mRNA_H-canaliculatus_M_contigs78153.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs78153.1.1
Unique NamemRNA_H-canaliculatus_M_contigs78153.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs78153.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J5_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 4.180e-15
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 NPTVSRSAKVDMVDKAFDSKSKTSSVTKNLLLTMAGNARLGDTEK 135
            NPTVSRSAKV+MVDKAFD+KSKTSSVTKNLLL MAGNARL D EK
Sbjct:  157 NPTVSRSAKVEMVDKAFDAKSKTSSVTKNLLLAMAGNARLADAEK 201
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BLAST of mRNA_H-canaliculatus_M_contigs78153.1.1 vs.
Match: ATP (synthase O subunit, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJT6_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 4.840e-15
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 NPTVSRSAKVDMVDKAFDSKSKTSSVTKNLLLTMAGNARLGDTEK 135
            NPTVSRSAKV+MVDKAFD+KSKTSSVTKNLLL MAGNARL D EK
Sbjct:  173 NPTVSRSAKVEMVDKAFDAKSKTSSVTKNLLLAMAGNARLADAEK 217
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs78153.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized4.180e-1588.89protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
ATP4.840e-1588.89synthase O subunit, mitochondrial n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs78153contigH-canaliculatus_M_contigs78153:4..138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FJT6
Preferred nameATP5
PFAMsOSCP
Model size135
Max annot lvl2759|Eukaryota
KEGG koko:K02113,ko:K02137
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko00195,ko01100,ko04714,ko05010,ko05012,ko05016,map00190,map00195,map01100,map04714,map05010,map05012,map05016
KEGG ModuleM00157,M00158
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005753,GO:0005886,GO:0008270,GO:0009507,GO:0009536,GO:0016020,GO:0016469,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045259,GO:0046872,GO:0046914,GO:0050897,GO:0071944,GO:0098796,GO:0098798,GO:0098800
Exons1
Evalue7.94e-16
EggNOG OGsCOG0712@1|root,KOG1662@2759|Eukaryota
Ec32 ortholog descriptionATP synthase O subunit, mitochondrial precursor
Ec32 orthologEc-06_010220.1
Descriptionproton-transporting ATP synthase activity, rotational mechanism
Cds size135
COG categoryC
BRITEko00000,ko00001,ko00002,ko00194
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854117.9381335-CDS-H-canaliculatus_M_contigs78153:3..1381696854117.9381335-CDS-H-canaliculatus_M_contigs78153:3..138Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs78153 4..138 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs78153.1.1prot_H-canaliculatus_M_contigs78153.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs78153 4..138 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs78153.1.1

>prot_H-canaliculatus_M_contigs78153.1.1 ID=prot_H-canaliculatus_M_contigs78153.1.1|Name=mRNA_H-canaliculatus_M_contigs78153.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=45bp
NPTVSRSAKVDMVDKAFDSKSKTSSVTKNLLLTMAGNARLGDTEK
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mRNA from alignment at H-canaliculatus_M_contigs78153:4..138+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs78153.1.1 ID=mRNA_H-canaliculatus_M_contigs78153.1.1|Name=mRNA_H-canaliculatus_M_contigs78153.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=135bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78153:4..138+ (Hapterophycus canaliculatus Oshoro7m male)
AACCCCACCGTGTCGCGGAGCGCCAAGGTGGACATGGTGGACAAGGCTTT
CGACTCGAAGTCCAAGACGTCCTCCGTGACCAAGAACCTGCTGCTCACCA
TGGCCGGCAACGCCAGGCTGGGCGACACCGAGAAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs78153:4..138+

>mRNA_H-canaliculatus_M_contigs78153.1.1 ID=mRNA_H-canaliculatus_M_contigs78153.1.1|Name=mRNA_H-canaliculatus_M_contigs78153.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=135bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78153:4..138+ (Hapterophycus canaliculatus Oshoro7m male)
AACCCCACCGTGTCGCGGAGCGCCAAGGTGGACATGGTGGACAAGGCTTT
CGACTCGAAGTCCAAGACGTCCTCCGTGACCAAGAACCTGCTGCTCACCA
TGGCCGGCAACGCCAGGCTGGGCGACACCGAGAAG
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