]
site-27.230e-3757.14protease family protein n=2 Tax=unclassified Rhodo... [more]
Peptidase2.220e-3457.41family M50 n=1 Tax=Planctomycetes bacterium CA13 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs78214contigH-canaliculatus_M_contigs78214:155..502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog595460.RRSWK_04750
PFAMsPeptidase_M50
Model size348
Max annot lvl203682|Planctomycetes
Hectar predicted targeting categorysignal anchor
Exons1
Evalue1.68e-48
EggNOG OGsCOG1994@1|root,COG1994@2|Bacteria,2J0CK@203682|Planctomycetes
DescriptionPFAM peptidase M50
Cds size330
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854118.5569017-CDS-H-canaliculatus_M_contigs78214:154..4841696854118.5569017-CDS-H-canaliculatus_M_contigs78214:154..484Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs78214 155..484 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854118.56882-UTR-H-canaliculatus_M_contigs78214:484..5021696854118.56882-UTR-H-canaliculatus_M_contigs78214:484..502Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs78214 485..502 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs78214.2.1prot_H-canaliculatus_M_contigs78214.2.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs78214 155..484 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs78214.2.1

>prot_H-canaliculatus_M_contigs78214.2.1 ID=prot_H-canaliculatus_M_contigs78214.2.1|Name=mRNA_H-canaliculatus_M_contigs78214.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=110bp
MPYPISDLSQFTTGERIESIGLMAGVFFYVLPSVLWALLNLVPVFPLDGG
RVMKSLVLLSGDRSDTWIWISLVSAGGVAFYALTNQQPFLGLMFLSLAAG
NYQMLQRPY*
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mRNA from alignment at H-canaliculatus_M_contigs78214:155..502-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs78214.2.1 ID=mRNA_H-canaliculatus_M_contigs78214.2.1|Name=mRNA_H-canaliculatus_M_contigs78214.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=348bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78214:155..502- (Hapterophycus canaliculatus Oshoro7m male)
GTCAACGCCTTCAATGCCATGCCGTATCCGATCAGTGATCTGTCGCAGTT CACGACGGGCGAACGAATCGAAAGCATCGGTTTGATGGCTGGCGTTTTCT TTTACGTGTTGCCAAGTGTCCTTTGGGCGTTGTTGAATTTAGTTCCAGTT TTTCCGCTCGACGGTGGCCGCGTGATGAAATCACTCGTGTTGCTTAGTGG TGATCGCAGCGACACATGGATTTGGATCAGTTTAGTTAGTGCCGGTGGTG TCGCGTTCTATGCGTTGACGAACCAACAACCATTCCTTGGTTTGATGTTC CTTTCATTGGCCGCTGGCAATTACCAAATGCTGCAACGGCCTTATTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs78214:155..502-

>mRNA_H-canaliculatus_M_contigs78214.2.1 ID=mRNA_H-canaliculatus_M_contigs78214.2.1|Name=mRNA_H-canaliculatus_M_contigs78214.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=330bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78214:155..502- (Hapterophycus canaliculatus Oshoro7m male)
ATGCCGTATCCGATCAGTGATCTGTCGCAGTTCACGACGGGCGAACGAAT
CGAAAGCATCGGTTTGATGGCTGGCGTTTTCTTTTACGTGTTGCCAAGTG
TCCTTTGGGCGTTGTTGAATTTAGTTCCAGTTTTTCCGCTCGACGGTGGC
CGCGTGATGAAATCACTCGTGTTGCTTAGTGGTGATCGCAGCGACACATG
GATTTGGATCAGTTTAGTTAGTGCCGGTGGTGTCGCGTTCTATGCGTTGA
CGAACCAACAACCATTCCTTGGTTTGATGTTCCTTTCATTGGCCGCTGGC
AATTACCAAATGCTGCAACGGCCTTATTAA
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