mRNA_H-canaliculatus_M_contigs78057.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs78057.1.1
Unique NamemRNA_H-canaliculatus_M_contigs78057.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs78057.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs78057contigH-canaliculatus_M_contigs78057:2..505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Model size504
Hectar predicted targeting categoryother localisation
Exons1
Cds size330
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854116.9353833-CDS-H-canaliculatus_M_contigs78057:1..3311696854116.9353833-CDS-H-canaliculatus_M_contigs78057:1..331Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs78057 2..331 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854116.9462452-UTR-H-canaliculatus_M_contigs78057:331..5051696854116.9462452-UTR-H-canaliculatus_M_contigs78057:331..505Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs78057 332..505 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs78057.1.1prot_H-canaliculatus_M_contigs78057.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs78057 2..331 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs78057.1.1

>prot_H-canaliculatus_M_contigs78057.1.1 ID=prot_H-canaliculatus_M_contigs78057.1.1|Name=mRNA_H-canaliculatus_M_contigs78057.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=110bp
MVDHLSIVSPQGRGPVLRLGRQTMLPNSRRPYLAGNILHVAFALFLGGRH
SILSIFCEALPNSMGKTRGLGRFGATPLVSKCMVFSQSRPERFLALALVS
PLLLGQRVVL
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mRNA from alignment at H-canaliculatus_M_contigs78057:2..505-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs78057.1.1 ID=mRNA_H-canaliculatus_M_contigs78057.1.1|Name=mRNA_H-canaliculatus_M_contigs78057.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=504bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78057:2..505- (Hapterophycus canaliculatus Oshoro7m male)
CCACGTATACACTTATTTTTACTATTTGGATAGTCGTTTATTTTTTTCGT
AGTTATGTAGGATTTTTCGTTGTTGAAAACATGGGGATAACATTTGCCGC
ACTTTAGCTGGGTGCCCAGTCAGTAGGTAGGGGCGGAAGTGCTCCGAAGG
GGAACATTTGATGAAAGTTGCACAATGGTCGATCACTTGTCCATAGTTTC
TCCACAAGGACGAGGGCCGGTCCTCCGTCTCGGTCGCCAGACGATGTTGC
CCAACAGTCGTCGTCCTTATCTCGCAGGCAATATTTTGCACGTTGCCTTT
GCTCTCTTTCTGGGTGGTCGTCATTCAATTCTCAGTATTTTTTGTGAAGC
GTTACCCAACTCGATGGGGAAGACGAGGGGATTGGGGAGATTTGGGGCTA
CCCCGCTCGTGTCAAAATGTATGGTATTTTCCCAGTCTCGTCCTGAGCGC
TTTTTGGCCTTGGCGCTTGTGTCGCCATTATTGTTGGGGCAACGTGTGGT
TCTA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs78057:2..505-

>mRNA_H-canaliculatus_M_contigs78057.1.1 ID=mRNA_H-canaliculatus_M_contigs78057.1.1|Name=mRNA_H-canaliculatus_M_contigs78057.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=330bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78057:2..505- (Hapterophycus canaliculatus Oshoro7m male)
ATGGTCGATCACTTGTCCATAGTTTCTCCACAAGGACGAGGGCCGGTCCT
CCGTCTCGGTCGCCAGACGATGTTGCCCAACAGTCGTCGTCCTTATCTCG
CAGGCAATATTTTGCACGTTGCCTTTGCTCTCTTTCTGGGTGGTCGTCAT
TCAATTCTCAGTATTTTTTGTGAAGCGTTACCCAACTCGATGGGGAAGAC
GAGGGGATTGGGGAGATTTGGGGCTACCCCGCTCGTGTCAAAATGTATGG
TATTTTCCCAGTCTCGTCCTGAGCGCTTTTTGGCCTTGGCGCTTGTGTCG
CCATTATTGTTGGGGCAACGTGTGGTTCTA
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