mRNA_H-canaliculatus_M_contigs78123.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs78123.1.1
Unique NamemRNA_H-canaliculatus_M_contigs78123.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs78123.1.1 vs.
Match: Vps39_2 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L255_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.870e-16
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    4 LLFVQFYVFPCGHAFHSECLVENIRPHLSVDQQIAVASLVQMIAA 138
            +L  QFYVFPCGHAFHSECL+ENIRPHLSV+Q+ AV SLV+MIAA
Sbjct:   38 ILSTQFYVFPCGHAFHSECLLENIRPHLSVEQRSAVESLVKMIAA 82
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BLAST of mRNA_H-canaliculatus_M_contigs78123.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI29_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 9.760e-14
Identity = 34/44 (77.27%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    4 LLFVQFYVFPCGHAFHSECLVENIRPHLSVDQQIAVASLVQMIA 135
            +L  QFYVFPCGHAFH ECL+ENIRPHLSV+Q+ AV SLV MIA
Sbjct:  745 ILSTQFYVFPCGHAFHFECLLENIRPHLSVEQRSAVESLVAMIA 788
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BLAST of mRNA_H-canaliculatus_M_contigs78123.1.1 vs.
Match: LOW (QUALITY PROTEIN: vacuolar protein sorting-associated protein 18 homolog n=1 Tax=Pogonomyrmex barbatus TaxID=144034 RepID=A0A8N1S572_9HYME)

HSP 1 Score: 55.1 bits (131), Expect = 3.200e-7
Identity = 25/45 (55.56%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:    4 LLFVQFYVFPCGHAFHSECLVENIRPHLSVDQQIAVASLVQMIAA 138
            LL   FYVFPCGH FHS+CLV  + P LS+DQ+  +A L Q + A
Sbjct:  802 LLLRSFYVFPCGHKFHSDCLVAALTPMLSMDQRTKLADLQQQLTA 846
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BLAST of mRNA_H-canaliculatus_M_contigs78123.1.1 vs.
Match: vacuolar (protein sorting-associated protein 18 homolog n=1 Tax=Belonocnema kinseyi TaxID=2817044 RepID=UPI00143CC3AD)

HSP 1 Score: 52.0 bits (123), Expect = 7.970e-7
Identity = 23/39 (58.97%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:    4 LLFVQFYVFPCGHAFHSECLVENIRPHLSVDQQIAVASL 120
            LL   FYVFPCGH FHS+CLV  + P LS++QQ  +A L
Sbjct:   20 LLLRPFYVFPCGHRFHSDCLVAALTPMLSLEQQTKLADL 58
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BLAST of mRNA_H-canaliculatus_M_contigs78123.1.1 vs.
Match: vacuolar (protein sorting-associated protein 18 homolog isoform X1 n=2 Tax=Cephus cinctus TaxID=211228 RepID=UPI0007718F0F)

HSP 1 Score: 53.9 bits (128), Expect = 8.200e-7
Identity = 24/43 (55.81%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    4 LLFVQFYVFPCGHAFHSECLVENIRPHLSVDQQIAVASLVQMI 132
            LL   FYVFPCGH FHS+CLV  + P LS+DQQ  +A L + +
Sbjct:  893 LLLRPFYVFPCGHRFHSDCLVAALTPMLSMDQQTKLADLQRQL 935
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BLAST of mRNA_H-canaliculatus_M_contigs78123.1.1 vs.
Match: Vacuolar (protein sorting-associated protein 18 homolog n=6 Tax=Formicidae TaxID=36668 RepID=E2BRY6_HARSA)

HSP 1 Score: 53.9 bits (128), Expect = 8.200e-7
Identity = 24/45 (53.33%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:    4 LLFVQFYVFPCGHAFHSECLVENIRPHLSVDQQIAVASLVQMIAA 138
            LL   FYVFPCGH FHS+CLV  + P LS+DQ+  +A L + + A
Sbjct:  904 LLLRPFYVFPCGHKFHSDCLVATLTPMLSMDQRTKLADLQRQLTA 948
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BLAST of mRNA_H-canaliculatus_M_contigs78123.1.1 vs.
Match: Vacuolar (protein sorting-associated protein 18 homolog n=2 Tax=Opiinae TaxID=68883 RepID=A0A0C9RYL8_9HYME)

HSP 1 Score: 53.5 bits (127), Expect = 1.120e-6
Identity = 25/47 (53.19%), Postives = 31/47 (65.96%), Query Frame = 1 
Query:    4 LLFVQFYVFPCGHAFHSECLVENIRPHLSVDQQIAVASLVQMIAAGS 144
            LL   FYVFPCGH FHS+CL+  + P LS DQQ  +A L + + A S
Sbjct:  877 LLLRPFYVFPCGHRFHSDCLIAALTPMLSNDQQTKLADLQRQLTAAS 923
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BLAST of mRNA_H-canaliculatus_M_contigs78123.1.1 vs.
Match: Vacuolar (protein sorting-associated protein 18 homolog n=26 Tax=Formicidae TaxID=36668 RepID=A0A6J1RAU9_9HYME)

