mRNA_H-canaliculatus_M_contigs78113.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs78113.1.1
Unique NamemRNA_H-canaliculatus_M_contigs78113.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs78113.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWC3_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 9.770e-10
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:    1 VVAMDSDGRCTVVACRDGSLRLLGSLDNGDFVE 99
            VVAMDSDGRCTVVACRDGSLRLLGSL++G F +
Sbjct: 1189 VVAMDSDGRCTVVACRDGSLRLLGSLEDGGFTQ 1221
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BLAST of mRNA_H-canaliculatus_M_contigs78113.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC57_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 9.770e-10
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:    1 VVAMDSDGRCTVVACRDGSLRLLGSLDNGDFVE 99
            VVAMDSDGRCTVVACRDGSLRLLGSL++G F +
Sbjct: 1194 VVAMDSDGRCTVVACRDGSLRLLGSLEDGGFTQ 1226
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs78113.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized9.770e-1084.85protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized9.770e-1084.85protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs78113contigH-canaliculatus_M_contigs78113:3..161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FWC3
PFAMsBeach,Laminin_G_3,PH_BEACH,WD40
Model size159
Max annot lvl2759|Eukaryota
KEGG koko:K18953,ko:K22262
KEGG Pathwayko04071,map04071
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue4.38e-09
EggNOG OGsKOG1786@1|root,KOG1786@2759|Eukaryota
Descriptionaggrephagy
Cds size150
COG categoryT
BRITEko00000,ko00001,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854117.4824643-UTR-H-canaliculatus_M_contigs78113:2..111696854117.4824643-UTR-H-canaliculatus_M_contigs78113:2..11Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs78113 3..11 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854117.5018508-CDS-H-canaliculatus_M_contigs78113:11..1611696854117.5018508-CDS-H-canaliculatus_M_contigs78113:11..161Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs78113 12..161 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs78113.1.1prot_H-canaliculatus_M_contigs78113.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs78113 12..161 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs78113.1.1

>prot_H-canaliculatus_M_contigs78113.1.1 ID=prot_H-canaliculatus_M_contigs78113.1.1|Name=mRNA_H-canaliculatus_M_contigs78113.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=50bp
MDSDGRCTVVACRDGSLRLLGSLDNGDFVEVGSLLIAAKVATRSCLGLS*
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mRNA from alignment at H-canaliculatus_M_contigs78113:3..161+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs78113.1.1 ID=mRNA_H-canaliculatus_M_contigs78113.1.1|Name=mRNA_H-canaliculatus_M_contigs78113.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=159bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78113:3..161+ (Hapterophycus canaliculatus Oshoro7m male)
GTTGTGGCGATGGACAGCGACGGACGATGCACGGTCGTGGCGTGCAGGGA
CGGTTCTTTGCGTCTGCTTGGCTCCCTCGACAACGGAGACTTCGTTGAGG
TAGGGTCGCTTCTCATAGCGGCGAAGGTGGCTACGAGAAGCTGCCTCGGT
CTTTCGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs78113:3..161+

>mRNA_H-canaliculatus_M_contigs78113.1.1 ID=mRNA_H-canaliculatus_M_contigs78113.1.1|Name=mRNA_H-canaliculatus_M_contigs78113.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=150bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78113:3..161+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGACAGCGACGGACGATGCACGGTCGTGGCGTGCAGGGACGGTTCTTT
GCGTCTGCTTGGCTCCCTCGACAACGGAGACTTCGTTGAGGTAGGGTCGC
TTCTCATAGCGGCGAAGGTGGCTACGAGAAGCTGCCTCGGTCTTTCGTGA
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