mRNA_H-canaliculatus_M_contigs78040.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs78040.1.1
Unique NamemRNA_H-canaliculatus_M_contigs78040.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs78040.1.1 vs.
Match: Hint (domain-containing protein n=2 Tax=Roseinatronobacter TaxID=121820 RepID=A0A543KHS1_9RHOB)

HSP 1 Score: 56.2 bits (134), Expect = 1.430e-7
Identity = 27/59 (45.76%), Postives = 39/59 (66.10%), Query Frame = 1
Query:   10 SPSDGELNILPNGQFLYVPDEGFSGQDSFKYVLQNSLGSSPEYTFVLHVVNENPNARDD 186
            SP +G+L I  +G+F+YVP+EGF G+DSF Y + +  G +   T  L+V N  P+A DD
Sbjct:  667 SPENGKLVIGADGEFIYVPEEGFFGEDSFTYTISDGKGGTDTATVNLNV-NAAPDANDD 724          
BLAST of mRNA_H-canaliculatus_M_contigs78040.1.1 vs.
Match: Hint (domain-containing protein n=1 Tax=Roseinatronobacter thiooxidans TaxID=121821 RepID=A0A2W7Q0U9_9RHOB)

HSP 1 Score: 56.2 bits (134), Expect = 1.430e-7
Identity = 27/61 (44.26%), Postives = 39/61 (63.93%), Query Frame = 1
Query:   13 PSDGELNILPNGQFLYVPDEGFSGQDSFKYVLQNSLGSSPEYTFVLHVVNENPNARDDDWT 195
            PS+G++ I  +G+F+Y+PDEGFSG DSF Y + +  G +   T  L  VN  P A DD ++
Sbjct:  751 PSNGKVVIGTDGKFIYIPDEGFSGTDSFTYTISDGKGETDTTTVTL-TVNGAPIAEDDGFS 810          
BLAST of mRNA_H-canaliculatus_M_contigs78040.1.1 vs.
Match: cadherin-like (domain-containing protein n=2 Tax=Pseudoalteromonas TaxID=53246 RepID=UPI000AE6583C)

HSP 1 Score: 55.8 bits (133), Expect = 1.940e-7
Identity = 26/62 (41.94%), Postives = 40/62 (64.52%), Query Frame = 1
Query:   13 PSDGELNILPNGQFLYVPDEGFSGQDSFKYVLQNSLGSSPEYTFVLHVVNENPNARDDDWTL 198
            P+ G ++I  N Q +Y+P  GFSGQDSF YV+ ++ G+S   T V+ + N+ PN  +D  T+
Sbjct:  258 PNFGHVSI-ENNQLVYIPQLGFSGQDSFDYVMLDNYGASSTATIVVDITNQLPNVLNDSITV 318          
BLAST of mRNA_H-canaliculatus_M_contigs78040.1.1 vs.
Match: Ig-like (domain-containing protein n=1 Tax=Maribellus sediminis TaxID=2696285 RepID=UPI00142FE754)

HSP 1 Score: 55.8 bits (133), Expect = 1.960e-7
Identity = 25/60 (41.67%), Postives = 37/60 (61.67%), Query Frame = 1
Query:   13 PSDGELNILPNGQFLYVPDEGFSGQDSFKYVLQNSLGSSPEYTFVLHVVNENPNARDDDW 192
            PS+G + I  +G   Y+PDEGF+G DSF Y++ +  G   E +  + VVN+ P A DD +
Sbjct: 1180 PSNGSVTINGDGTITYIPDEGFTGTDSFTYIVCDPSGLCDEASVTVTVVNQPPVANDDTY 1239          
BLAST of mRNA_H-canaliculatus_M_contigs78040.1.1 vs.
Match: tandem-95 (repeat protein n=1 Tax=Roseiconus lacunae TaxID=2605694 RepID=UPI001E42422D)

