mRNA_H-canaliculatus_M_contigs7777.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7777.2.1
Unique NamemRNA_H-canaliculatus_M_contigs7777.2.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7777.2.1 vs.
Match: Dimer_Tnp_hAT (domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA14_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 2.010e-24
Identity = 50/66 (75.76%), Postives = 56/66 (84.85%), Query Frame = 1
Query:   49 MFISFTIHFVDGDSLRTIDLDCQPLNVTHSGENIANELKAIIVRKGLNPMKCMGITTDNASNMINA 246
            MFISFTIHFVDG++LRTIDL C+P NVTHSGENIA ELK+I+   GL+P KC GIT DNASNMI A
Sbjct:    1 MFISFTIHFVDGETLRTIDLACRPFNVTHSGENIAKELKSILTDAGLDPKKCTGITMDNASNMIRA 66          
BLAST of mRNA_H-canaliculatus_M_contigs7777.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Rhizophagus irregularis (strain DAOM 197198w) TaxID=1432141 RepID=A0A015I9G2_RHIIW)

HSP 1 Score: 60.8 bits (146), Expect = 3.930e-9
Identity = 32/76 (42.11%), Postives = 47/76 (61.84%), Query Frame = 1
Query:   16 STDIWTGRHRKMFISFTIHFVDGD-SLRTIDLDCQPLNVTHSGENIANELKAIIVRKGLNPMKCMGITTDNASNMI 240
            ++D+WT  +   F+S TIH+VD    L+   LD  P+ V HSG N+AN +  ++   GL   K + +TTDNAS+MI
Sbjct:   46 TSDMWTASNSSSFLSLTIHYVDSSWKLKNFLLDIIPIEVRHSGYNMANAIMEVLREFGL-AEKTLALTTDNASSMI 120          
BLAST of mRNA_H-canaliculatus_M_contigs7777.2.1 vs.
Match: zinc (finger BED domain-containing protein 1-like n=1 Tax=Oreochromis niloticus TaxID=8128 RepID=UPI000DF15BBF)

HSP 1 Score: 55.5 bits (132), Expect = 4.100e-7
Identity = 27/77 (35.06%), Postives = 45/77 (58.44%), Query Frame = 1
Query:   16 STDIWTGRHRKMFISFTIHFVDGDSLRTIDLDCQPLNVTHSGENIANELKAIIVRKGLNPMKCMGITTDNASNMINA 246
            +TD+W+ R  K +++ TIHF++   L+T           H+GE+IA  L+ ++    LNP   + ITTDN +N++ A
Sbjct:   60 TTDMWSSRTCKPYMTVTIHFMEDWELKTARFQTSYFPQDHTGEHIAEALQDVLKTWKLNPTGLVAITTDNGANIVKA 136          
BLAST of mRNA_H-canaliculatus_M_contigs7777.2.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z498_PHYSP)

HSP 1 Score: 52.4 bits (124), Expect = 1.330e-6
Identity = 27/72 (37.50%), Postives = 41/72 (56.94%), Query Frame = 1
Query:    4 FYGGSTDIWTGRHRKMFISFTIHFVDGD-SLRTIDLDCQPLNVTHSGENIANELKAIIVRKGLNPMKCMGIT 216
            +Y  STDIWT R ++ FISFT+H++D +  +    L+ +PL   H    IA+ L+      GL+ M C+  T
Sbjct:   54 YYSASTDIWTARSKRGFISFTLHYLDENFKMHCWILEIKPLPGKHDAYKIADALQESCELLGLDSMSCLAHT 125          
BLAST of mRNA_H-canaliculatus_M_contigs7777.2.1 vs.
Match: BED-type (domain-containing protein n=31 Tax=Oryza TaxID=4527 RepID=Q587Q6_ORYSJ)

HSP 1 Score: 51.2 bits (121), Expect = 1.500e-5
Identity = 28/73 (38.36%), Postives = 45/73 (61.64%), Query Frame = 1
Query:   16 STDIWTGRHRKMFISFTIHFVDGD-SLRTIDLDCQPLNVTHSGENIANELKAIIVRKGLNPMKCMGITTDNAS 231
            ++DIW+ R R+ ++S  +HFVD D  L+   L  + ++V+H+GENIA  ++ +I    L   K   +T DNAS
Sbjct:  234 TSDIWSSRAREDYLSVVVHFVDDDWQLQKRVLGLRLIDVSHTGENIAERIREVINEFNLAD-KIFAVTLDNAS 305          
BLAST of mRNA_H-canaliculatus_M_contigs7777.2.1 vs.
Match: HAT (family dimerisation domain containing protein, expressed n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q2R271_ORYSJ)

