mRNA_H-canaliculatus_M_contigs7772.1.3 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7772.1.3
Unique NamemRNA_H-canaliculatus_M_contigs7772.1.3
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7772.1.3 vs.
Match: Cysteine--tRNA (ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX39_ECTSI)

HSP 1 Score: 373 bits (957), Expect = 2.140e-124
Identity = 203/263 (77.19%), Postives = 220/263 (83.65%), Query Frame = 1
Query:    1 GKPFCNCWVHNAFVNVDGEKMSKSKGNFLTLKGTLATALDVRAFRYLVVSSQYRTMLGFSSKSLEGAKNTVQRLDKLRVALEAAAAVGKGTEGGDTEEVSPELRDSLPQSLKGFDAGMNDDLNTPRAAASLFAVVKAGESALKRARSAGXXXXXXAADVSTP--SLRP-ADARYLLAALDRMDSVFGVFYEPSGYAAAK---DGAGGGEPEEVPEVMAELLARRLAARESKDWATADAVRDEIKALGYAVKDVKGKDPVVSRI 771
            GKPFC CWVHNAFVNVDGEKMSKSKGNFLTLK TLATALDVRAFRYLVVSSQYRT LGFS KSL+ AKNT++RLDKLRVALEAAAA G   E GD  EVS EL + +P+SL+GFDAGMNDDLNTPRAAASLFAVVKAGE+ALKR RSA       AA   +P  SL P  DA+YLLAALDRMDSVFG+FYEP+GY AA    D  G G+  ++P  MAELLARRLAARE+KDWATADAVRDEIKALGY+VKDVKGKDPVVSRI
Sbjct:  273 GKPFCRCWVHNAFVNVDGEKMSKSKGNFLTLKSTLATALDVRAFRYLVVSSQYRTTLGFSMKSLQSAKNTLRRLDKLRVALEAAAAAGNEEERGDASEVSRELLEVVPKSLEGFDAGMNDDLNTPRAAASLFAVVKAGENALKRVRSANADGGDTAAAGGSPPQSLLPQVDAKYLLAALDRMDSVFGIFYEPAGYEAANTGGDSGGDGKEADLPGEMAELLARRLAARENKDWATADAVRDEIKALGYSVKDVKGKDPVVSRI 535          
BLAST of mRNA_H-canaliculatus_M_contigs7772.1.3 vs.
Match: Cysteine--tRNA (ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J887_9PHAE)

HSP 1 Score: 379 bits (972), Expect = 1.020e-119
Identity = 205/263 (77.95%), Postives = 222/263 (84.41%), Query Frame = 1
Query:    1 GKPFCNCWVHNAFVNVDGEKMSKSKGNFLTLKGTLATALDVRAFRYLVVSSQYRTMLGFSSKSLEGAKNTVQRLDKLRVALEAAAAVGKGTEGGDTEEVSPELRDSLPQSLKGFDAGMNDDLNTPRAAASLFAVVKAGESALKRARSAGXXXXXXAADVSTP--SLRP-ADARYLLAALDRMDSVFGVFYEPSGYAAA---KDGAGGGEPEEVPEVMAELLARRLAARESKDWATADAVRDEIKALGYAVKDVKGKDPVVSRI 771
            GKPFC CWVHNAFVNVDGEKMSKSKGNFLTLK TL TALDVRAFRYLVVSSQYRT LGFS KSLE AKNT++RLDKLRVALEAAAA G   EGGD  EVS EL + +P+SL+GFDAGMNDDLNTPRAAASLFAVVKAGE+ALKR RSA       AA   +P  SL P  DA+YLLAALDRMDSVFG+FYEP+GY AA   +D  G GE  ++PE MAELLARRLAARE+KDWATADAVR+EIKALGY+VKDVKGKDPVVSRI
Sbjct:  969 GKPFCRCWVHNAFVNVDGEKMSKSKGNFLTLKSTLGTALDVRAFRYLVVSSQYRTTLGFSMKSLESAKNTLRRLDKLRVALEAAAAAGNEGEGGDAREVSRELLEVVPKSLEGFDAGMNDDLNTPRAAASLFAVVKAGENALKRVRSANADDGDTAAAGGSPPQSLLPQVDAKYLLAALDRMDSVFGIFYEPAGYEAANTGRDSGGDGEEADLPEEMAELLARRLAARENKDWATADAVREEIKALGYSVKDVKGKDPVVSRI 1231          
BLAST of mRNA_H-canaliculatus_M_contigs7772.1.3 vs.
