mRNA_H-canaliculatus_M_contigs7810.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7810.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7810.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7810.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEG7_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 4.890e-34
Identity = 138/272 (50.74%), Postives = 159/272 (58.46%), Query Frame = 1 
Query:  415 AATAVALDTREAIRARDERERDLAIRQRKSRGMSVDLGSGTDTRDWSHPQXXXXXXXXXXXXXXXXXXXXXXXXXXTKREGXXXKEPQYRRSREAAAKARRSARRKESSERPPRTGGALYRLSDPAAATAIASGRGSGLSEEHVNTFLNADIPEGAPDPWQARWNAMSEELERXXXXXXXXXXXKFSRPSRAPGGGAVXXXXXXXXPSLSAKKKDQRTTNSAFTANTNATNHTHASAPR-IKDRNT-PPFPTNPGASGGKDRLSKGASGGAG 1224
            AA A AL++REAIRARDERERDLA+RQRKS  M +DL + +  RD +  +                          T+RE       + R   EA  +ARR ARRKESSERPPRT GALYR   P     +A G GSG+SE  V  ++NADIPEGAPDP QARWNAM+EE +RXXXXXXXXXXX              XXXXXXXX      KKD R             +HTH SAPR  +DR+    FPTNPGASGGKDR S GA+GG G
Sbjct: 1356 AAAAAALESREAIRARDERERDLAVRQRKS--MKMDLNAASAPRDAAGVKQHQQRPKRDGHDKKDAEKARRAERDRTRREKRHDDTERQRNRSEAGGRARREARRKESSERPPRTSGALYRYGSPD----LAPGGGSGVSEYVV--YVNADIPEGAPDPLQARWNAMTEESDRXXXXXXXXXXXX------------XXXXXXXXXXXXXYSKKDPR-----------EKHHTHESAPRNTRDRDVRASFPTNPGASGGKDRHSNGAAGGGG 1596
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BLAST of mRNA_H-canaliculatus_M_contigs7810.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL01_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 1.860e-31
Identity = 131/262 (50.00%), Postives = 151/262 (57.63%), Query Frame = 1 
Query:  430 ALDTREAIRARDERERDLAIRQRKSRGMSVDLGSGTDTRDWSHPQXXXXXXXXXXXXXXXXXXXXXXXXXXTKREGXXXKEPQYRRSREAAAKARRSARRKESSERPPRTGGALYRLSDPAAATAIASGRGSGLSEEHVNTFLNADIPEGAPDPWQARWNAMSEELERXXXXXXXXXXXKFSRPSRAPGGGAVXXXXXXXXPSLSAKKKDQRTTNSAFTANTNATNHTHASAPR-IKDRNT-PPFPTNPGASGGKDRLSKGA 1209
            AL++REAIRARDERERDLA+RQRKS  M +DL + +  RD +  +                           +RE       + R   EA  +ARR ARRKESSERPPRT GALYR   P     +A G GSG+SE  V  ++NADIPEGAPDP QARWNAM+EE +RXXXXXXXXXXX              XXXXXXXX      KKD R             +HTH SAPR  +DR+    FPTNPGASGGKDR S GA
Sbjct: 1355 ALESREAIRARDERERDLAVRQRKS--MKIDLNAASAPRDAAGVKQHQQRPKRDDHDKKDAEKARRAERDRVRREKRHDDTERQRNRSEAGVRARREARRKESSERPPRTSGALYRYGSPD----VAPGGGSGVSEHVV--YVNADIPEGAPDPLQARWNAMAEESDRXXXXXXXXXXXX------------XXXXXXXXXXXXXYSKKDPR-----------EKHHTHESAPRNTRDRDVIASFPTNPGASGGKDRHSNGA 1585
