mRNA_H-canaliculatus_M_contigs78076.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs78076.1.1
Unique NamemRNA_H-canaliculatus_M_contigs78076.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs78076.1.1 vs.
Match: Cu(I)-responsive (transcriptional regulator n=1 Tax=Oricola thermophila TaxID=2742145 RepID=A0A6N1V994_9HYPH)

HSP 1 Score: 173 bits (439), Expect = 1.180e-53
Identity = 79/122 (64.75%), Postives = 104/122 (85.25%), Query Frame = 1 
Query:    1 AAKQCSLPVKTIRYYDEIGLVSPRRAASGYREYSSADVHRLQFVARARGLGFSLDDCRHLLSLYEDRSRASADVKLIVQEKLTEIDQKISELQELRQTLSQLSEHCRGDNRPDCPILADLAG 366
            A++   LP KTIRYY+EIGLV+P R+A+GYR+YS +DVHRL+F+ R+R LGF++D+CRHLLSLY+D++RASADVK +  EK+ EID+KI+ELQ LR TL+ L+ HC GD+RPDCPI+ DLAG
Sbjct:    6 ASEMAGLPAKTIRYYEEIGLVTPTRSANGYRDYSESDVHRLRFLQRSRSLGFTIDECRHLLSLYDDKNRASADVKAMALEKVAEIDRKIAELQSLRDTLANLARHCHGDDRPDCPIIDDLAG 127
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs78076.1.1 vs.
Match: Cu(I)-responsive (transcriptional regulator n=3 Tax=Hyphomicrobiales TaxID=356 RepID=A0A2E2RS53_9HYPH)

HSP 1 Score: 172 bits (436), Expect = 3.730e-53
Identity = 83/127 (65.35%), Postives = 103/127 (81.10%), Query Frame = 1 
Query:    1 AAKQCSLPVKTIRYYDEIGLVSPRRAASGYREYSSADVHRLQFVARARGLGFSLDDCRHLLSLYEDRSRASADVKLIVQEKLTEIDQKISELQELRQTLSQLSEHCRGDNRPDCPILADLAGNNNSA 381
            AA+Q +LP KTIRYY+EIGLV+P RA +GYR+YS  DVHRL+F+ R+R LGF++D+CRHLLSLY+D+ RASADVK +  EK+ EID+KI+ELQ LR TL+ L  HC GD RPDCPI+ DLAG   SA
Sbjct:    6 AAEQANLPPKTIRYYEEIGLVTPSRADNGYRDYSDKDVHRLRFLQRSRSLGFTIDECRHLLSLYDDKHRASADVKAMALEKVGEIDRKIAELQSLRDTLATLPRHCHGDGRPDCPIIDDLAGERASA 132
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs78076.1.1 vs.
Match: Cu(I)-responsive (transcriptional regulator n=1 Tax=Ahrensia sp. TaxID=1872419 RepID=A0A2E0IPP2_9HYPH)

HSP 1 Score: 171 bits (432), Expect = 1.520e-52
Identity = 80/122 (65.57%), Postives = 102/122 (83.61%), Query Frame = 1 
Query:    1 AAKQCSLPVKTIRYYDEIGLVSPRRAASGYREYSSADVHRLQFVARARGLGFSLDDCRHLLSLYEDRSRASADVKLIVQEKLTEIDQKISELQELRQTLSQLSEHCRGDNRPDCPILADLAG 366
            A++Q +LP KTIRYY+EIGLV+P RA +GYR+YS  DVHRL+F+ R+R LGF++D+CRHLLSLY+D+ RASADVK +  EK+ EID+KI+ELQ LR TL+ L+ HC GD RPDCPI+ DLAG
Sbjct:    6 ASEQANLPPKTIRYYEEIGLVTPSRAENGYRDYSDKDVHRLRFLQRSRSLGFTIDECRHLLSLYDDQHRASADVKAMALEKVGEIDRKIAELQSLRDTLATLARHCHGDGRPDCPIIDDLAG 127
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs78076.1.1 vs.
Match: Cu(I)-responsive (transcriptional regulator n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A2N6B1W2_9HYPH)