Match: Cysteine--tRNA (ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U426_9STRA)

HSP 1 Score: 224 bits (571), Expect = 5.200e-66
Identity = 127/256 (49.61%), Postives = 167/256 (65.23%), Query Frame = 1
Query:    1 GKPFCNCWVHNAFVNVDGEKMSKSKGNFLTLKGTLATALDVRAFRYLVVSSQYRTMLGFSSKSLEGAKNTVQRLDKLRVALEAAAAVGKGTEGGDTEEVSPELRDSLPQSLKGFDAGMNDDLNTPRAAASLFAVVKAGESALKRARSAGXXXXXXAADVSTPSLRPADARYLLAALDRMDSVFGVFYEPSGYAAAKDGAGG-GEP-----EEVPEVMAELLARRLAARESKDWATADAVRDEIKA-LGYAVKDVKG 747
            G+ FC CWVHN FVNV+ EKMSKSKGNFLTL+G+L T LDVRAFRYLVV+SQYR  L F+++ L GA+ T+ RLDK++ AL   A  GKG E G   E+  E++  + +++ GF+AGM DDLNTPRAAA+LF +VKA E ALK                 +P LRP+ AR +LA L++MD+V G+FYEP      K+G    G P      +VP+   EL+ RR  A+E ++WA AD  RD +++  G  +KD KG
Sbjct:  344 GERFCRCWVHNGFVNVENEKMSKSKGNFLTLRGSLETGLDVRAFRYLVVTSQYRMPLNFNTEGLAGARKTILRLDKVKAALTRVAREGKGAEEGG--EIDEEMQGVIDKAVAGFEAGMADDLNTPRAAAALFTLVKATEKALKG---------------DSPRLRPSGARLVLATLEQMDAVLGIFYEPPLMEGEKEGGREEGAPVVVELADVPKEAQELVMRRAEAKEKREWALADENRDLLRSRFGLILKDKKG 582          
BLAST of mRNA_H-canaliculatus_M_contigs7772.1.3 vs.
Match: Cysteine--tRNA (ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDL4_9STRA)

HSP 1 Score: 214 bits (546), Expect = 3.570e-63
Identity = 132/257 (51.36%), Postives = 152/257 (59.14%), Query Frame = 1
Query:    1 GKPFCNCWVHNAFVNVDGEKMSKSKGNFLTLKGTLATALDVRAFRYLVVSSQYRTMLGFSSKSLEGAKNTVQRLDKLRVALEAAAAVGKGTEGGDTEEVSPELRDSLPQSLKGFDAGMNDDLNTPRAAASLFAVVKAGESALKRARSAGXXXXXXAADVSTPSLRPADARYLLAALDRMDSVFGVFYEPSGYAAAKDGAGGGEPEEVPEVMAELLARRLAARESKDWATADAVRDEIKALGYAVKDVKGKDPVVSRI 771
            GKPFCNCWVHN FVNV GEKMSKSKGNFLTL+G LATALDVRAFRYLVV+SQYRTML F+   L GAK+ V+RLDK R AL  A                          L  F  GM+DDLN PRAAA LFA++KA E   K    AG             SL  A A     ALD+MDSV GVFYEP GY    +G  GGE     E+  +    R AA+ +KDW++ADA R  I A G+A+KDV G    V+R+
Sbjct:  265 GKPFCNCWVHNGFVNVGGEKMSKSKGNFLTLRGALATALDVRAFRYLVVTSQYRTMLNFTPDVLAGAKSAVKRLDKARAALSKALEGXXXXXXXXXXXXXXXXXXXXXXXLAQFKGGMDDDLNAPRAAAGLFALIKAIEKEAK----AG-------------SLSAAAAHVYSEALDKMDSVLGVFYEPPGYEP--EGGQGGEEGGAVEIPPD----RAAAKAAKDWSSADAARAAITARGFAIKDVAGGGVEVTRL 498          
BLAST of mRNA_H-canaliculatus_M_contigs7772.1.3 vs.
