mRNA_H-canaliculatus_M_contigs78041.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs78041.1.1
Unique NamemRNA_H-canaliculatus_M_contigs78041.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs78041.1.1 vs.
Match: PPM-type (phosphatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJS4_ECTSI)

HSP 1 Score: 225 bits (573), Expect = 1.210e-69
Identity = 112/127 (88.19%), Postives = 119/127 (93.70%), Query Frame = 1
Query:    1 VKGALTQAFLRVEREYLYQVKTAFELGFGAVARTGACAIMALVRDNRLFVANAGDCRAVLGRRRLSRRVVGGWTTGGAGEAEAVALSNDHNAKEQVEQAKLKKLHPFEGDVFTCKRPASCYVKGRLQ 381
            VK A+TQAFLRVEREYLYQVK AFELGFGAVARTGACAIMALVRDNRLFVANAGDCRAVLGRR+ +R +VGGW+TG  G+ EA+ALSNDHNAKEQ EQAKLKKLHPFEGDVFTCKRPASCYVKGRLQ
Sbjct:  174 VKSAITQAFLRVEREYLYQVKAAFELGFGAVARTGACAIMALVRDNRLFVANAGDCRAVLGRRKPTR-LVGGWSTGPGGDPEALALSNDHNAKEQAEQAKLKKLHPFEGDVFTCKRPASCYVKGRLQ 299          
BLAST of mRNA_H-canaliculatus_M_contigs78041.1.1 vs.
Match: Phosphatase (2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJE2_9STRA)

HSP 1 Score: 163 bits (412), Expect = 2.480e-46
Identity = 82/127 (64.57%), Postives = 96/127 (75.59%), Query Frame = 1
Query:    1 VKGALTQAFLRVEREYLYQVKTAFELGFGAVARTGACAIMALVRDNRLFVANAGDCRAVLGRRRLSRRVVGGWTTGGAGEAEAVALSNDHNAKEQVEQAKLKKLHPFEGDVFTCKRPASCYVKGRLQ 381
            + GAL++AFLRVERE+LYQV++AFELGFG VAR+GACA+ A++R + LFVANAGDCRAVLGRR             G    EAVALSNDHNA+E  EQAKL+ LHP E D+  CKR  SCYVKGRLQ
Sbjct:  119 ISGALSRAFLRVEREFLYQVQSAFELGFGDVARSGACALFAMIRGDNLFVANAGDCRAVLGRR----------AEDGTARMEAVALSNDHNAREPAEQAKLRALHPTEEDIIRCKRATSCYVKGRLQ 235          
BLAST of mRNA_H-canaliculatus_M_contigs78041.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V900_9STRA)

HSP 1 Score: 138 bits (347), Expect = 1.700e-36
Identity = 72/127 (56.69%), Postives = 89/127 (70.08%), Query Frame = 1
Query:    1 VKGALTQAFLRVEREYLYQVKTAFELGFGAVARTGACAIMALVRDNRLFVANAGDCRAVLGRRRLSRRVVGGWTTGGAGEAEAVALSNDHNAKEQVEQAKLKKLHPFEGDVFTCKRPASCYVKGRLQ 381
            V+GAL++AF RVER ++  +  +F  GFGAVAR G CA++ALVR  R+F+ANAGDCRAVLGRR+     + G T         VALS+DHN +E  EQ KL+K HP E +VF CKRP SCYVKG LQ
Sbjct:  160 VQGALSRAFERVERGFITLIHQSFNAGFGAVARVGTCALVALVRGERIFIANAGDCRAVLGRRQHKNGRIPGITH------VPVALSSDHNCREPKEQLKLRKWHPAEDNVFVCKRPDSCYVKGCLQ 280          
BLAST of mRNA_H-canaliculatus_M_contigs78041.1.1 vs.
Match: Protein (phosphatase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ASF7_PLAHL)

