mRNA_H-canaliculatus_M_contigs78040.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs78040.1.1 vs.
Match: Hint (domain-containing protein n=2 Tax=Roseinatronobacter TaxID=121820 RepID=A0A543KHS1_9RHOB) HSP 1 Score: 56.2 bits (134), Expect = 1.430e-7 Identity = 27/59 (45.76%), Postives = 39/59 (66.10%), Query Frame = 1
Query: 10 SPSDGELNILPNGQFLYVPDEGFSGQDSFKYVLQNSLGSSPEYTFVLHVVNENPNARDD 186
SP +G+L I +G+F+YVP+EGF G+DSF Y + + G + T L+V N P+A DD
Sbjct: 667 SPENGKLVIGADGEFIYVPEEGFFGEDSFTYTISDGKGGTDTATVNLNV-NAAPDANDD 724
BLAST of mRNA_H-canaliculatus_M_contigs78040.1.1 vs.
Match: Hint (domain-containing protein n=1 Tax=Roseinatronobacter thiooxidans TaxID=121821 RepID=A0A2W7Q0U9_9RHOB) HSP 1 Score: 56.2 bits (134), Expect = 1.430e-7 Identity = 27/61 (44.26%), Postives = 39/61 (63.93%), Query Frame = 1
Query: 13 PSDGELNILPNGQFLYVPDEGFSGQDSFKYVLQNSLGSSPEYTFVLHVVNENPNARDDDWT 195
PS+G++ I +G+F+Y+PDEGFSG DSF Y + + G + T L VN P A DD ++
Sbjct: 751 PSNGKVVIGTDGKFIYIPDEGFSGTDSFTYTISDGKGETDTTTVTL-TVNGAPIAEDDGFS 810
BLAST of mRNA_H-canaliculatus_M_contigs78040.1.1 vs.
Match: cadherin-like (domain-containing protein n=2 Tax=Pseudoalteromonas TaxID=53246 RepID=UPI000AE6583C) HSP 1 Score: 55.8 bits (133), Expect = 1.940e-7 Identity = 26/62 (41.94%), Postives = 40/62 (64.52%), Query Frame = 1
Query: 13 PSDGELNILPNGQFLYVPDEGFSGQDSFKYVLQNSLGSSPEYTFVLHVVNENPNARDDDWTL 198
P+ G ++I N Q +Y+P GFSGQDSF YV+ ++ G+S T V+ + N+ PN +D T+
Sbjct: 258 PNFGHVSI-ENNQLVYIPQLGFSGQDSFDYVMLDNYGASSTATIVVDITNQLPNVLNDSITV 318
BLAST of mRNA_H-canaliculatus_M_contigs78040.1.1 vs.
Match: Ig-like (domain-containing protein n=1 Tax=Maribellus sediminis TaxID=2696285 RepID=UPI00142FE754) HSP 1 Score: 55.8 bits (133), Expect = 1.960e-7 Identity = 25/60 (41.67%), Postives = 37/60 (61.67%), Query Frame = 1
Query: 13 PSDGELNILPNGQFLYVPDEGFSGQDSFKYVLQNSLGSSPEYTFVLHVVNENPNARDDDW 192
PS+G + I +G Y+PDEGF+G DSF Y++ + G E + + VVN+ P A DD +
Sbjct: 1180 PSNGSVTINGDGTITYIPDEGFTGTDSFTYIVCDPSGLCDEASVTVTVVNQPPVANDDTY 1239
BLAST of mRNA_H-canaliculatus_M_contigs78040.1.1 vs.
Match: tandem-95 (repeat protein n=1 Tax=Roseiconus lacunae TaxID=2605694 RepID=UPI001E42422D) HSP 1 Score: 55.8 bits (133), Expect = 1.980e-7 Identity = 28/72 (38.89%), Postives = 37/72 (51.39%), Query Frame = 1
Query: 1 LTESPSDGELNILPNGQFLYVPDEGFSGQDSFKYVLQNSLGSSP-----EYTFVLHVVNENPNARDDDWTLD 201
+ PSDG L++ PNG F+Y PD GF G DSF+Y + G P + V V P A DD + +D
Sbjct: 2269 VVSGPSDGILSLTPNGSFVYTPDPGFVGLDSFEYRAVDPSGDDPTSVSHHHAIVTIRVTHAPTALDDSYPVD 2340
BLAST of mRNA_H-canaliculatus_M_contigs78040.1.1 vs.