HSP 1 Score: 171 bits (432), Expect = 1.670e-52
Identity = 80/122 (65.57%), Postives = 101/122 (82.79%), Query Frame = 1 
Query:    1 AAKQCSLPVKTIRYYDEIGLVSPRRAASGYREYSSADVHRLQFVARARGLGFSLDDCRHLLSLYEDRSRASADVKLIVQEKLTEIDQKISELQELRQTLSQLSEHCRGDNRPDCPILADLAG 366
            AA+ C LP KTIRYY+EI LVSP R  +GYR+YS AD+HRL+F+ RARGLGFS+DDCR LLSLY+D++RASADVK + + ++ EID K++ELQ LR TL++L+E C GD+RPDCPIL  LAG
Sbjct:    6 AAQACGLPAKTIRYYEEIKLVSPARRNNGYRDYSDADIHRLRFLQRARGLGFSIDDCRQLLSLYDDKNRASADVKALARTRIAEIDAKVAELQSLRATLNELAEACHGDDRPDCPILEGLAG 127
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs78076.1.1 vs.
Match: Cu(I)-responsive (transcriptional regulator n=2 Tax=Hoeflea TaxID=274591 RepID=A0A286IAS1_9HYPH)

HSP 1 Score: 169 bits (428), Expect = 5.970e-52
Identity = 78/122 (63.93%), Postives = 102/122 (83.61%), Query Frame = 1 
Query:    1 AAKQCSLPVKTIRYYDEIGLVSPRRAASGYREYSSADVHRLQFVARARGLGFSLDDCRHLLSLYEDRSRASADVKLIVQEKLTEIDQKISELQELRQTLSQLSEHCRGDNRPDCPILADLAG 366
            AA   SLPVKTIRYY++IGL+ P RAA+GYR+YSS+DVHRL F+ R+R LGFS+D+CR LLSLYED++RAS+DVK +  EK+ EID+K+ EL+ LR TL  L++HC GD+RPDCPI+ ++AG
Sbjct:    6 AADATSLPVKTIRYYEDIGLIKPVRAANGYRDYSSSDVHRLAFIQRSRSLGFSIDECRSLLSLYEDKARASSDVKALALEKIVEIDRKLKELKSLRNTLRTLADHCHGDDRPDCPIIDEIAG 127
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs78076.1.1 vs.
Match: Cu(I)-responsive (transcriptional regulator n=1 Tax=Rhodobium orientis TaxID=34017 RepID=A0A327JPG3_9HYPH)

HSP 1 Score: 169 bits (427), Expect = 9.330e-52
Identity = 79/122 (64.75%), Postives = 103/122 (84.43%), Query Frame = 1 
Query:    1 AAKQCSLPVKTIRYYDEIGLVSPRRAASGYREYSSADVHRLQFVARARGLGFSLDDCRHLLSLYEDRSRASADVKLIVQEKLTEIDQKISELQELRQTLSQLSEHCRGDNRPDCPILADLAG 366
            AA++ +LP KTIRYY+EIGLV+P R  +GYR+Y ++DVH+LQF+ RARGLGFS+DDCRHLLSLYED+ RASADVK + + ++ +ID +++ELQ LR TL++L E C GD+RPDCPIL DLAG
Sbjct:    6 AARRSALPAKTIRYYEEIGLVAPGRRDNGYRDYDASDVHKLQFLKRARGLGFSIDDCRHLLSLYEDKHRASADVKALARARIEDIDARMAELQSLRTTLAKLVECCHGDDRPDCPILDDLAG 127
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs78076.1.1 vs.
Match: Cu(I)-responsive (transcriptional regulator n=1 Tax=Lentilitoribacter sp. Alg239-R112 TaxID=2305987 RepID=UPI0013A6C735)

HSP 1 Score: 167 bits (423), Expect = 3.790e-51
Identity = 78/127 (61.42%), Postives = 104/127 (81.89%), Query Frame = 1 
Query:    1 AAKQCSLPVKTIRYYDEIGLVSPRRAASGYREYSSADVHRLQFVARARGLGFSLDDCRHLLSLYEDRSRASADVKLIVQEKLTEIDQKISELQELRQTLSQLSEHCRGDNRPDCPILADLAGNNNSA 381
            A++Q  LP KTIRYY++I L+ P RA +GYR+YS  D+HRL+F+ R+R LGF++D+CR LLSLY+D  RAS+DVKLI   K+ EIDQKISELQ L++TL+ L+++C GDNRP+CPI+ADLAG N S+
Sbjct:    6 ASEQSGLPPKTIRYYEDINLIKPARAGNGYRDYSDTDIHRLKFLQRSRSLGFTIDECRLLLSLYDDDQRASSDVKLIAVSKIEEIDQKISELQSLKETLASLAKNCHGDNRPECPIIADLAGQNVSS 132
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs78076.1.1 vs.
Match: Cu(I)-responsive (transcriptional regulator n=1 Tax=Roseibium denhamense TaxID=76305 RepID=UPI0012BC79F4)