HSP 1 Score: 55.8 bits (133), Expect = 1.980e-7
Identity = 28/72 (38.89%), Postives = 37/72 (51.39%), Query Frame = 1
Query:    1 LTESPSDGELNILPNGQFLYVPDEGFSGQDSFKYVLQNSLGSSP-----EYTFVLHVVNENPNARDDDWTLD 201
            +   PSDG L++ PNG F+Y PD GF G DSF+Y   +  G  P      +  V   V   P A DD + +D
Sbjct: 2269 VVSGPSDGILSLTPNGSFVYTPDPGFVGLDSFEYRAVDPSGDDPTSVSHHHAIVTIRVTHAPTALDDSYPVD 2340          
BLAST of mRNA_H-canaliculatus_M_contigs78040.1.1 vs.
Match: Vcbs (repeat domain protein n=2 Tax=Luminiphilus TaxID=1341118 RepID=B8KRU0_9GAMM)

HSP 1 Score: 55.5 bits (132), Expect = 2.680e-7
Identity = 27/62 (43.55%), Postives = 38/62 (61.29%), Query Frame = 1
Query:    1 LTESPSDGELNILPNGQFLYVPDEGFSGQDSFKYVLQNSLGSSPEYTFVLHVVNENPNARDD 186
            L E PS+G ++I  +G F Y P+EGFSG+DSF Y++ +  G + E   V  V  E+PN   D
Sbjct:  221 LVEEPSNGTVSIDADGDFTYTPNEGFSGEDSFIYMIDDGNGGTDE-AVVRIVTGEDPNTAPD 281          
BLAST of mRNA_H-canaliculatus_M_contigs78040.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tautonia sociabilis TaxID=2080755 RepID=A0A432MBR7_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 4.780e-7
Identity = 25/57 (43.86%), Postives = 34/57 (59.65%), Query Frame = 1
Query:    1 LTESPSDGELNILPNGQFLYVPDEGFSGQDSFKYVLQNSLGSSPEYTFVLHVVNENP 171
            L   PS+G + + P+G F+Y P  GF GQDSF+Y      G+S E T  + VVN +P
Sbjct:   69 LASGPSNGTVELQPDGSFIYTPSPGFVGQDSFRYTATMD-GASDEATVYIDVVNVDP 124          
BLAST of mRNA_H-canaliculatus_M_contigs78040.1.1 vs.
Match: INTEIN_C_TER (domain-containing protein n=2 Tax=Polystyrenella longa TaxID=2528007 RepID=A0A518CTC7_9PLAN)

HSP 1 Score: 54.7 bits (130), Expect = 5.040e-7
Identity = 24/55 (43.64%), Postives = 35/55 (63.64%), Query Frame = 1
Query:    1 LTESPSDGELNILPNGQFLYVPDEGFSGQDSFKYVLQNSLGSSPEYTFVLHVVNE 165
            + + P  G +++  +G F+Y+P+EGF+GQDSF Y L + L S    T VL V NE
Sbjct: 1592 VVDQPLHGTVSLSVSGDFIYIPEEGFTGQDSFGYQLTDGLVSGNTATVVLIVTNE 1646          
BLAST of mRNA_H-canaliculatus_M_contigs78040.1.1 vs.
Match: SdrD_B (domain-containing protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F8ZXY6_9ZZZZ)

HSP 1 Score: 54.3 bits (129), Expect = 6.570e-7
Identity = 24/53 (45.28%), Postives = 30/53 (56.60%), Query Frame = 1
Query:    1 LTESPSDGELNILPNGQFLYVPDEGFSGQDSFKYVLQNSLGSSPEYTFVLHVV 159
            L + PSDG L + P+G FLY PD GFSG DSF Y   ++   S      L V+
Sbjct:  128 LVDPPSDGTLELNPDGSFLYTPDTGFSGVDSFTYTANDAAAESDPVEVTLTVL 180          
BLAST of mRNA_H-canaliculatus_M_contigs78040.1.1 vs.
Match: InlB (B-repeat-containing protein n=1 Tax=Paenibacillus sp. JJ-223 TaxID=2905647 RepID=UPI001F25921B)

