mRNA_H-canaliculatus_M_contigs78144.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-canaliculatus_M_contigs78144.1.1
Unique Name	mRNA_H-canaliculatus_M_contigs78144.1.1
Type	mRNA
Organism	Hapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)

Homology

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BLAST of mRNA_H-canaliculatus_M_contigs78144.1.1 vs.
Match: Bcr/CflA (family efflux transporter n=1 Tax=Sulfitobacter sp. TaxID=1903071 RepID=A0A3D2FCH2_9RHOB)

HSP 1 Score: 288 bits (737), Expect = 2.020e-94
Identity = 138/165 (83.64%), Postives = 149/165 (90.30%), Query Frame = 1

Query:    1 EESASMIAYVTMGMAVVPMISPAIGGFLDELYGWKANFWAFFFVGGALFALVWRDLGETVKPSGLTLTQQFKEYPELLRSPRFWGYCMASALSSGAFFAYLGGGPFVGSVVFGMSPKWVGVFFGAPAVGYFAGNWITGRNAKRLGVNKLILWGAIAVSCGTALML 495
            E+SASM+AYVTMGMAVVPMISPAIGG LDE +GW A FWAF  +G ALF L+WRDLGET KPSGLTL+QQF+EYPELL+S RFWGYC+ASA SSGAFFAYLGGGPFVGS VFGMSPKWVG+FFGAPAVGYF GNW TGRNAKRLGVNKLILWGAIAV+ GT LML
Sbjct:  135 EQSASMLAYVTMGMAVVPMISPAIGGILDEFFGWHAIFWAFLIMGAALFVLIWRDLGETAKPSGLTLSQQFREYPELLKSKRFWGYCLASAFSSGAFFAYLGGGPFVGSDVFGMSPKWVGIFFGAPAVGYFVGNWYTGRNAKRLGVNKLILWGAIAVTAGTVLML 299

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BLAST of mRNA_H-canaliculatus_M_contigs78144.1.1 vs.
Match: Bcr/CflA (family efflux transporter n=1 Tax=Ascidiaceihabitans donghaensis TaxID=1510460 RepID=A0A2R8BGH2_9RHOB)

HSP 1 Score: 261 bits (668), Expect = 5.280e-84
Identity = 127/165 (76.97%), Postives = 141/165 (85.45%), Query Frame = 1

Query:    1 EESASMIAYVTMGMAVVPMISPAIGGFLDELYGWKANFWAFFFVGGALFALVWRDLGETVKPSGLTLTQQFKEYPELLRSPRFWGYCMASALSSGAFFAYLGGGPFVGSVVFGMSPKWVGVFFGAPAVGYFAGNWITGRNAKRLGVNKLILWGAIAVSCGTALML 495
            ++SASMI YVTMGMAVVPM+SPAIGG L+E +GW++NFWAFF VG  LF LVW DLGET KPSGLTL QQFKEYPELLRSPRFWGY MAS  S+GAFFAYLGGGPFVGS VFG+S  WVG+ FGAPA+GYF GNWITGRNA+RLGVNKLIL G + +  G ALML
Sbjct:  135 DQSASMIGYVTMGMAVVPMVSPAIGGILNEFFGWQSNFWAFFIVGLVLFCLVWNDLGETSKPSGLTLAQQFKEYPELLRSPRFWGYSMASGFSTGAFFAYLGGGPFVGSDVFGLSSVWVGICFGAPAIGYFTGNWITGRNAQRLGVNKLILAGCLVLVFGMALML 299

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BLAST of mRNA_H-canaliculatus_M_contigs78144.1.1 vs.
Match: Bcr/CflA (family efflux transporter n=2 Tax=Primorskyibacter sedentarius TaxID=745311 RepID=A0A4R3JI71_9RHOB)

HSP 1 Score: 238 bits (608), Expect = 1.410e-74
Identity = 115/163 (70.55%), Postives = 133/163 (81.60%), Query Frame = 1

Query:    1 EESASMIAYVTMGMAVVPMISPAIGGFLDELYGWKANFWAFFFVGGALFALVWRDLGETVKPSGLTLTQQFKEYPELLRSPRFWGYCMASALSSGAFFAYLGGGPFVGSVVFGMSPKWVGVFFGAPAVGYFAGNWITGRNAKRLGVNKLILWGAIAVSCGTAL 489
            + SASMI YVTMGM+VVPMI P IGG+LDEL GWKANFW    +G ALFAL WRDLGET + SGLTL  QF EYPELLRSPRFWGY MA+  SSGAFFAY+GG PFVGSVVFGMSP  +G+FFGAPA+GYF GN++T R A RLG+N+L+LWG++ V+ G  L
Sbjct:  163 DRSASMIGYVTMGMSVVPMIGPMIGGYLDELLGWKANFWLLLALGVALFALAWRDLGETAQRSGLTLRAQFAEYPELLRSPRFWGYAMAAGFSSGAFFAYVGGAPFVGSVVFGMSPSTLGLFFGAPALGYFFGNYMTARFATRLGINRLVLWGSLCVALGIGL 325