HSP 1 Score: 166 bits (420), Expect = 9.560e-51
Identity = 78/122 (63.93%), Postives = 101/122 (82.79%), Query Frame = 1 
Query:    1 AAKQCSLPVKTIRYYDEIGLVSPRRAASGYREYSSADVHRLQFVARARGLGFSLDDCRHLLSLYEDRSRASADVKLIVQEKLTEIDQKISELQELRQTLSQLSEHCRGDNRPDCPILADLAG 366
            A+K C LP KTIRYY+EIGLV P R A+GYR+YS  DVH+L+F+ RAR LGFS+++CR LLSLY+D  RASADVK + + KL+E+D+KI+ELQ L+ TLS+L+E C+G+ RPDCPI+ DLAG
Sbjct:    6 ASKNCGLPSKTIRYYEEIGLVQPLRGANGYRDYSETDVHQLKFLQRARRLGFSIEECRDLLSLYQDTGRASADVKALTEAKLSEVDKKIAELQALKTTLSRLAEACQGNERPDCPIIDDLAG 127
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs78076.1.1 vs.
Match: Cu(I)-responsive (transcriptional regulator n=1 Tax=Roseitalea porphyridii TaxID=1852022 RepID=A0A4P6V0L8_9HYPH)

HSP 1 Score: 166 bits (419), Expect = 1.320e-50
Identity = 80/121 (66.12%), Postives = 98/121 (80.99%), Query Frame = 1 
Query:    1 AAKQCSLPVKTIRYYDEIGLVSPRRAASGYREYSSADVHRLQFVARARGLGFSLDDCRHLLSLYEDRSRASADVKLIVQEKLTEIDQKISELQELRQTLSQLSEHCRGDNRPDCPILADLA 363
            AA+   LP KTIRYY+EIGLV P RAA+GYR+YS  D+HRL+FV RAR LGFS+++CR LLSLYED +RASADVK +  +K+ EI+ KI+ LQ LR TL+QL EHC GD+RPDCPI+ DLA
Sbjct:    6 AAEATELPAKTIRYYEEIGLVRPARAANGYRDYSERDIHRLRFVQRARSLGFSIEECRLLLSLYEDEARASADVKALALDKIGEIEAKIANLQSLRATLTQLVEHCHGDDRPDCPIIDDLA 126
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs78076.1.1 vs.
Match: Transcriptional (regulator n=4 Tax=Thalassospira TaxID=168934 RepID=A0A1Q4UX24_9PROT)

HSP 1 Score: 166 bits (419), Expect = 1.360e-50
Identity = 79/122 (64.75%), Postives = 98/122 (80.33%), Query Frame = 1 
Query:    1 AAKQCSLPVKTIRYYDEIGLVSPRRAASGYREYSSADVHRLQFVARARGLGFSLDDCRHLLSLYEDRSRASADVKLIVQEKLTEIDQKISELQELRQTLSQLSEHCRGDNRPDCPILADLAG 366
            AA+QC LP KTIRYY+EIGLV P R A+GYR+Y   D+H+L+F+ R+RGLGFS+DDCR LLSLYEDR+RASADV+ I +  L +ID+KI EL+ L+ TL QL   C GD+RPDCPI+ DLAG
Sbjct:    6 AARQCGLPAKTIRYYEEIGLVMPGRLANGYRDYREQDLHKLRFLQRSRGLGFSIDDCRLLLSLYEDRNRASADVRQIAKAHLEDIDRKIEELKSLQATLRQLVHQCHGDDRPDCPIIEDLAG 127
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs78076.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Cu(I)-responsive1.180e-5364.75transcriptional regulator n=1 Tax=Oricola thermoph... [more]
Cu(I)-responsive3.730e-5365.35transcriptional regulator n=3 Tax=Hyphomicrobiales... [more]
Cu(I)-responsive1.520e-5265.57transcriptional regulator n=1 Tax=Ahrensia sp. Tax... [more]
Cu(I)-responsive1.670e-5265.57transcriptional regulator n=1 Tax=Hyphomicrobiales... [more]
Cu(I)-responsive5.970e-5263.93transcriptional regulator n=2 Tax=Hoeflea TaxID=27... [more]
Cu(I)-responsive9.330e-5264.75transcriptional regulator n=1 Tax=Rhodobium orient... [more]
Cu(I)-responsive3.790e-5161.42transcriptional regulator n=1 Tax=Lentilitoribacte... [more]
Cu(I)-responsive9.560e-5163.93transcriptional regulator n=1 Tax=Roseibium denham... [more]
Cu(I)-responsive1.320e-5066.12transcriptional regulator n=1 Tax=Roseitalea porph... [more]
Transcriptional1.360e-5064.75regulator n=4 Tax=Thalassospira TaxID=168934 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs78076contigH-canaliculatus_M_contigs78076:124..504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1528106.JRJE01000031_gene3647
PFAMsMerR,MerR-DNA-bind,MerR_1
Model size381
Max annot lvl204441|Rhodospirillales
KEGG koko:K19591
KEGG ModuleM00769
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.01e-53
EggNOG OGsCOG0789@1|root,COG0789@2|Bacteria,1RGX6@1224|Proteobacteria,2U98F@28211|Alphaproteobacteria,2JSR6@204441|Rhodospirillales
Descriptionhelix_turn_helix, mercury resistance
Cds size381
COG categoryK
BRITEko00000,ko00002,ko01504,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854117.2340872-CDS-H-canaliculatus_M_contigs78076:123..5041696854117.2340872-CDS-H-canaliculatus_M_contigs78076:123..504Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs78076 124..504 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs78076.1.1prot_H-canaliculatus_M_contigs78076.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs78076 124..504 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs78076.1.1