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7810.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized4.890e-3450.74protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.860e-3150.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7810contigH-canaliculatus_M_contigs7810:62..4760 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1976
Hectar predicted targeting categoryother localisation
Exons7
Cds size759
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7810.1.1prot_H-canaliculatus_M_contigs7810.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7810 572..2953 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854117.2984073-UTR-H-canaliculatus_M_contigs7810:61..5711696854117.2984073-UTR-H-canaliculatus_M_contigs7810:61..571Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs7810 62..571 +
1696854117.3853168-UTR-H-canaliculatus_M_contigs7810:2953..32731696854117.3853168-UTR-H-canaliculatus_M_contigs7810:2953..3273Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs7810 2954..3273 +
1696854117.3961148-UTR-H-canaliculatus_M_contigs7810:3528..36931696854117.3961148-UTR-H-canaliculatus_M_contigs7810:3528..3693Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs7810 3529..3693 +
1696854117.406934-UTR-H-canaliculatus_M_contigs7810:4538..47601696854117.406934-UTR-H-canaliculatus_M_contigs7810:4538..4760Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs7810 4539..4760 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854117.3151224-CDS-H-canaliculatus_M_contigs7810:571..7331696854117.3151224-CDS-H-canaliculatus_M_contigs7810:571..733Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7810 572..733 +
1696854117.3336627-CDS-H-canaliculatus_M_contigs7810:1511..15591696854117.3336627-CDS-H-canaliculatus_M_contigs7810:1511..1559Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7810 1512..1559 +
1696854117.347126-CDS-H-canaliculatus_M_contigs7810:2101..22781696854117.347126-CDS-H-canaliculatus_M_contigs7810:2101..2278Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7810 2102..2278 +
1696854117.361017-CDS-H-canaliculatus_M_contigs7810:2517..28481696854117.361017-CDS-H-canaliculatus_M_contigs7810:2517..2848Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7810 2518..2848 +