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BLAST of mRNA_H-canaliculatus_M_contigs78144.1.1 vs.
Match: Bcr/CflA (family efflux transporter n=2 Tax=Rhodobacterales TaxID=204455 RepID=A0A8J7J7J1_9RHOB)

HSP 1 Score: 236 bits (603), Expect = 3.340e-74
Identity = 111/165 (67.27%), Postives = 134/165 (81.21%), Query Frame = 1

Query:    1 EESASMIAYVTMGMAVVPMISPAIGGFLDELYGWKANFWAFFFVGGALFALVWRDLGETVKPSGLTLTQQFKEYPELLRSPRFWGYCMASALSSGAFFAYLGGGPFVGSVVFGMSPKWVGVFFGAPAVGYFAGNWITGRNAKRLGVNKLILWGAIAVSCGTALML 495
            +++ASMI YVTMGMAVVPM+ PA+GG LD+++GW+ANFW  F +GGA+ AL+W DLGET   SGLTLT QF EYPELLRSPRFWGY MASALSSGAFF+YLGG PFVG+V+FGM P  +G+FFGAPA+GYF GN++TGR A R G+N +ILWG +    G  L L
Sbjct:  135 DKAASMIGYVTMGMAVVPMVGPAVGGALDQVFGWQANFWLLFLLGGAMLALIWADLGETGSKSGLTLTAQFAEYPELLRSPRFWGYSMASALSSGAFFSYLGGAPFVGTVIFGMDPAVLGLFFGAPAIGYFLGNFVTGRFATRFGINSMILWGCLMNCLGILLSL 299

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BLAST of mRNA_H-canaliculatus_M_contigs78144.1.1 vs.
Match: Bcr/CflA (family efflux transporter n=1 Tax=Roseobacter ponti TaxID=1891787 RepID=A0A858SR39_9RHOB)

HSP 1 Score: 233 bits (593), Expect = 1.230e-72
Identity = 111/165 (67.27%), Postives = 131/165 (79.39%), Query Frame = 1

Query:    1 EESASMIAYVTMGMAVVPMISPAIGGFLDELYGWKANFWAFFFVGGALFALVWRDLGETVKPSGLTLTQQFKEYPELLRSPRFWGYCMASALSSGAFFAYLGGGPFVGSVVFGMSPKWVGVFFGAPAVGYFAGNWITGRNAKRLGVNKLILWGAIAVSCGTALML 495
            +++ASMI YVTMGMAVVPM+SP  GG LDEL+GWKANFWA FF+GG    L W D GET +PS  TLT+QF EYPELL SPRFWGY +A+A  SG+FFAYLGGGPFVGSVVFG+SP WVG+FFGAPA+GYF GN  TG  A+R+G+N+LIL G +  + G  L L
Sbjct:  135 DQAASMIGYVTMGMAVVPMVSPMFGGVLDELFGWKANFWALFFLGGLTLWLAWADQGETARPSDRTLTEQFAEYPELLTSPRFWGYSLAAAFCSGSFFAYLGGGPFVGSVVFGLSPFWVGIFFGAPAIGYFFGNMCTGLFAQRIGINRLILTGCLINASGAVLSL 299

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BLAST of mRNA_H-canaliculatus_M_contigs78144.1.1 vs.
Match: Bcr/CflA (family efflux transporter n=1 Tax=Sulfitobacter sp. SK011 TaxID=1389004 RepID=A0A345QCN8_9RHOB)

HSP 1 Score: 230 bits (587), Expect = 9.290e-72
Identity = 107/165 (64.85%), Postives = 134/165 (81.21%), Query Frame = 1