HSP 1 Score: 119 bits (297), Expect = 2.610e-29
Identity = 65/127 (51.18%), Postives = 82/127 (64.57%), Query Frame = 1
Query:    1 VKGALTQAFLRVEREYLYQVKTAFELGFGAVARTGACAIMALVRDNRLFVANAGDCRAVLGRRRLSRRVVGGWTTGGAGEAEAVALSNDHNAKEQVEQAKLKKLHPFEGDVFTCKRPASCYVKGRLQ 381
            V  A+ +AF R +R+ + +V +AF+LGFGAVAR G+CA +A V D+ L+VANAGD RAVLG+      V+G           A  LSND NA  + EQ KL K HP E +VFTC+ P SCYVKG LQ
Sbjct:  169 VTAAIQRAFGRTDRDLMTEVASAFKLGFGAVARCGSCACLAYVHDDTLYVANAGDIRAVLGKSGKEDGVIG-----------AEPLSNDQNAMVKSEQEKLVKEHPGETNVFTCRHPTSCYVKGALQ 284          
BLAST of mRNA_H-canaliculatus_M_contigs78041.1.1 vs.
Match: PPM-type (phosphatase domain-containing protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GCJ0_9STRA)

HSP 1 Score: 117 bits (294), Expect = 5.290e-29
Identity = 62/127 (48.82%), Postives = 80/127 (62.99%), Query Frame = 1
Query:    1 VKGALTQAFLRVEREYLYQVKTAFELGFGAVARTGACAIMALVRDNRLFVANAGDCRAVLGRRRLSRRVVGGWTTGGAGEAEAVALSNDHNAKEQVEQAKLKKLHPFEGDVFTCKRPASCYVKGRLQ 381
            +   L  AF++++R+   QV+ AF LGFGAV R GACA++  + DN L VANAGD R VLG R+ +         GG     A+ALSNDHNA    EQ KL++ HP E +V+ C+R  SCYVKG LQ
Sbjct:  139 ISEMLQDAFVQLDRDLAAQVQPAFNLGFGAVGRCGACALLVYIHDNVLSVANAGDTRCVLGSRKEN---------GGTPALTAIALSNDHNAMSANEQEKLRREHPGEANVYKCRRSDSCYVKGALQ 256          
BLAST of mRNA_H-canaliculatus_M_contigs78041.1.1 vs.
Match: Protein (phosphatase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TS31_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.270e-28
Identity = 63/135 (46.67%), Postives = 83/135 (61.48%), Query Frame = 1
Query:   10 ALTQAFLRVEREYLYQVKTAFELGFGAVARTGACAIMALVRDNRLFVANAGDCRAVLGRRRL--SRRVVGGWT---------TGGAGEAEAVALSNDHNAKEQVEQAKLKKLHPFEGDVFTCKRPASCYVKGRLQ 381
            AL +AF R +R  +++V  AFE+G G VA+ GACA+  L++ + L+VANAGDCRAV+G+R      +  GG           TG  G+  AVALS DHNAK   E + L + HP E D+  CK   +CYVKGRLQ
Sbjct:   13 ALVRAFERTDRGVIHKVHHAFEIGLGHVAKVGACALAVLIKGHHLYVANAGDCRAVIGKRSPPPKEKAAGGKRGKKASPVSGTGRGGDYHAVALSEDHNAKLPKEASALAQAHPGEPDIVKCKHANACYVKGRLQ 147          
BLAST of mRNA_H-canaliculatus_M_contigs78041.1.1 vs.
Match: PPM-type (phosphatase domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XY68_9STRA)

HSP 1 Score: 115 bits (288), Expect = 5.830e-28
Identity = 63/127 (49.61%), Postives = 80/127 (62.99%), Query Frame = 1
Query:    1 VKGALTQAFLRVEREYLYQVKTAFELGFGAVARTGACAIMALVRDNRLFVANAGDCRAVLGRRRLSRRVVGGWTTGGAGEAEAVALSNDHNAKEQVEQAKLKKLHPFEGDVFTCKRPASCYVKGRLQ 381
            V  A+ +AF R +RE + QV  AF+LGFGAVAR G+CA+  LV ++ L+VANAGD RAVLG+             G   +  AV LS+D NA  + EQ KL + HP E + FTC+ P SCYVKG LQ
Sbjct:  179 VAAAIQRAFGRTDRELMAQVAPAFKLGFGAVARCGSCALFTLVHEDFLYVANAGDIRAVLGK----------TDPGNREKLLAVPLSSDQNAMAKAEQEKLTREHPGEANAFTCRHPDSCYVKGALQ 295          
BLAST of mRNA_H-canaliculatus_M_contigs78041.1.1 vs.
Match: Protein (phosphatase 2C, putative n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C0R8_PYTIN)