1696854117.3728514-CDS-H-canaliculatus_M_contigs7810:2912..29531696854117.3728514-CDS-H-canaliculatus_M_contigs7810:2912..2953Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7810 2913..2953 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7810.1.1

>prot_H-canaliculatus_M_contigs7810.1.1 ID=prot_H-canaliculatus_M_contigs7810.1.1|Name=mRNA_H-canaliculatus_M_contigs7810.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=253bp
MSVDLGSGTDTRDWSHPQQQQQQQQEQQQQQQQQQQQQQQQQQRTKREGQ
DQKEPQYRRSREAAAKARRSARRKESSERPPRTGGALYRLSDPAAATAIA
SGRGSGLSEEHVNTFLNADIPEGAPDPWQARWNAMSEELERDHDRDRDRD
RDKFSRPSRAPGGGAVAATASSTTPSLSAKKKDQRTTNSAFTANTNATNH
THASAPRIKDRNTPPFPTNPGASGGKDRLSKGASGGAGGDPARRRRSNRR
GS*
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mRNA from alignment at H-canaliculatus_M_contigs7810:62..4760+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7810.1.1 ID=mRNA_H-canaliculatus_M_contigs7810.1.1|Name=mRNA_H-canaliculatus_M_contigs7810.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=4699bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7810:62..4760+ (Hapterophycus canaliculatus Oshoro7m male)
CAGCAGCAGCAGCATGCAGCCTCTAGCCGCCGGAGAGTTTCCCCGCTCGA
CGACTCTCCGCTCGCCCATAGTGCCTCTGCCTCTGCCTCTGCTTCCGGGC
CGTCATCTTTATCGCTGTCCGCAGCTCCGAGCCCTGCCACCAGCGCGGCT
TCAGGCGGCGGCGGCGGCGGCGGCGGCAGCGGCGGGCTTGGCGTTGCTCA
CCGTTCTCCGGCGTCATCGGCGGTGGTGGCGTCTCCGCCTTCCCCCGCGG
GTCACGGGTCTGCTAGTCTTCCGACTACGGTGGCATCGAAGGTCTCTCCT
TGGGGGAGAAATGGCAATAGTCACGGAGCCCCTACCAACACCACGGCCGC
TCCCGTACAGCCACAACGCCAACAGCTGGACAGCGGCCCCGGCGGCGATT
CCGCCGCCACTGCTGCAGCTACCGCTGTTGCTCTCGACACTCGAGAGGCA
ATCAGGGCGAGGGATGAGCGAGAAAGGGACTTGGCCATCCGGCAGCGGAA
GAGCAGAGGCATGAGCGTGGATTTGGGATCTGGGACAGACACCCGAGATT
GGAGTCATCCCCAACAACAGCAGCAGCAGCAGCAGGAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGCACCAAACG
AGAAGGGCAGGACCAGAAAGAAGTCGAAAAGGTATAGAAGTCGAAAAGGT
ACAGAAGGCGAAAAGGTACAGAAGGCGGATGGTTCGGTGCACTCATCGGC
GATGGCGGTAGTGGTGGTGGCTGCGGTGCTGATGCTAGGGCTTTCGCCGT
CGGCGGTGTTGCTTGATACAGCATTTTTCTCCGCGTCCTGAAACGCTTTC
GATCCTGCCTCAGTACCTGCGCCAACAGCGTGGCTGATTTTGCACCACCC
GCCTTGTGTTCCGTTTCGCAGTCGCGGCTTTGGTTTTGCCATGTTCCTGT
TCGTACCATACCACCGCTCGGTGTCGGGCTTGTAGTTGTTCGGTTGTTGT
TCGCTGCTGAAGCCAGCGTTTTGTGGAGAATGAGCTGAAACGGCTCGTGG
TGTGGGATACATGGCGAGTCTCCCTGAGCTGGTGTTGTCACCTCAACCTC
GTTCGGCACTTTTGCGCCGACGATATCTGCTGGAAAATGATGTGTGCGTA
CTGCTGTGTGATTTCAATGTTGGGAAGTCATTTCGCACGGTGTTGAAACG
TACGAGCAATTTCTTTCCAACCTGGCGTCTTTGCTGCTGTTGCAAACATG