Query:    1 EESASMIAYVTMGMAVVPMISPAIGGFLDELYGWKANFWAFFFVGGALFALVWRDLGETVKPSGLTLTQQFKEYPELLRSPRFWGYCMASALSSGAFFAYLGGGPFVGSVVFGMSPKWVGVFFGAPAVGYFAGNWITGRNAKRLGVNKLILWGAIAVSCGTALML 495
            ++SAS+I YVTMGMA+VPM+SPA+GG L+EL+ W+A+FWA F +G  +  LVW D+GET + SG +L +QF EYPELLRSPRFWGY +AS   SGAFFAYLGG PFVGSVVF +SP W+G++FGAPAVGYF GN+ITGR A R G+NKL+LWG +A + G A+ L
Sbjct:  135 DQSASVIGYVTMGMALVPMVSPALGGLLEELFNWQASFWALFVIGVGVMTLVWVDMGETARASGKSLFEQFSEYPELLRSPRFWGYALASGFCSGAFFAYLGGAPFVGSVVFNLSPFWLGIYFGAPAVGYFVGNFITGRFATRFGINKLVLWGCLANAFGGAVSL 299

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BLAST of mRNA_H-canaliculatus_M_contigs78144.1.1 vs.
Match: Bcr/CflA (family efflux transporter n=2 Tax=Puniceibacterium sediminis TaxID=1608407 RepID=A0A238XAG5_9RHOB)

HSP 1 Score: 230 bits (587), Expect = 1.010e-71
Identity = 108/165 (65.45%), Postives = 134/165 (81.21%), Query Frame = 1

Query:    1 EESASMIAYVTMGMAVVPMISPAIGGFLDELYGWKANFWAFFFVGGALFALVWRDLGETVKPSGLTLTQQFKEYPELLRSPRFWGYCMASALSSGAFFAYLGGGPFVGSVVFGMSPKWVGVFFGAPAVGYFAGNWITGRNAKRLGVNKLILWGAIAVSCGTALML 495
            E++ASMI YVTMG+AVVPMI PAIGG L EL+GW++NFWA   +G ALF L WRDLGET   S LTL QQF+EYPELLR+PRFWGY +AS  +SGAFFAYLGG PFVGSVVF +SP  +G++FGAPA+GYFAGN+++GR + R+GVN+++ WG +  + G AL L
Sbjct:  137 EQAASMIGYVTMGVAVVPMIGPAIGGLLGELFGWQSNFWALLAIGAALFWLTWRDLGETAVKSTLTLAQQFREYPELLRAPRFWGYALASGFASGAFFAYLGGAPFVGSVVFSLSPSMLGLYFGAPAIGYFAGNYLSGRYSTRVGVNRMVYWGTLINAVGVALNL 301

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BLAST of mRNA_H-canaliculatus_M_contigs78144.1.1 vs.
Match: multidrug (effflux MFS transporter n=1 Tax=Roseivivax sp. GX 12232 TaxID=2900547 RepID=UPI001E4E3DA9)

HSP 1 Score: 229 bits (583), Expect = 3.710e-71
Identity = 107/160 (66.88%), Postives = 130/160 (81.25%), Query Frame = 1

Query:    1 EESASMIAYVTMGMAVVPMISPAIGGFLDELYGWKANFWAFFFVGGALFALVWRDLGETVKPSGLTLTQQFKEYPELLRSPRFWGYCMASALSSGAFFAYLGGGPFVGSVVFGMSPKWVGVFFGAPAVGYFAGNWITGRNAKRLGVNKLILWGAIAVSCG 480
            + +ASMI YVTMGMAVVPMI PAIGG LDEL+GW+ANFW    +G A+F L WRDLGET +PSGLTL QQF+EYPEL  SPRFWGY MA+ +SSGAFF+YLGG PFVG+ VFG+SP W+G++FGAPAVGYF GN+ +GR + R GVN+++L GA+    G
Sbjct:  134 DRAASMIGYVTMGMAVVPMIGPAIGGVLDELFGWQANFWLLLALGLAIFWLTWRDLGETARPSGLTLIQQFREYPELFASPRFWGYAMAAGMSSGAFFSYLGGAPFVGTEVFGLSPAWLGIYFGAPAVGYFLGNFASGRFSTRFGVNRMVLAGALINGAG 293

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs78144.1.1 vs.
Match: Bcr/CflA (family efflux transporter n=1 Tax=Sulfitobacter sp. SK012 TaxID=1389005 RepID=A0A345QQ89_9RHOB)

HSP 1 Score: 229 bits (583), Expect = 3.810e-71
Identity = 108/165 (65.45%), Postives = 129/165 (78.18%), Query Frame = 1