Match: Cysteine--tRNA (ligase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S4N2_9STRA)

HSP 1 Score: 211 bits (538), Expect = 3.550e-62
Identity = 122/259 (47.10%), Postives = 159/259 (61.39%), Query Frame = 1
Query:    1 GKPFCNCWVHNAFVNVDGEKMSKSKGNFLTLKGTLATALDVRAFRYLVVSSQYRTMLGFSSKSLEGAKNTVQRLDKLRVAL-EAAAAVGKGTEGGDTEEVSPELRDSLPQSLKGFDAGMNDDLNTPRAAASLFAVVKAGESALKRARSAGXXXXXXAADVSTPSLRPADARYLLAALDRMDSVFGVFYE-PSGYAAAKDGAGGGEPEEVPEVMAELLARRLAARESKDWATADAVRDEIKALGYAVKDVKGKDPVVSRI 771
            GK FC  WVHN FVNV+ EKMSKSKGNFLTL+GT  T L+VRAFRY VV+SQYR  L FS ++L  +K+ +QRLD+ R A+ EAA ++G  +     +  SPE++  +   L      MNDDLNTPRA+ASLF ++K  +  L                   P L  AD   + +ALD  + V GVFY+ P  Y  + +     EP  VP  + EL+  R  A++ KDWATAD +RD+I A GYAVKDVKG DPV+S++
Sbjct:  246 GKQFCRHWVHNGFVNVNNEKMSKSKGNFLTLRGTFKTPLEVRAFRYFVVTSQYRMPLNFSPEALAASKSALQRLDRFRTAVFEAAVSLGPASS---EDAPSPEIQALVESCLDNLQVAMNDDLNTPRASASLFTLMKKAQPQL-------------------PDLTAADIALVSSALDTFNRVLGVFYDLPLSYFGSDE-----EPAPVPPHILELVHLRAEAKDKKDWATADQLRDDITAAGYAVKDVKGGDPVISKL 477          
BLAST of mRNA_H-canaliculatus_M_contigs7772.1.3 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T6Z7_9STRA)

HSP 1 Score: 202 bits (514), Expect = 8.950e-61
Identity = 120/265 (45.28%), Postives = 158/265 (59.62%), Query Frame = 1
Query:    1 GKPFCNCWVHNAFVNVDGEKMSKSKGNFLTLKGTLATALDVRAFRYLVVSSQYRTMLGFSSKSLEGAKNTVQRLDKLRVALEAAAAVGKGTEGGDTEEVSPELRDSLPQSLKGFDAGMNDDLNTPRAAASLFAVVKAGESALKRARSAGXXXXXXAADVSTPSLRPADARYLLA---ALDRMDSVFGVFYEPSGYAAAKDGAGGGEPEE-----VPEVMAELLARRLAARESKDWATADAVRDEIKALGYAVKDVKGKDPVVSRI 771
            GK FCNCW+HN FVN+  EKMSKSKGNFLTL+G      DVRA+RYL+V+S YR  L F+  ++  AK  ++RLD +R  L  +A  G      D EE + E+   + + L  F   + DDL+TPRA ASLFAVVKA E+  KR + A         D  T    P D   L A   A++ MD VFGVFY+    +++ +G G           VP  + EL+A R AA+++KDW  AD++R  I  LG+AVKDVKG +P+VSRI
Sbjct:   32 GKKFCNCWLHNGFVNIGDEKMSKSKGNFLTLRGACPKPDDVRAYRYLIVTSHYRNPLSFTDAAMGAAKGALKRLDSIRSRL-GSALEGYDNSKSDVEENTNEIVAVVQKELIKFQDALADDLSTPRAVASLFAVVKAAENEFKRVKKAEK-------DDDTDDSPPLDLCGLAAVKGAIEHMDEVFGVFYDVPKASSSSEGDGADXXXXXXGATVPPEVVELVAARAAAKDAKDWELADSLRSRIGELGFAVKDVKGGEPIVSRI 288          
BLAST of mRNA_H-canaliculatus_M_contigs7772.1.3 vs.