HSP 1 Score: 53.9 bits (128), Expect = 9.320e-7
Identity = 23/56 (41.07%), Postives = 33/56 (58.93%), Query Frame = 1
Query:    1 LTESPSDGELNILPNGQFLYVPDEGFSGQDSFKYVLQNSLGSSPEYTFVLHVVNEN 168
            L  SP++G + +  NG F+Y P+ GFSG DSF+Y+   S+G S   T  + V   N
Sbjct:  317 LINSPTNGAITLNSNGAFMYTPNTGFSGNDSFQYIGSGSIGDSNAATVTITVTATN 372          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs78040.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Hint1.430e-745.76domain-containing protein n=2 Tax=Roseinatronobact... [more]
Hint1.430e-744.26domain-containing protein n=1 Tax=Roseinatronobact... [more]
cadherin-like1.940e-741.94domain-containing protein n=2 Tax=Pseudoalteromona... [more]
Ig-like1.960e-741.67domain-containing protein n=1 Tax=Maribellus sedim... [more]
tandem-951.980e-738.89repeat protein n=1 Tax=Roseiconus lacunae TaxID=26... [more]
Vcbs2.680e-743.55repeat domain protein n=2 Tax=Luminiphilus TaxID=1... [more]
Uncharacterized4.780e-743.86protein n=1 Tax=Tautonia sociabilis TaxID=2080755 ... [more]
INTEIN_C_TER5.040e-743.64domain-containing protein n=2 Tax=Polystyrenella l... [more]
SdrD_B6.570e-745.28domain-containing protein (Fragment) n=1 Tax=marin... [more]
InlB9.320e-741.07B-repeat-containing protein n=1 Tax=Paenibacillus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs78040contigH-canaliculatus_M_contigs78040:149..349 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1144343.PMI41_02352
PFAMsHe_PIG
Model size201
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.76e-09
EggNOG OGsCOG2304@1|root,COG2911@1|root,COG2982@1|root,COG5625@1|root,COG2304@2|Bacteria,COG2911@2|Bacteria,COG2982@2|Bacteria,COG5625@2|Bacteria,1P8N9@1224|Proteobacteria,2TWRD@28211|Alphaproteobacteria
Descriptionoxidoreductase activity
Cds size201
COG categoryJ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854116.7410831-CDS-H-canaliculatus_M_contigs78040:148..3491696854116.7410831-CDS-H-canaliculatus_M_contigs78040:148..349Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs78040 149..349 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs78040.1.1prot_H-canaliculatus_M_contigs78040.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs78040 149..349 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs78040.1.1

>prot_H-canaliculatus_M_contigs78040.1.1 ID=prot_H-canaliculatus_M_contigs78040.1.1|Name=mRNA_H-canaliculatus_M_contigs78040.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=67bp
LTESPSDGELNILPNGQFLYVPDEGFSGQDSFKYVLQNSLGSSPEYTFVL
HVVNENPNARDDDWTLD
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mRNA from alignment at H-canaliculatus_M_contigs78040:149..349-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs78040.1.1 ID=mRNA_H-canaliculatus_M_contigs78040.1.1|Name=mRNA_H-canaliculatus_M_contigs78040.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=201bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78040:149..349- (Hapterophycus canaliculatus Oshoro7m male)
CTGACTGAATCACCCAGCGACGGCGAGTTGAATATCTTACCCAACGGTCA GTTTCTTTATGTGCCAGACGAAGGTTTCTCTGGACAGGACAGCTTCAAAT ATGTTCTGCAAAATAGCTTGGGATCAAGTCCTGAATACACATTCGTTCTG CATGTTGTCAACGAGAACCCAAACGCCCGAGATGACGACTGGACTCTAGA T
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs78040:149..349-

>mRNA_H-canaliculatus_M_contigs78040.1.1 ID=mRNA_H-canaliculatus_M_contigs78040.1.1|Name=mRNA_H-canaliculatus_M_contigs78040.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=201bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78040:149..349- (Hapterophycus canaliculatus Oshoro7m male)
CTGACTGAATCACCCAGCGACGGCGAGTTGAATATCTTACCCAACGGTCA
GTTTCTTTATGTGCCAGACGAAGGTTTCTCTGGACAGGACAGCTTCAAAT
ATGTTCTGCAAAATAGCTTGGGATCAAGTCCTGAATACACATTCGTTCTG
CATGTTGTCAACGAGAACCCAAACGCCCGAGATGACGACTGGACTCTAGA
T
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