Query:    1 EESASMIAYVTMGMAVVPMISPAIGGFLDELYGWKANFWAFFFVGGALFALVWRDLGETVKPSGLTLTQQFKEYPELLRSPRFWGYCMASALSSGAFFAYLGGGPFVGSVVFGMSPKWVGVFFGAPAVGYFAGNWITGRNAKRLGVNKLILWGAIAVSCGTALML 495
            + +ASMI YVTMGMAVVPM+SPA+GG LD+ +GWKANFWA F +G A+ AL W DLGET + S  +L  QFKEYPEL RSPRFWGY +A+   SGAFFAYLGG PFVG+ VFGMSP  +GV+FGAPAVGYF GN+ITGR A + G+NKL+ WG  A + G A+ L
Sbjct:  139 DRAASMIGYVTMGMAVVPMVSPALGGILDQFFGWKANFWALFIMGAAVMALTWADLGETARTSDKSLVAQFKEYPELFRSPRFWGYALAAGFCSGAFFAYLGGAPFVGTEVFGMSPAKLGVYFGAPAVGYFVGNFITGRYATKFGINKLVFWGCAANAVGGAISL 303

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs78144.1.1 vs.
Match: Bcr/CflA (family efflux transporter n=1 Tax=Roseovarius bejariae TaxID=2576383 RepID=A0A844CHZ4_9RHOB)

HSP 1 Score: 228 bits (582), Expect = 4.970e-71
Identity = 108/164 (65.85%), Postives = 133/164 (81.10%), Query Frame = 1

Query:    4 ESASMIAYVTMGMAVVPMISPAIGGFLDELYGWKANFWAFFFVGGALFALVWRDLGETVKPSGLTLTQQFKEYPELLRSPRFWGYCMASALSSGAFFAYLGGGPFVGSVVFGMSPKWVGVFFGAPAVGYFAGNWITGRNAKRLGVNKLILWGAIAVSCGTALML 495
            ++ASMI YVTMGMAVVPMI PAIGG LD+ +GWKANFWA F +G A+F L WRDLGET   SG +L+QQF+ YPELL SPRFWGY +A+AL+SGAFFAYLGG PFVG  VFG+ P  +G++FGAPA+GYFAGN+I+GR + R GVN+++LWG +A + G  L L
Sbjct:  136 QAASMIGYVTMGMAVVPMIGPAIGGVLDQAFGWKANFWALFILGAAVFWLTWRDLGETAPKSGHSLSQQFRNYPELLTSPRFWGYSLAAALASGAFFAYLGGAPFVGDRVFGLDPATLGIYFGAPAIGYFAGNFISGRFSVRAGVNRMVLWGTLANASGIGLNL 299

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_M_contigs78144.1.1 vs.

BLAST of mRNA_H-canaliculatus_M_contigs78144.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Bcr/CflA	2.020e-94	83.64	family efflux transporter n=1 Tax=Sulfitobacter sp...	[more]
Bcr/CflA	5.280e-84	76.97	family efflux transporter n=1 Tax=Ascidiaceihabita...	[more]
Bcr/CflA	1.410e-74	70.55	family efflux transporter n=2 Tax=Primorskyibacter...	[more]
Bcr/CflA	3.340e-74	67.27	family efflux transporter n=2 Tax=Rhodobacterales ...	[more]
Bcr/CflA	1.230e-72	67.27	family efflux transporter n=1 Tax=Roseobacter pont...	[more]
Bcr/CflA	9.290e-72	64.85	family efflux transporter n=1 Tax=Sulfitobacter sp...	[more]
Bcr/CflA	1.010e-71	65.45	family efflux transporter n=2 Tax=Puniceibacterium...	[more]
multidrug	3.710e-71	66.88	effflux MFS transporter n=1 Tax=Roseivivax sp. GX ...	[more]
Bcr/CflA	3.810e-71	65.45	family efflux transporter n=1 Tax=Sulfitobacter sp...	[more]
Bcr/CflA	4.970e-71	65.85	family efflux transporter n=1 Tax=Roseovarius beja...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_M_contigs78144	contig	H-canaliculatus_M_contigs78144:3..503 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90	2022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Seed ortholog	1305735.JAFT01000005_gene2652
Preferred name	MA20_01870
PFAMs	MFS_1,Sugar_tr
Model size	501
Max annot lvl	28211\|Alphaproteobacteria
KEGG ko	ko:K07552
KEGG TC	2.A.1.2
Hectar predicted targeting category	signal peptide
Exons	1
Evalue	2.64e-68
EggNOG OGs	COG0477@1\|root,COG2814@2\|Bacteria,1MW19@1224\|Proteobacteria,2TRQD@28211\|Alphaproteobacteria,2PCK8@252301\|Oceanicola
Description	Major Facilitator Superfamily
Cds size	486
COG category	EGP
BRITE	ko00000,ko02000