Match: Cysteine--tRNA (ligase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZX31_TRICV)

HSP 1 Score: 206 bits (524), Expect = 5.740e-59
Identity = 120/263 (45.63%), Postives = 160/263 (60.84%), Query Frame = 1
Query:    1 GKPFCNCWVHNAFVNVDGEKMSKSKGNFLTLKGTLATALDVRAFRYLVVSSQYRTMLGFSSKSLEGAKNTVQRLDKLRVALEAAAAVGKGTEGGDTEEVSPELRDSLPQSLKGFDAGMNDDLNTPRAAASLFAVVKAGESALKRARSAGXXXXXXAADVSTPSLRPADARYLLAALDRMDSVFGVFY------EPSGYAAAKDGAGGGEPEEVPEVMAELLARRLAARESKDWATADAVRDEIKALGYAVKDVKGKDPVVSRI 771
            GKPFC CW+HN FVN+  EKMSKSKGNFLTL+     + DVRA+RYLVVSS YR  L F+  ++  AK  ++R+D++R  +  A    +  EGG   E S  + +++ + L  FDA + DDL+ PRAAASLF VVKA E+  KR + A          V+ P L       +  A++ MD VFG+FY         G AA ++  G  +  EVPE +  L+A R AA+E+KDW  AD +R  I  LGYAVKDVKG +P+VSR+
Sbjct:  356 GKPFCACWLHNGFVNIGDEKMSKSKGNFLTLRTACPKSDDVRAYRYLVVSSHYRNPLSFTEAAVGAAKGALKRMDRVREMIGEALEGEESPEGG---EGSGPIAEAVKKELSNFDAAIADDLSMPRAAASLFGVVKAAENEFKRVKKAEKANDG----VADPPLDKVGLAAVRDAMETMDQVFGIFYTVPPPKNEDGSAAVEEDEG--DDAEVPEDVMTLVAERTAAKEAKDWELADLLRARIAELGYAVKDVKGGEPLVSRV 609          
BLAST of mRNA_H-canaliculatus_M_contigs7772.1.3 vs.
Match: Cysteine--tRNA (ligase n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y893_9STRA)

HSP 1 Score: 201 bits (512), Expect = 1.340e-57
Identity = 112/257 (43.58%), Postives = 155/257 (60.31%), Query Frame = 1
Query:   10 FCNCWVHNAFVNVDGEKMSKSKGNFLTLKGTLATALDVRAFRYLVVSSQYRTMLGFSSKSLEGAKNTVQRLDKLRVALEAAAAVGKGTEGGDTEEVSPELRDSLPQSLKGFDAGMNDDLNTPRAAASLFAVVKAGESALKRARSAGXXXXXXAADVSTPSLRPADARYLLAALDRMDSVFGVFYE---PSGYAAAKDGAGGGEPEEVPEVMAELLARRLAARESKDWATADAVRDEIKALGYAVKDVKGKDPVVSRI 771
            FCNCW HN FVN+  EKMSKS GNFLTL+    T LDVRA+RYLVVSSQYR  L F+ ++++ +KN + R+DK+R  ++ A         G + E++ ++   +P SL  F+A + DDL+ PRAAA+LF++VKA E   KR   A              SL       +L A+D+MD +FGVFYE                 +   VPE + +L++ R AA+++KDW  AD++R  I  LG+AVKDVKG +P+VSRI
Sbjct:  317 FCNCWFHNGFVNIGDEKMSKSLGNFLTLRTACPTGLDVRAYRYLVVSSQYRNPLAFTQQAMQASKNAITRIDKIRTQIQQALDDATVEGSGASSEIAQKV---VPASLANFEAALVDDLSMPRAAAALFSIVKAAEQEFKRIAKAK----------GEASLDICGLESILKAMDQMDQIFGVFYEVPLTKEXXXXXXXXXXXDDASVPEEVLQLVSERTAAKDAKDWELADSLRSRITELGFAVKDVKGGEPIVSRI 560          
BLAST of mRNA_H-canaliculatus_M_contigs7772.1.3 vs.