HSP 1 Score: 51.2 bits (121), Expect = 1.520e-5
Identity = 28/73 (38.36%), Postives = 45/73 (61.64%), Query Frame = 1
Query:   16 STDIWTGRHRKMFISFTIHFVDGD-SLRTIDLDCQPLNVTHSGENIANELKAIIVRKGLNPMKCMGITTDNAS 231
            ++DIW+ R R+ ++S  +HFVD D  L+   L  + ++V+H+GENIA  ++ +I    L   K   +T DNAS
Sbjct:  234 TSDIWSSRAREDYLSVVVHFVDDDWQLQKRVLGLRLIDVSHTGENIAERIREVINEFNLAD-KIFAVTLDNAS 305          
BLAST of mRNA_H-canaliculatus_M_contigs7777.2.1 vs.
Match: Uncharacterized (protein n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7T8K7_AMPQE)

HSP 1 Score: 50.4 bits (119), Expect = 2.040e-5
Identity = 26/71 (36.62%), Postives = 44/71 (61.97%), Query Frame = 1
Query:    1 KFYGGSTDIWTGRHRKMFISFTIHFVDGD-SLRTIDLDCQPLNVTHSGENIANELKAIIVRKGLNPMKCMG 210
            K+Y  +TD+WT    +++I+ T+H++DG+ SL    LD   L   H+G+NIAN +  II  + L  ++ +G
Sbjct:  162 KYYAITTDLWTSGSCELYITLTVHYIDGEWSLELKCLDTVALFADHTGDNIANCVTDIIDIRLLEGLETLG 232          
BLAST of mRNA_H-canaliculatus_M_contigs7777.2.1 vs.
Match: uncharacterized (protein LOC117173933 n=1 Tax=Belonocnema kinseyi TaxID=2817044 RepID=UPI00143E06FF)

HSP 1 Score: 49.7 bits (117), Expect = 3.030e-5
Identity = 21/78 (26.92%), Postives = 45/78 (57.69%), Query Frame = 1
Query:   16 STDIWTGRH-RKMFISFTIHFVDGDSLRTIDLDCQPLNVTHSGENIANELKAIIVRKGLNPMKCMGITTDNASNMINA 246
            +T  WT R+  K ++  T+H+ +  S+++++L+C PLN +H+ + +  +L  +     +       + TDNA+N++ A
Sbjct:   16 NTHNWTDRNTNKSYLGLTVHYPEPSSIKSVELECFPLNESHTSDCLCTQLDNLCQEWNILRSSISSVITDNAANIVKA 93          
BLAST of mRNA_H-canaliculatus_M_contigs7777.2.1 vs.
Match: BED-type (domain-containing protein n=1 Tax=Sparus aurata TaxID=8175 RepID=A0A671XK97_SPAAU)

HSP 1 Score: 49.7 bits (117), Expect = 5.000e-5
Identity = 25/78 (32.05%), Postives = 43/78 (55.13%), Query Frame = 1
Query:   16 STDIWTGRHRKMFISFTIHFVDGDS-LRTIDLDCQPLNVTHSGENIANELKAIIVRKGLNPMKCMGITTDNASNMINA 246
            +TD W+    +  +  T HF+D DS +R + LD   L   H+  N++  + +I+ +  +     + ITTDNA+N +NA
Sbjct:  176 TTDRWSSLATESHVIVTAHFIDEDSEMRNVILDTSELQTAHTAANVSTCIDSILRQYHVERESVLAITTDNATNYVNA 253          
BLAST of mRNA_H-canaliculatus_M_contigs7777.2.1 vs.
Match: Os07g0469700 (protein n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=C7J4V7_ORYSJ)