GTAGCTGAAGCATGGCCATCTACGCTTGTATTGATTGGACTGGCAATCAG
GAATATCGCACGTTCCACGATGCTCTTAGTCTTGTGGTTCCACGTCTTCT
GCATGATTGCCTCCCCATGTTCAACCAGGATCAACGCCCGCAGCGCGATA
CGAGGCGGAGGGATAGGCGTAACAATGCTGAAACGAGCGCTGACGTCGAG
CCGCAATACCGTCGCTCGAGGGAGGCTGCGGCGAAGGCCAGGAGGTCTGT
GTGTGCTGTTGCCGATGTGCTCACCATGTTCGCTGTCCTTTTACACTCTC
AACCTTCGCCGAGCACCTCGGTGCCCTTGATTATTTGGCGTGGTACTTGC
GTAAGAATATTTGTCTTTCTACTGCATTCCGGAACTTACCGTACGGTTCT
TGAAATGCGGCTGAAGTTTTGGAATGGGGCAGGGTAGGCCTTGCATGTTG
TGCTGTGCAAGCCTTTTGTTCTGAACTTGCACTTGTGTTTAGGCGAGGGA
GGGATGGGGTCAACCCAATTGCCAAGATTGGCGCTGTTTGAAGTGTCCAG
CCGTGTGGTCTGACCTCCAGCTTTTGCTCGCCTTGGTGTTGGTTTGTGTG
TTCTTTGTGTCATGTAGATCGCCAGCAGAAGCAGATGGGGCGGAAGGCAC
GGGCAGACACAAATGCCCGAGAGATGGTCATCACATGCACATGGTGTATT
TTGGTATTTTTATTCCGGAGACGGGGCTGGAAAAACGGTGCTTGTCGTTC
GCGCTGAAGTCAGCCCCCAACTTGCAATTTTCGCAGAGAGGCGAGACGGA
AGGAAAGCAGCGAGCGTCCTCCGCGCACCGGCGGCGCTCTCTACCGCCTG
TCAGATCCTGCTGCTGCAACAGCTATTGCATCTGGAAGAGGCTCTGGATT
GTCGGAGGAGCATGTGAACACCTTTCTCAACGCCGACATCCCGGAAGGAG
CGCCGGATCCGTGGCAGGTTCGTTCTCGTAGTCCGTCCTCGGTGCAAGCC
GAAAACAGGCGCTGTCGCGCACAATGAACGACGTGTTAGAAGGGGTCTGC
GGGAGGCTATCCCTCGTTCCTGCTTCAGGAAGCAGGAAGTGAAACAATAT
CTCCCCGTAATATCTCCCCGTCTCGGTGTTGGACGGCTGCCTCGTTGTTT
TTCTCACGCCTTTGTCTCGTTGTTTGATGCTCGTTTTGCGCTGCCGGTGG
GTGCAGGCACGGTGGAACGCGATGTCGGAGGAGCTCGAGCGAGACCATGA
CCGCGACCGCGACCGCGACCGCGACAAGTTCTCGAGACCCTCGCGCGCCC
CTGGCGGCGGCGCGGTCGCTGCCACGGCCTCCTCGACGACGCCATCCTTG
TCCGCCAAGAAAAAAGACCAACGAACCACAAACTCAGCCTTCACCGCCAA
CACCAACGCCACTAACCACACACACGCGTCCGCCCCCCGCATCAAGGACA
GAAACACGCCTCCGTTTCCGACCAACCCCGGCGCCTCGGGGGGCAAGGAT
AGACTCAGCAAGGGCGCTTCGGGGGGGGCGGGAGGAGGTCCGAGGGACAG
GGGGGGAGCTAGAAGCACCGCCAGCGGCAGCAGCGCCGGCAGCGCCGGCA
GATCCAGCACGGAGACGAAGGAGCAATCGAAGAGGGAGCTGAGGCGCAAG
CCAAGCCAGCAGCCCCAGCCCCAGCCCCAGCAACCACTGGTAGGTTCGTC
CTTGGACGTGGCAAGAAGACGGGGGGACAAAGACAGTGGCTCTGTCGACG
CCAGAGATGGGGACGCTCGGGATGGCGGCGACCGAGAGAGAGGGAGGGGC
AGGAAGCCGGCCGTAGCCGCAGCAACAGGCGGAGGTGGTGGGGCAGCCGC
CTCCGGCGAGGAGAGCCCCGGCGCTCTCACCCTGGCGAAGGATCAGGAGT
CGGCGAAAGAGCAAGAAGCGAGGGCCAAGGCGGAGAGAGAGAAGCTCAAG
GAGACAAGAAAGGTTTGTTGTCTTTCGCCGAGTCAAAGCCGCGTAGATCG
ACTCCTAGTGGCCGCCAGGGGCGCGCAGATCAACTGTTGTAGCCCCAACC
GATGCCCGCCTCGGTGGTGTGATCGTAGCAACGCCGTCCCTGCAGGAGGT
CGGGGTGACGATCTGCGTCACCCGCGGTGATGTCCACGACGTGAGACGCT
CGTTGAACTTTGTCTATCGCTCATTTTTTCCCTGTGCATGCGCCTGTATC
CACCGGGTTCGCCGTAGGAGCGCAAGAAGATGAAACGCGGAGGTGGAGAG
GATCCAGCGTCCACCGCGATCGATGCTGTCGGTGCTGCCCGTGGTGGAGA