Match: Cysteine--tRNA (ligase n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7S4C9_PHATC)

HSP 1 Score: 199 bits (506), Expect = 1.170e-56
Identity = 111/257 (43.19%), Postives = 156/257 (60.70%), Query Frame = 1
Query:    1 GKPFCNCWVHNAFVNVDGEKMSKSKGNFLTLKGTLATALDVRAFRYLVVSSQYRTMLGFSSKSLEGAKNTVQRLDKLRVALEAAAAVGKGTEGGDTEEVSPELRDSLPQSLKGFDAGMNDDLNTPRAAASLFAVVKAGESALKRARSAGXXXXXXAADVSTPSLRPADARYLLAALDRMDSVFGVFYEPSGYAAAKDGAGGGEPEEVPEVMAELLARRLAARESKDWATADAVRDEIKALGYAVKDVKGKDPVVSRI 771
            G  FCNCW HN FVN+D EKMSKS GNFLTL+G   T  DVRA+RYL VSSQYR  L F+ +++  A+N + R+DK++  LE    V   +   +T +   EL      +L+ F+  + DDL+ PRA+A+LF++VKA E  LKR                  SL     R +L A+ +MD VFG+FY      + ++     E   +P+ + EL+ RR AA+E+KDW  ADA+R ++  LGYAVKDVKG+DP+V+++
Sbjct:  325 GNVFCNCWFHNGFVNMDNEKMSKSLGNFLTLRGACPTPDDVRAYRYLAVSSQYRQALAFTPQAMTAARNAIARMDKIKNQLEECTRVNGASVVDETTD--SELPTVARTALENFEVAICDDLSMPRASAALFSLVKAAEGELKRVNKVSDDEV---------SLDYTGLRRILDAMKQMDQVFGIFYRVP--VSEEEETAQEEALVIPDDVVELVERRTAAKEAKDWELADALRSQVTELGYAVKDVKGEDPIVTQL 568          
BLAST of mRNA_H-canaliculatus_M_contigs7772.1.3 vs.
Match: Hypothetical (protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YUP3_9EUKA)

HSP 1 Score: 192 bits (487), Expect = 1.370e-56
Identity = 111/262 (42.37%), Postives = 153/262 (58.40%), Query Frame = 1
Query:    1 GKPFCNCWVHNAFVNVDGEKMSKSKGNFLTLKGTLATALDVRAFRYLVVSSQYRTMLGFSSKSLEGAKNTVQRLDKLRVALEAAAAVGKGTEGGDTEEVSPELRDSLPQSLKGFDAGMNDDLNTPRAAASLFAVVKAGESALKRARSAGXXXXXXAADVSTPSLRPADARYLLAALDRMDSVFGVFYEPSGY-----AAAKDGAGGGEPEEVPEVMAELLARRLAARESKDWATADAVRDEIKALGYAVKDVKGKDPVVSRI 771
            GKPFCNCW+HN FVN+D EKMSKS GNF T++ +  TALDVRAFR+LV+SS YR  L F   +L+ A+ +V RLDKLR   E  A     T+G D +        ++ + +  F+AGMNDDLNTPRA A++F +VK+ E   K+ +  G               RPA  R +L  LDR+D+V GVFY P          AK+       E++ E + +++  R AA+  K+W  AD +RD++KA GY + D  G +  V R+
Sbjct:   60 GKPFCNCWIHNGFVNIDNEKMSKSLGNFKTIRDSFKTALDVRAFRWLVISSSYRNPLNFDENALKNARKSVVRLDKLRAKAEEGA-----TQGVDDDGDHAAFEAAIAKGMSAFEAGMNDDLNTPRAIAAVFQIVKSAEQLAKKGKLTG---------------RPA--RMILETLDRLDTVLGVFYIPEASHFEVEEEAKEVVV--SMEQLSESIRDMVLARQAAKLDKNWQQADELRDQLKAQGYVIVDKAGGELEVLRV 297          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7772.1.3 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Cysteine--tRNA2.140e-12477.19ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
Cysteine--tRNA1.020e-11977.95ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=8... [more]
Cysteine--tRNA5.200e-6649.61ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=... [more]
Cysteine--tRNA3.570e-6351.36ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
Cysteine--tRNA3.550e-6247.10ligase n=1 Tax=Rhizochromulina marina TaxID=103483... [more]
Hypothetical8.950e-6145.28protein n=1 Tax=Ditylum brightwellii TaxID=49249 R... [more]
Cysteine--tRNA5.740e-5945.63ligase (Fragment) n=1 Tax=Trieres chinensis TaxID=... [more]