HSP 1 Score: 114 bits (286), Expect = 1.570e-27
Identity = 62/129 (48.06%), Postives = 83/129 (64.34%), Query Frame = 1
Query:    1 VKGALTQAFLRVEREYLYQVKTAFELGFGAVARTGACAIMALVRDNRLFVANAGDCRAVLGRRRLSRRV-VGGWTTGGAGEAE-AVALSNDHNAKEQVEQAKLKKLHPFEGDVFTCKRPASCYVKGRLQ 381
            +  A+ + F R +R+ + +V  AF+LGFGAV R G+CA+M  VR   L VANAGD RAVLGR+  S    +GG ++  A +   AV LS D NA  + EQ +L++ HP E +V  C+RP SCYVKG LQ
Sbjct:  201 IASAIQRGFTRTDRDLMAKVSEAFQLGFGAVGRCGSCALMVYVRGTTLHVANAGDIRAVLGRKPASSSSWIGGGSSASASQPLIAVPLSQDQNAMAKSEQERLRREHPGEDNVVVCRRPDSCYVKGALQ 329          
BLAST of mRNA_H-canaliculatus_M_contigs78041.1.1 vs.
Match: PPM-type (phosphatase domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WZI0_9STRA)

HSP 1 Score: 113 bits (283), Expect = 2.680e-27
Identity = 61/125 (48.80%), Postives = 78/125 (62.40%), Query Frame = 1
Query:    7 GALTQAFLRVEREYLYQVKTAFELGFGAVARTGACAIMALVRDNRLFVANAGDCRAVLGRRRLSRRVVGGWTTGGAGEAEAVALSNDHNAKEQVEQAKLKKLHPFEGDVFTCKRPASCYVKGRLQ 381
             A+ +AF R +R+ + +V  AF+LGFGAV R G+CA +A V D  + VANAGD RAVLG+R    +         A    AV LS+D NA  + EQ KLK+ HP E + FTC+ P SCYVKG LQ
Sbjct:  166 AAIQRAFGRTDRDLMAEVAAAFKLGFGAVGRCGSCACLAYVHDGSVHVANAGDIRAVLGKRSKDGKATE------ANTLVAVPLSHDQNAMVKFEQEKLKQEHPGEANAFTCRHPESCYVKGALQ 284          
BLAST of mRNA_H-canaliculatus_M_contigs78041.1.1 vs.
Match: PPM-type (phosphatase domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B437_HYAAE)

HSP 1 Score: 112 bits (280), Expect = 5.490e-27
Identity = 64/129 (49.61%), Postives = 80/129 (62.02%), Query Frame = 1
Query:    1 VKGALTQAFLRVEREYLYQVKTAFELGFGAVARTGACAIMALVRDNRLFVANAGDCRAVLGRRRLSRRVVGGWTTGGAGEAEAVA--LSNDHNAKEQVEQAKLKKLHPFEGDVFTCKRPASCYVKGRLQ 381
            V  A+ +AF R +R+ + +V +AF+LGFGAVAR G+C  +A V D  ++VANAGD RAVLG+              G   A  VA  LSND NA  + EQ KL K HP E +VFTC+ P SCYVKG LQ
Sbjct:  146 VAAAIQRAFGRTDRDLMAEVASAFKLGFGAVARCGSCGCLAYVHDGTVYVANAGDIRAVLGKL-------------GEDAATIVAEPLSNDQNAMVKFEQEKLVKEHPDEANVFTCRHPDSCYVKGALQ 261          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs78041.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
PPM-type1.210e-6988.19phosphatase domain-containing protein n=2 Tax=Ecto... [more]
Phosphatase2.480e-4664.572C-like domain-containing protein n=1 Tax=Tribonem... [more]
Hypothetical1.700e-3656.69protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Protein2.610e-2951.18phosphatase n=1 Tax=Plasmopara halstedii TaxID=478... [more]
PPM-type5.290e-2948.82phosphatase domain-containing protein n=2 Tax=Albu... [more]
Protein1.270e-2846.67phosphatase n=1 Tax=Nannochloropsis gaditana TaxID... [more]
PPM-type5.830e-2849.61phosphatase domain-containing protein n=1 Tax=Pyth... [more]
Protein1.570e-2748.06phosphatase 2C, putative n=2 Tax=Pythium insidiosu... [more]
PPM-type2.680e-2748.80phosphatase domain-containing protein (Fragment) n... [more]
PPM-type5.490e-2749.61phosphatase domain-containing protein n=1 Tax=Hyal... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs78041contigH-canaliculatus_M_contigs78041:57..437 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FJS4
PFAMsPP2C
Model size381
Max annot lvl2759|Eukaryota
KEGG koko:K01102
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.98e-70
EggNOG OGsCOG0631@1|root,KOG0700@2759|Eukaryota
Ec32 ortholog descriptionProtein phosphatase 2C (PP2C)-like domain
Ec32 orthologEc-06_010370.1
EC3.1.3.43
Descriptionprotein serine/threonine phosphatase activity
Cds size381
COG categoryT
BRITEko00000,ko01000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854116.7786949-CDS-H-canaliculatus_M_contigs78041:56..4371696854116.7786949-CDS-H-canaliculatus_M_contigs78041:56..437Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs78041 57..437 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs78041.1.1prot_H-canaliculatus_M_contigs78041.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs78041 57..437 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs78041.1.1