TTCAATCGGCTTTCTCGATAGCGGTAGTATTGACATCGGTATGACGCCCG
GCCGGGTGATCGTGGACAAGGGTGACCAATTGGTGAGGTTCCACAAAAAA
TGCGTGCCAGGTACAGGGAGACATGGAGATAGGTGCCTCTGCTGGTGGCG
ATTCAAATCCTAGTCAGCGATCTTTCGCACATGTCACTGTTCTACTTCAA
CTCGTAGCCGTAATCTCTTGGCCCATTCACCGCGACTTGTACCAGTAGCC
CTTTCTCCACGCCCCAACATAGCAGATTGATGGTGACAAACATCTCCGCA
ATAGGCAAATCAGCCTTTGGGGACGTTTGCCCCCCAAAGGGTGTCGACAT
CTCTTTTCTGTATCAAGGATGAGTAAGCTAGACGATGCATATATCATTTA
CATCCTACCTTATCAGGACGCAGGACGATTTTTTGAGCCCCCGCGTTGAG
GAAGTCCAGACCGTGAGTAAGCAGTCAAAGGAGCGTTCTGCGAATAATCC
TTGTTCAAGAATAGCGCTCAAACGTGCTCGTTAAGATGCGCCCGTGAGCG
TCCTGGTGTTTTGAGAAAGGAATCTCGCCACGGAGGGACGCAGCTATTGG
TGGTGTTCCGGACGAAACCATGATGTGCAGTGGCCGCTCTGTCAATGTAC
ACGATTCGGTTGTACATCGAGAATCAATACTTATTTGATGTCGGCAATTC
GTTGAAGATATACAGCAGATGGCAATAAAAACGAATAGGTGAGAACTTGG
ATAAATGTTGAGTTGCTGACTCTGTCCTACTCGCTCGCTGCTTCGCGTTG
GTGTGCGTATTTCTCTGCGGTGGCCACATCTCATGACTCGATCATGACGG
AGACCACAAGGTTTCTCATAAATTATGGATCCGGTAACCATCCTCTTGCC
TCTCTTCGTCTTGTGTATCTTGTGCAGGGTATCAACATGTCCGAGTTCGA
CACTGCGGAGTTCGAGGTGGTCAAGTCTCGGCGAGAGCTGCAAAAGGAGC
GCAAAGAGCAGAGGGAGCAGGAAGAGAAAGCAGCCGCTCAGAAAGCGTCG
GCCGAAGCAGCCGCCGTGCGAAGGGCCGCCCATCGGGCTGAAAGAGACAA
GATAAGGGCCCAGCTGGAACTCAACAAAGCGGAAGCGCGCAAGGTACGT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7810:62..4760+

>mRNA_H-canaliculatus_M_contigs7810.1.1 ID=mRNA_H-canaliculatus_M_contigs7810.1.1|Name=mRNA_H-canaliculatus_M_contigs7810.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=759bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7810:62..4760+ (Hapterophycus canaliculatus Oshoro7m male)
ATGAGCGTGGATTTGGGATCTGGGACAGACACCCGAGATTGGAGTCATCC
CCAACAACAGCAGCAGCAGCAGCAGGAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGCACCAAACGAGAAGGGCAG
GACCAGAAAGAACCGCAATACCGTCGCTCGAGGGAGGCTGCGGCGAAGGC
CAGGAGGTCTGCGAGACGGAAGGAAAGCAGCGAGCGTCCTCCGCGCACCG
GCGGCGCTCTCTACCGCCTGTCAGATCCTGCTGCTGCAACAGCTATTGCA
TCTGGAAGAGGCTCTGGATTGTCGGAGGAGCATGTGAACACCTTTCTCAA
CGCCGACATCCCGGAAGGAGCGCCGGATCCGTGGCAGGCACGGTGGAACG
CGATGTCGGAGGAGCTCGAGCGAGACCATGACCGCGACCGCGACCGCGAC
CGCGACAAGTTCTCGAGACCCTCGCGCGCCCCTGGCGGCGGCGCGGTCGC
TGCCACGGCCTCCTCGACGACGCCATCCTTGTCCGCCAAGAAAAAAGACC
AACGAACCACAAACTCAGCCTTCACCGCCAACACCAACGCCACTAACCAC
ACACACGCGTCCGCCCCCCGCATCAAGGACAGAAACACGCCTCCGTTTCC
GACCAACCCCGGCGCCTCGGGGGGCAAGGATAGACTCAGCAAGGGCGCTT
CGGGGGGGGCGGGAGGAGATCCAGCACGGAGACGAAGGAGCAATCGAAGA
GGGAGCTGA
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