Cysteine--tRNA1.340e-5743.58ligase n=1 Tax=Amphiprora paludosa TaxID=265537 Re... [more]
Cysteine--tRNA1.170e-5643.19ligase n=1 Tax=Phaeodactylum tricornutum (strain C... [more]
Hypothetical1.370e-5642.37protein n=1 Tax=Lotharella globosa TaxID=91324 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7772contigH-canaliculatus_M_contigs7772:3283..5053 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2850.Phatrdraft780
PFAMsDALR_2,tRNA-synt_1e
Model size774
Max annot lvl2836|Bacillariophyta
KEGG rclassRC00055,RC00523
KEGG koko:K01883
KEGG ReactionR03650
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.92e-57
EggNOG OGsCOG0215@1|root,KOG2007@2759|Eukaryota,2XASV@2836|Bacillariophyta
EC6.1.1.16
DescriptiontRNA synthetases class I (C) catalytic domain
Cds size774
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854114.3175826-CDS-H-canaliculatus_M_contigs7772:3282..33211696854114.3175826-CDS-H-canaliculatus_M_contigs7772:3282..3321Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7772 3283..3321 -
1696854114.3354607-CDS-H-canaliculatus_M_contigs7772:3558..39161696854114.3354607-CDS-H-canaliculatus_M_contigs7772:3558..3916Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7772 3559..3916 -
1696854114.3515253-CDS-H-canaliculatus_M_contigs7772:4510..46531696854114.3515253-CDS-H-canaliculatus_M_contigs7772:4510..4653Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7772 4511..4653 -
1696854114.362677-CDS-H-canaliculatus_M_contigs7772:4819..50531696854114.362677-CDS-H-canaliculatus_M_contigs7772:4819..5053Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7772 4820..5053 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7772.1.3prot_H-canaliculatus_M_contigs7772.1.3Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7772 3283..5053 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7772.1.3

>prot_H-canaliculatus_M_contigs7772.1.3 ID=prot_H-canaliculatus_M_contigs7772.1.3|Name=mRNA_H-canaliculatus_M_contigs7772.1.3|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=258bp
GKPFCNCWVHNAFVNVDGEKMSKSKGNFLTLKGTLATALDVRAFRYLVVS
SQYRTMLGFSSKSLEGAKNTVQRLDKLRVALEAAAAVGKGTEGGDTEEVS
PELRDSLPQSLKGFDAGMNDDLNTPRAAASLFAVVKAGESALKRARSAGG
GAAAAAADVSTPSLRPADARYLLAALDRMDSVFGVFYEPSGYAAAKDGAG
GGEPEEVPEVMAELLARRLAARESKDWATADAVRDEIKALGYAVKDVKGK
DPVVSRI*
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mRNA from alignment at H-canaliculatus_M_contigs7772:3283..5053-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7772.1.3 ID=mRNA_H-canaliculatus_M_contigs7772.1.3|Name=mRNA_H-canaliculatus_M_contigs7772.1.3|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1771bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7772:3283..5053- (Hapterophycus canaliculatus Oshoro7m male)