>prot_H-canaliculatus_M_contigs78041.1.1 ID=prot_H-canaliculatus_M_contigs78041.1.1|Name=mRNA_H-canaliculatus_M_contigs78041.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=127bp
VKGALTQAFLRVEREYLYQVKTAFELGFGAVARTGACAIMALVRDNRLFV
ANAGDCRAVLGRRRLSRRVVGGWTTGGAGEAEAVALSNDHNAKEQVEQAK
LKKLHPFEGDVFTCKRPASCYVKGRLQ
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mRNA from alignment at H-canaliculatus_M_contigs78041:57..437-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs78041.1.1 ID=mRNA_H-canaliculatus_M_contigs78041.1.1|Name=mRNA_H-canaliculatus_M_contigs78041.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=381bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78041:57..437- (Hapterophycus canaliculatus Oshoro7m male)
GTAAAAGGTGCCCTGACCCAAGCCTTCTTGCGAGTGGAGAGGGAATACCT CTATCAGGTCAAGACCGCCTTCGAGCTCGGGTTCGGAGCGGTCGCGCGCA CCGGCGCCTGCGCCATCATGGCCCTCGTGCGGGACAACAGACTGTTCGTG GCGAACGCCGGGGACTGCAGGGCTGTGCTGGGGCGCCGCCGGCTCTCGCG GCGCGTGGTTGGCGGGTGGACTACGGGGGGGGCCGGGGAGGCGGAGGCGG TCGCCCTGAGTAACGACCACAACGCCAAGGAGCAGGTGGAGCAGGCCAAG CTTAAGAAGCTCCACCCTTTCGAGGGAGACGTGTTTACCTGCAAGCGACC CGCGTCGTGTTACGTCAAGGGGAGGCTGCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs78041:57..437-

>mRNA_H-canaliculatus_M_contigs78041.1.1 ID=mRNA_H-canaliculatus_M_contigs78041.1.1|Name=mRNA_H-canaliculatus_M_contigs78041.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=381bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78041:57..437- (Hapterophycus canaliculatus Oshoro7m male)
GTAAAAGGTGCCCTGACCCAAGCCTTCTTGCGAGTGGAGAGGGAATACCT
CTATCAGGTCAAGACCGCCTTCGAGCTCGGGTTCGGAGCGGTCGCGCGCA
CCGGCGCCTGCGCCATCATGGCCCTCGTGCGGGACAACAGACTGTTCGTG
GCGAACGCCGGGGACTGCAGGGCTGTGCTGGGGCGCCGCCGGCTCTCGCG
GCGCGTGGTTGGCGGGTGGACTACGGGGGGGGCCGGGGAGGCGGAGGCGG
TCGCCCTGAGTAACGACCACAACGCCAAGGAGCAGGTGGAGCAGGCCAAG
CTTAAGAAGCTCCACCCTTTCGAGGGAGACGTGTTTACCTGCAAGCGACC
CGCGTCGTGTTACGTCAAGGGGAGGCTGCAG
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