>prot_H-canaliculatus_M_contigs78076.1.1 ID=prot_H-canaliculatus_M_contigs78076.1.1|Name=mRNA_H-canaliculatus_M_contigs78076.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=127bp
AAKQCSLPVKTIRYYDEIGLVSPRRAASGYREYSSADVHRLQFVARARGL
GFSLDDCRHLLSLYEDRSRASADVKLIVQEKLTEIDQKISELQELRQTLS
QLSEHCRGDNRPDCPILADLAGNNNSA
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mRNA from alignment at H-canaliculatus_M_contigs78076:124..504-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs78076.1.1 ID=mRNA_H-canaliculatus_M_contigs78076.1.1|Name=mRNA_H-canaliculatus_M_contigs78076.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=381bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78076:124..504- (Hapterophycus canaliculatus Oshoro7m male)
GCTGCCAAGCAGTGTTCGCTTCCGGTAAAAACCATTCGCTACTATGACGA
GATCGGTCTTGTTTCACCGCGTCGGGCAGCGAGTGGTTACCGTGAGTATT
CTTCTGCAGACGTGCACCGTTTGCAGTTTGTGGCCCGAGCCCGTGGTTTA
GGGTTTTCACTTGACGACTGCCGTCACTTATTGTCGTTATATGAGGATCG
CAGTCGTGCGAGTGCTGATGTGAAGCTCATTGTGCAGGAAAAACTGACTG
AGATTGACCAGAAAATCTCAGAGTTACAGGAGCTGAGACAGACCTTGTCT
CAGTTGTCTGAACATTGTCGTGGTGATAACCGGCCTGATTGTCCGATTCT
GGCTGACCTGGCTGGTAACAATAACTCTGCT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs78076:124..504-

>mRNA_H-canaliculatus_M_contigs78076.1.1 ID=mRNA_H-canaliculatus_M_contigs78076.1.1|Name=mRNA_H-canaliculatus_M_contigs78076.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=381bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78076:124..504- (Hapterophycus canaliculatus Oshoro7m male)
GCTGCCAAGCAGTGTTCGCTTCCGGTAAAAACCATTCGCTACTATGACGA
GATCGGTCTTGTTTCACCGCGTCGGGCAGCGAGTGGTTACCGTGAGTATT
CTTCTGCAGACGTGCACCGTTTGCAGTTTGTGGCCCGAGCCCGTGGTTTA
GGGTTTTCACTTGACGACTGCCGTCACTTATTGTCGTTATATGAGGATCG
CAGTCGTGCGAGTGCTGATGTGAAGCTCATTGTGCAGGAAAAACTGACTG
AGATTGACCAGAAAATCTCAGAGTTACAGGAGCTGAGACAGACCTTGTCT
CAGTTGTCTGAACATTGTCGTGGTGATAACCGGCCTGATTGTCCGATTCT
GGCTGACCTGGCTGGTAACAATAACTCTGCT
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