HSP 1 Score: 53.1 bits (126), Expect = 1.530e-6
Identity = 24/45 (53.33%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:    4 LLFVQFYVFPCGHAFHSECLVENIRPHLSVDQQIAVASLVQMIAA 138
            LL   FYVFPCGH FHS+CLV  + P LS+DQ+  +A L + + A
Sbjct:  877 LLLRPFYVFPCGHKFHSDCLVAALTPMLSMDQRTKLADLQRQLTA 921
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs78123.1.1 vs.
Match: vacuolar (protein sorting-associated protein 18 homolog isoform X1 n=2 Tax=Nomia melanderi TaxID=2448451 RepID=UPI0013042D2D)

HSP 1 Score: 53.1 bits (126), Expect = 1.530e-6
Identity = 24/45 (53.33%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:    4 LLFVQFYVFPCGHAFHSECLVENIRPHLSVDQQIAVASLVQMIAA 138
            LL   FYVFPCGH FHS+CLV  + P LS+DQ+  +A L + + A
Sbjct:  888 LLLRPFYVFPCGHRFHSDCLVAALTPMLSMDQRTKLADLQRQLTA 932
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs78123.1.1 vs.
Match: vacuolar (protein sorting-associated protein 18 homolog isoform X1 n=2 Tax=Chelonus insularis TaxID=460826 RepID=UPI00158874B4)

HSP 1 Score: 53.1 bits (126), Expect = 1.530e-6
Identity = 22/45 (48.89%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:    4 LLFVQFYVFPCGHAFHSECLVENIRPHLSVDQQIAVASLVQMIAA 138
            LL   FYVFPCGH FHS+CL+  + P LS++QQ+ +  L + + A
Sbjct:  892 LLLRPFYVFPCGHRFHSDCLISILTPMLSIEQQLKLTDLQRQLTA 936
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs78123.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Vps39_21.870e-1680.00domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized9.760e-1477.27protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
LOW3.200e-755.56QUALITY PROTEIN: vacuolar protein sorting-associat... [more]
vacuolar7.970e-758.97protein sorting-associated protein 18 homolog n=1 ... [more]
vacuolar8.200e-755.81protein sorting-associated protein 18 homolog isof... [more]
Vacuolar8.200e-753.33protein sorting-associated protein 18 homolog n=6 ... [more]
Vacuolar1.120e-653.19protein sorting-associated protein 18 homolog n=2 ... [more]
Vacuolar1.530e-653.33protein sorting-associated protein 18 homolog n=26... [more]
vacuolar1.530e-653.33protein sorting-associated protein 18 homolog isof... [more]
vacuolar1.530e-648.89protein sorting-associated protein 18 homolog isof... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs78123contigH-canaliculatus_M_contigs78123:44..235 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LI29
Preferred nameVPS18
PFAMsClathrin,Pep3_Vps18,Vps39_2
Model size192
Max annot lvl2759|Eukaryota
KEGG koko:K20181
KEGG Pathwayko04138,map04138
Hectar predicted targeting categorysignal peptide
GOsGO:0000003,GO:0000149,GO:0000323,GO:0001667,GO:0002064,GO:0002065,GO:0002066,GO:0002791,GO:0002793,GO:0003006,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005768,GO:0005769,GO:0005770,GO:0005773,GO:0005856,GO:0005884,GO:0006605,GO:0006622,GO:0006623,GO:0006725,GO:0006726,GO:0006727,GO:0006728,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006886,GO:0006887,GO:0006897,GO:0006904,GO:0006914,GO:0006928,GO:0006950,GO:0006996,GO:0007032,GO:0007033,GO:0007034,GO:0007040,GO:0007041,GO:0007154,GO:0007220,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007298,GO:0007568,GO:0007610,GO:0007632,GO:0007634,GO:0008055,GO:0008057,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0008333,GO:0008340,GO:0008593,GO:0009056,GO:0009058,GO:0009267,GO:0009314,GO:0009416,GO:0009605,GO:0009628,GO:0009790,GO:0009888,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010256,GO:0010259,GO:0010631,GO:0010646,GO:0010647,GO:0010648,GO:0010876,GO:0012505,GO:0015031,GO:0015629,GO:0015711,GO:0015718,GO:0015721,GO:0015833,GO:0015849,GO:0015850,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016477,GO:0016482,GO:0018130,GO:0019058,GO:0019438,GO:0019538,GO:0019748,GO:0019889,GO:0019905,GO:0019953,GO:0021700,GO:0022406,GO:0022411,GO:0022412,GO:0022414,GO:0023051,GO:0023056,GO:0023057,GO:0030154,GO:0030260,GO:0030674,GO:0030707,GO:0030855,GO:0030897,GO:0030903,GO:0031338,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032456,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032880,GO:0032940,GO:0032984,GO:0032991,GO:0033036,GO:0033043,GO:0033059,GO:0033060,GO:0033263,GO:0033365,GO:0033554,GO:0034613,GO:0034641,GO:0035542,GO:0040011,GO:0042440,GO:0042441,GO:0042558,GO:0042559,GO:0042594,GO:0042886,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043324,GO:0043473,GO:0043474,GO:0043476,GO:0043482,GO:0043485,GO:0043933,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044403,GO:0044409,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0044703,GO:0045022,GO:0045176,GO:0045184,GO:0045202,GO:0045746,GO:0046148,GO:0046152,GO:0046158,GO:0046483,GO:0046718,GO:0046872,GO:0046903,GO:0046907,GO:0046914,GO:0046942,GO:0048066,GO:0048069,GO:0048072,GO:0048278,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048568,GO:0048583,GO:0048585,GO:0048609,GO:0048731,GO:0048753,GO:0048757,GO:0048856,GO:0048869,GO:0048870,GO:0050708,GO:0050714,GO:0050789,GO:0050794,GO:0050896,GO:0050931,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051128,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051301,GO:0051640,GO:0051641,GO:0051649,GO:0051674,GO:0051701,GO:0051704,GO:0051716,GO:0051806,GO:0051828,GO:0060034,GO:0060035,GO:0060036,GO:0060090,GO:0060429,GO:0060627,GO:0061356,GO:0061357,GO:0061462,GO:0061919,GO:0065007,GO:0070201,GO:0070727,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072665,GO:0072666,GO:0080171,GO:0090087,GO:0090130,GO:0090132,GO:0097352,GO:0097708,GO:0098657,GO:0098796,GO:0098927,GO:0099023,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0140029,GO:0140056,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1903530,GO:1903532,GO:1904951
Exons1
Evalue1.6e-14
EggNOG OGsKOG2034@1|root,KOG2034@2759|Eukaryota
Descriptionnotochord cell vacuolation
Cds size192
COG categoryS
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854117.535117-CDS-H-canaliculatus_M_contigs78123:43..2351696854117.535117-CDS-H-canaliculatus_M_contigs78123:43..235Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs78123 44..235 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs78123.1.1prot_H-canaliculatus_M_contigs78123.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs78123 44..235 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs78123.1.1