GGGAAGCCCTTCTGCAACTGCTGGGTGCACAACGCGTTCGTCAACGTTGA CGGCGAGAAGATGTCCAAGTCCAAGGGAAACTTTCTGACGCTCAAGGGCA CCCTGGCCACGGCCCTCGACGTCCGGGCGTTCCGCTACCTGGTGGTGTCT TCGCAGTACCGGACGATGCTCGGGTTCTCCAGCAAGTCCCTCGAGGGCGC GAAGAATACGGTTCAGCGACTGGACAAGCTGAGGGTGCGTGGATAACAAA GAAAGTGCCGGGCGCGTAAGAGGATGCGTGCCGCTTGCAGCCCCACGGCC GCTCGCTGGCGGAGGAGGAGTTCATACCCATGCATGCGCGCTCGAACTTG TCCGTCTCTAACGTCCTGTTCGCGGTGTGTGTGATGTTCGCGCGATGCAG GTGGCGTTGGAGGCCGCGGCAGCGGTCGGCAAAGGGACCGAGGGGGGGGA TACTGAAGAAGTATCCCCTGAGTTACGAGATTCACTTCCGCAGAGCCTGA AGGGCTTTGACGCCGGCATGAACGACGATCTCAACACCCCGCGGTGAGCA GCAACCGTCGCGGCCGTGTACCAAGAATCTCCGTGAAGCAAGACACGAGT CGGTAGTATCCTACCTTGGTGGTCTCGCCTTCACGGTTCGGTGGATGGAG CACCAAGACGTTCTTGGCTTGCTTTGACGCCGACTGCGTTGCGGTTGAGC GGATCGCCTGGCGTAGGCTCGCGTGTCCAGCCCGCGCTCCCAGTGTAGGC GTCCGGGTAGTGGCTTCTATGCTGTGGGGGCGATCACCAGTTTAGCTTCG TTATACGGGGGCCAGAGAGCGGTGGATCGGCGAAACGCGAACTTCGCCAA CTCGTACATGCGAGCGGGAGCGGCCTTCACCTGCGTGTCTTGGCGCGTTC CAATGCCCCTCCATCCGATGCTCACGACCCCCCGTCGAGTGTCGGCGTGA ACGCTGGCCGGCCCATGCGCTGCACCTCGATCCCATCTCGGGGGCAAAAA GAAACGTTCGAGCGGTCCTATATGAAAGCGGCACTCCAACAGCATCAAAC GCTCTTTTTGTCGAAGGGCCTCCACGCACCCACCCGCTAGTGCACCCACC CACCCACTCAACATCCCGAACTGTGCGCTTTCCTCAGGGCGGCTGCTTCT CTGTTCGCGGTGGTGAAGGCCGGGGAGAGCGCGCTCAAGCGCGCGAGGTC TGCCGGCGGCGGAGCCGCCGCCGCTGCTGCAGATGTTTCAACACCGTCGC TGCGACCGGCGGACGCTAGATACTTGCTGGCTGCCCTCGACCGCATGGAC TCTGTGTTCGGGGTCTTCTACGAGCCTTCGGGGTACGCGGCGGCCAAGGA TGGCGCGGGTGGCGGCGAGCCAGAGGAGGTGCCGGAGGTCATGGCGGAGC TGCTGGCCCGGCGGCTCGCCGCGAGAGAGAGCAAAGACTGGGCGACAGCG GATGCCGTGCGCGACGAGATCAAGGCGCTGGGGTATGCGGTAAAGGTAAG GGAGGATGGGTGTGCTGTCCTCGACAGTGTAGCTCACCTGCTGTCGGCGC CGTGCGTGAAGCCGGACAACTTTGCCGTGGCCTGAGTTTTGCGGCGGTGT GTTCGGCAGCGAGGGTCCAGCGCTGCGTCCTCTCTCCCTCTCTAACTTCC TCTCCCTCTTTCGTGTTTCGCTCTCTTCTCTCCTCGCCTCGCGGTTCTGT CCCACGACGTCGTCTTCTGTTCGCCATCGCAGGATGTCAAGGGGAAGGAT CCGGTCGTGTCGCGAATTTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7772:3283..5053-

>mRNA_H-canaliculatus_M_contigs7772.1.3 ID=mRNA_H-canaliculatus_M_contigs7772.1.3|Name=mRNA_H-canaliculatus_M_contigs7772.1.3|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=774bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7772:3283..5053- (Hapterophycus canaliculatus Oshoro7m male)
GGGAAGCCCTTCTGCAACTGCTGGGTGCACAACGCGTTCGTCAACGTTGA
CGGCGAGAAGATGTCCAAGTCCAAGGGAAACTTTCTGACGCTCAAGGGCA
CCCTGGCCACGGCCCTCGACGTCCGGGCGTTCCGCTACCTGGTGGTGTCT
TCGCAGTACCGGACGATGCTCGGGTTCTCCAGCAAGTCCCTCGAGGGCGC
GAAGAATACGGTTCAGCGACTGGACAAGCTGAGGGTGGCGTTGGAGGCCG
CGGCAGCGGTCGGCAAAGGGACCGAGGGGGGGGATACTGAAGAAGTATCC
CCTGAGTTACGAGATTCACTTCCGCAGAGCCTGAAGGGCTTTGACGCCGG
CATGAACGACGATCTCAACACCCCGCGGGCGGCTGCTTCTCTGTTCGCGG
TGGTGAAGGCCGGGGAGAGCGCGCTCAAGCGCGCGAGGTCTGCCGGCGGC
GGAGCCGCCGCCGCTGCTGCAGATGTTTCAACACCGTCGCTGCGACCGGC
GGACGCTAGATACTTGCTGGCTGCCCTCGACCGCATGGACTCTGTGTTCG
GGGTCTTCTACGAGCCTTCGGGGTACGCGGCGGCCAAGGATGGCGCGGGT
GGCGGCGAGCCAGAGGAGGTGCCGGAGGTCATGGCGGAGCTGCTGGCCCG
GCGGCTCGCCGCGAGAGAGAGCAAAGACTGGGCGACAGCGGATGCCGTGC
GCGACGAGATCAAGGCGCTGGGGTATGCGGTAAAGGATGTCAAGGGGAAG
GATCCGGTCGTGTCGCGAATTTGA
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