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854117.8357995-CDS-H-canaliculatus_M_contigs78144:2..488	1696854117.8357995-CDS-H-canaliculatus_M_contigs78144:2..488	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs78144 3..488 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854117.8479187-UTR-H-canaliculatus_M_contigs78144:488..503	1696854117.8479187-UTR-H-canaliculatus_M_contigs78144:488..503	Hapterophycus canaliculatus Oshoro7m male	UTR	H-canaliculatus_M_contigs78144 489..503 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_M_contigs78144.1.1	prot_H-canaliculatus_M_contigs78144.1.1	Hapterophycus canaliculatus Oshoro7m male	polypeptide	H-canaliculatus_M_contigs78144 3..488 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-canaliculatus_M_contigs78144:3..503-
coding sequence from alignment at H-canaliculatus_M_contigs78144:3..503-

protein sequence of mRNA_H-canaliculatus_M_contigs78144.1.1

>prot_H-canaliculatus_M_contigs78144.1.1 ID=prot_H-canaliculatus_M_contigs78144.1.1|Name=mRNA_H-canaliculatus_M_contigs78144.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=162bp
MIAYVTMGMAVVPMISPAIGGFLDELYGWKANFWAFFFVGGALFALVWRD
LGETVKPSGLTLTQQFKEYPELLRSPRFWGYCMASALSSGAFFAYLGGGP
FVGSVVFGMSPKWVGVFFGAPAVGYFAGNWITGRNAKRLGVNKLILWGAI
AVSCGTALMLGL

mRNA from alignment at H-canaliculatus_M_contigs78144:3..503-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-canaliculatus_M_contigs78144.1.1 ID=mRNA_H-canaliculatus_M_contigs78144.1.1|Name=mRNA_H-canaliculatus_M_contigs78144.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=501bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78144:3..503- (Hapterophycus canaliculatus Oshoro7m male)
GAAGAATCGGCCTCAATGATCGCTTATGTCACGATGGGCATGGCCGTGGT
GCCAATGATCAGCCCGGCGATCGGTGGTTTTTTGGACGAATTATACGGAT
GGAAAGCCAACTTTTGGGCATTTTTCTTTGTCGGCGGTGCGTTGTTCGCA
CTGGTTTGGCGCGATTTGGGCGAGACGGTCAAACCGTCAGGCCTGACGTT
AACCCAGCAGTTCAAAGAATACCCCGAGCTGCTGCGCTCACCCCGATTTT
GGGGATACTGCATGGCATCGGCCCTAAGTTCGGGCGCGTTTTTTGCCTAT
CTTGGCGGCGGCCCTTTTGTTGGATCCGTGGTGTTTGGCATGTCCCCAAA
ATGGGTCGGGGTTTTCTTTGGCGCACCGGCTGTTGGTTATTTCGCGGGCA
ACTGGATCACCGGGCGCAACGCAAAGCGTTTGGGCGTCAACAAGCTGATT
TTGTGGGGCGCAATCGCGGTCAGCTGTGGCACGGCGTTGATGCTGGGCTT
G

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs78144:3..503-

>mRNA_H-canaliculatus_M_contigs78144.1.1 ID=mRNA_H-canaliculatus_M_contigs78144.1.1|Name=mRNA_H-canaliculatus_M_contigs78144.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=486bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78144:3..503- (Hapterophycus canaliculatus Oshoro7m male)
ATGATCGCTTATGTCACGATGGGCATGGCCGTGGTGCCAATGATCAGCCC
GGCGATCGGTGGTTTTTTGGACGAATTATACGGATGGAAAGCCAACTTTT
GGGCATTTTTCTTTGTCGGCGGTGCGTTGTTCGCACTGGTTTGGCGCGAT
TTGGGCGAGACGGTCAAACCGTCAGGCCTGACGTTAACCCAGCAGTTCAA
AGAATACCCCGAGCTGCTGCGCTCACCCCGATTTTGGGGATACTGCATGG
CATCGGCCCTAAGTTCGGGCGCGTTTTTTGCCTATCTTGGCGGCGGCCCT
TTTGTTGGATCCGTGGTGTTTGGCATGTCCCCAAAATGGGTCGGGGTTTT
CTTTGGCGCACCGGCTGTTGGTTATTTCGCGGGCAACTGGATCACCGGGC
GCAACGCAAAGCGTTTGGGCGTCAACAAGCTGATTTTGTGGGGCGCAATC
GCGGTCAGCTGTGGCACGGCGTTGATGCTGGGCTTG