>prot_H-canaliculatus_M_contigs78123.1.1 ID=prot_H-canaliculatus_M_contigs78123.1.1|Name=mRNA_H-canaliculatus_M_contigs78123.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=64bp
PLLFVQFYVFPCGHAFHSECLVENIRPHLSVDQQIAVASLVQMIAAGSSG
GLDGKGSPGAAGGR
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mRNA from alignment at H-canaliculatus_M_contigs78123:44..235+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs78123.1.1 ID=mRNA_H-canaliculatus_M_contigs78123.1.1|Name=mRNA_H-canaliculatus_M_contigs78123.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=192bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78123:44..235+ (Hapterophycus canaliculatus Oshoro7m male)
CCTCTCTTATTCGTCCAGTTCTACGTGTTTCCGTGCGGCCACGCCTTCCA
CTCCGAGTGCCTGGTGGAAAACATCCGCCCACACCTCTCCGTCGACCAGC
AGATTGCGGTGGCGTCTCTGGTTCAGATGATCGCCGCCGGAAGTAGCGGC
GGCTTAGACGGGAAGGGTTCTCCCGGGGCGGCTGGCGGGAGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs78123:44..235+

>mRNA_H-canaliculatus_M_contigs78123.1.1 ID=mRNA_H-canaliculatus_M_contigs78123.1.1|Name=mRNA_H-canaliculatus_M_contigs78123.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=192bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78123:44..235+ (Hapterophycus canaliculatus Oshoro7m male)
CCTCTCTTATTCGTCCAGTTCTACGTGTTTCCGTGCGGCCACGCCTTCCA
CTCCGAGTGCCTGGTGGAAAACATCCGCCCACACCTCTCCGTCGACCAGC
AGATTGCGGTGGCGTCTCTGGTTCAGATGATCGCCGCCGGAAGTAGCGGC
GGCTTAGACGGGAAGGGTTCTCCCGGGGCGGCTGGCGGGAGA
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