HSP 1 Score: 49.3 bits (116), Expect = 7.020e-5
Identity = 26/73 (35.62%), Postives = 45/73 (61.64%), Query Frame = 1
Query:   16 STDIWTGRHRKMFISFTIHFVDGD-SLRTIDLDCQPLNVTHSGENIANELKAIIVRKGLNPMKCMGITTDNAS 231
            ++DIW+ R ++ ++S  IHF+D D  ++   L  + ++V+H+GENIA  ++ +I    L   K   +T DNAS
Sbjct:  220 TSDIWSSRAKEDYLSVVIHFIDDDWQMQKRVLGLRLIDVSHTGENIAERIREVIDEFNLAD-KIFAVTMDNAS 291          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7777.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
Dimer_Tnp_hAT2.010e-2475.76domain-containing protein n=2 Tax=Ectocarpus sp. C... [more]
Uncharacterized3.930e-942.11protein n=1 Tax=Rhizophagus irregularis (strain DA... [more]
zinc4.100e-735.06finger BED domain-containing protein 1-like n=1 Ta... [more]
Uncharacterized1.330e-637.50protein (Fragment) n=1 Tax=Phytophthora sojae (str... [more]
BED-type1.500e-538.36domain-containing protein n=31 Tax=Oryza TaxID=452... [more]
HAT1.520e-538.36family dimerisation domain containing protein, exp... [more]
Uncharacterized2.040e-536.62protein n=2 Tax=Amphimedon queenslandica TaxID=400... [more]
uncharacterized3.030e-526.92protein LOC117173933 n=1 Tax=Belonocnema kinseyi T... [more]
BED-type5.000e-532.05domain-containing protein n=1 Tax=Sparus aurata Ta... [more]
Os07g04697007.020e-535.62protein n=2 Tax=Oryza sativa subsp. japonica TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7777contigH-canaliculatus_M_contigs7777:3055..3300 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog144197.XP_008290989.1
PFAMsDUF659,Dimer_Tnp_hAT,zf-BED
Model size246
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.7e-11
EggNOG OGsKOG1121@1|root,KOG1121@2759|Eukaryota,39RW9@33154|Opisthokonta,3BH13@33208|Metazoa,3D40F@33213|Bilateria,48HWP@7711|Chordata,49G1T@7742|Vertebrata,4A6PI@7898|Actinopterygii
DescriptionBED zinc finger
Cds size246
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854114.6062293-CDS-H-canaliculatus_M_contigs7777:3054..33001696854114.6062293-CDS-H-canaliculatus_M_contigs7777:3054..3300Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7777 3055..3300 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7777.2.1prot_H-canaliculatus_M_contigs7777.2.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7777 3055..3300 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7777.2.1

>prot_H-canaliculatus_M_contigs7777.2.1 ID=prot_H-canaliculatus_M_contigs7777.2.1|Name=mRNA_H-canaliculatus_M_contigs7777.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=82bp
KFYGGSTDIWTGRHRKMFISFTIHFVDGDSLRTIDLDCQPLNVTHSGENI
ANELKAIIVRKGLNPMKCMGITTDNASNMINA
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mRNA from alignment at H-canaliculatus_M_contigs7777:3055..3300-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7777.2.1 ID=mRNA_H-canaliculatus_M_contigs7777.2.1|Name=mRNA_H-canaliculatus_M_contigs7777.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=246bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7777:3055..3300- (Hapterophycus canaliculatus Oshoro7m male)
AAGTTCTACGGTGGGTCCACGGACATCTGGACGGGCAGACACCGGAAAAT GTTCATCTCTTTCACCATCCACTTCGTCGACGGAGACTCCTTGCGCACGA TCGACCTCGATTGCCAGCCATTGAACGTGACACACAGTGGCGAGAACATC GCGAACGAGCTCAAAGCCATCATCGTGAGGAAGGGTTTGAACCCGATGAA GTGCATGGGCATCACCACCGACAACGCGTCCAACATGATCAACGCC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7777:3055..3300-

>mRNA_H-canaliculatus_M_contigs7777.2.1 ID=mRNA_H-canaliculatus_M_contigs7777.2.1|Name=mRNA_H-canaliculatus_M_contigs7777.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=246bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7777:3055..3300- (Hapterophycus canaliculatus Oshoro7m male)
AAGTTCTACGGTGGGTCCACGGACATCTGGACGGGCAGACACCGGAAAAT
GTTCATCTCTTTCACCATCCACTTCGTCGACGGAGACTCCTTGCGCACGA
TCGACCTCGATTGCCAGCCATTGAACGTGACACACAGTGGCGAGAACATC
GCGAACGAGCTCAAAGCCATCATCGTGAGGAAGGGTTTGAACCCGATGAA
GTGCATGGGCATCACCACCGACAACGCGTCCAACATGATCAACGCC
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