Match: Vcbs (repeat domain protein n=2 Tax=Luminiphilus TaxID=1341118 RepID=B8KRU0_9GAMM) HSP 1 Score: 55.5 bits (132), Expect = 2.680e-7 Identity = 27/62 (43.55%), Postives = 38/62 (61.29%), Query Frame = 1
Query: 1 LTESPSDGELNILPNGQFLYVPDEGFSGQDSFKYVLQNSLGSSPEYTFVLHVVNENPNARDD 186
L E PS+G ++I +G F Y P+EGFSG+DSF Y++ + G + E V V E+PN D
Sbjct: 221 LVEEPSNGTVSIDADGDFTYTPNEGFSGEDSFIYMIDDGNGGTDE-AVVRIVTGEDPNTAPD 281
BLAST of mRNA_H-canaliculatus_M_contigs78040.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tautonia sociabilis TaxID=2080755 RepID=A0A432MBR7_9BACT) HSP 1 Score: 54.7 bits (130), Expect = 4.780e-7 Identity = 25/57 (43.86%), Postives = 34/57 (59.65%), Query Frame = 1
Query: 1 LTESPSDGELNILPNGQFLYVPDEGFSGQDSFKYVLQNSLGSSPEYTFVLHVVNENP 171
L PS+G + + P+G F+Y P GF GQDSF+Y G+S E T + VVN +P
Sbjct: 69 LASGPSNGTVELQPDGSFIYTPSPGFVGQDSFRYTATMD-GASDEATVYIDVVNVDP 124
BLAST of mRNA_H-canaliculatus_M_contigs78040.1.1 vs.
Match: INTEIN_C_TER (domain-containing protein n=2 Tax=Polystyrenella longa TaxID=2528007 RepID=A0A518CTC7_9PLAN) HSP 1 Score: 54.7 bits (130), Expect = 5.040e-7 Identity = 24/55 (43.64%), Postives = 35/55 (63.64%), Query Frame = 1
Query: 1 LTESPSDGELNILPNGQFLYVPDEGFSGQDSFKYVLQNSLGSSPEYTFVLHVVNE 165
+ + P G +++ +G F+Y+P+EGF+GQDSF Y L + L S T VL V NE
Sbjct: 1592 VVDQPLHGTVSLSVSGDFIYIPEEGFTGQDSFGYQLTDGLVSGNTATVVLIVTNE 1646
BLAST of mRNA_H-canaliculatus_M_contigs78040.1.1 vs.
Match: SdrD_B (domain-containing protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F8ZXY6_9ZZZZ) HSP 1 Score: 54.3 bits (129), Expect = 6.570e-7 Identity = 24/53 (45.28%), Postives = 30/53 (56.60%), Query Frame = 1
Query: 1 LTESPSDGELNILPNGQFLYVPDEGFSGQDSFKYVLQNSLGSSPEYTFVLHVV 159
L + PSDG L + P+G FLY PD GFSG DSF Y ++ S L V+
Sbjct: 128 LVDPPSDGTLELNPDGSFLYTPDTGFSGVDSFTYTANDAAAESDPVEVTLTVL 180
BLAST of mRNA_H-canaliculatus_M_contigs78040.1.1 vs.
Match: InlB (B-repeat-containing protein n=1 Tax=Paenibacillus sp. JJ-223 TaxID=2905647 RepID=UPI001F25921B) HSP 1 Score: 53.9 bits (128), Expect = 9.320e-7 Identity = 23/56 (41.07%), Postives = 33/56 (58.93%), Query Frame = 1
Query: 1 LTESPSDGELNILPNGQFLYVPDEGFSGQDSFKYVLQNSLGSSPEYTFVLHVVNEN 168
L SP++G + + NG F+Y P+ GFSG DSF+Y+ S+G S T + V N
Sbjct: 317 LINSPTNGAITLNSNGAFMYTPNTGFSGNDSFQYIGSGSIGDSNAATVTITVTATN 372 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs78040.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs78040.1.1 >prot_H-canaliculatus_M_contigs78040.1.1 ID=prot_H-canaliculatus_M_contigs78040.1.1|Name=mRNA_H-canaliculatus_M_contigs78040.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=67bp LTESPSDGELNILPNGQFLYVPDEGFSGQDSFKYVLQNSLGSSPEYTFVLback to top mRNA from alignment at H-canaliculatus_M_contigs78040:149..349- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs78040.1.1 ID=mRNA_H-canaliculatus_M_contigs78040.1.1|Name=mRNA_H-canaliculatus_M_contigs78040.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=201bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78040:149..349- (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs78040:149..349- >mRNA_H-canaliculatus_M_contigs78040.1.1 ID=mRNA_H-canaliculatus_M_contigs78040.1.1|Name=mRNA_H-canaliculatus_M_contigs78040.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=201bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78040:149..349- (Hapterophycus canaliculatus Oshoro7m male)back to top |