mRNA_H-canaliculatus_M_contigs77716.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs77716.1.1
Unique NamemRNA_H-canaliculatus_M_contigs77716.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs77716.1.1 vs.
Match: tandem-95 (repeat protein n=1 Tax=Roseimaritima sediminicola TaxID=2662066 RepID=UPI0012984F1F)

HSP 1 Score: 73.9 bits (180), Expect = 8.050e-13
Identity = 37/88 (42.05%), Postives = 52/88 (59.09%), Query Frame = 1 
Query:   91 DVPGSLQDIGHRDVDVESHLTGEQNAVVADADQVISNFYYTFPKGQTQPYGNKSGGQPALNEMTAEMERRFREVFAILGTSFGIDFIE 354
            D PG+L +IGHR+++VE H+ G       D+D  I+   YTF + Q+  YG  + G P  N+M    E+RF+EV  + G  FGIDF E
Sbjct:  362 DNPGALDEIGHREIEVEQHIGG------GDSDNQITQIPYTFLRNQS--YGLDANGDPVYNQMNEAQEQRFKEVLELYGEQFGIDFYE 441
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BLAST of mRNA_H-canaliculatus_M_contigs77716.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7C7X7S4_9PLAN)

HSP 1 Score: 62.8 bits (151), Expect = 6.370e-9
Identity = 36/103 (34.95%), Postives = 57/103 (55.34%), Query Frame = 1 
Query:   46 IVSASLTSATEGQVIDVPGSLQDIGHRDVDVESHLTGEQNAVVADADQVISNFYYTFPKGQTQPYGNKSGGQPALNEMTAEMERRFREVFAILGTSFGIDFIE 354
            I+SA +T+  +   ID+PGS  + GHRD+ V+ H+ G     VAD+   +++  Y F +     YG  +  +   N +T   + R R++F I G  FGIDF+E
Sbjct:  611 IISAEITNDGQPFEIDLPGSSDEPGHRDIPVQDHIIG-----VADSLVGVTDISYNFQEN----YGKDTEDRVLRNAITEVQKERVRQIFEIFGEYFGIDFVE 704
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BLAST of mRNA_H-canaliculatus_M_contigs77716.1.1 vs.
Match: Dockerin (type I repeat protein n=1 Tax=Rosistilla ulvae TaxID=1930277 RepID=A0A517M7A0_9BACT)

HSP 1 Score: 60.8 bits (146), Expect = 3.070e-8
Identity = 35/96 (36.46%), Postives = 48/96 (50.00%), Query Frame = 1 
Query:   70 ATEGQVIDVPGSLQDIGHRDVDVESHLTGEQNAVVADADQ-VISNFYYTFPKGQTQPYGNKSGGQPALNEMTAEMERRFREVFAILGTSFGIDFIE 354
            A +  V++ PG   + G RD D  +H       +    +   IS  YY F    + PYG    GQ   N +TA  + R RE+F +LG S+GIDFIE
Sbjct:  776 ALDPYVLEFPGGFDEQGLRDFDQFAHFLSPDGDLYDGVEAPAISQLYYNF--NTSLPYGQNGFGQNLSNAITASQKERVREIFELLGDSWGIDFIE 869
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BLAST of mRNA_H-canaliculatus_M_contigs77716.1.1 vs.
Match: Dockerin (type I repeat protein n=2 Tax=Rosistilla oblonga TaxID=2527990 RepID=A0A518IVK0_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 5.710e-8
Identity = 34/96 (35.42%), Postives = 49/96 (51.04%), Query Frame = 1 
Query:   70 ATEGQVIDVPGSLQDIGHRDVDVESH-LTGEQNAVVADADQVISNFYYTFPKGQTQPYGNKSGGQPALNEMTAEMERRFREVFAILGTSFGIDFIE 354
            A +   ++ PG   + G RD D  SH L  + + +       IS  YY F    + PYG    GQ   N +T   ++R RE+F +LG S+GIDF+E
Sbjct:  774 ALDSYALEYPGGYDEQGLRDFDQLSHFLFQDGDELDGTTGSAISRLYYNF--NTSLPYGQDGFGQSLFNAITDAQKQRVREIFEVLGDSWGIDFVE 867
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BLAST of mRNA_H-canaliculatus_M_contigs77716.1.1 vs.
Match: Fibronectin (type III domain protein n=1 Tax=Fuerstiella marisgermanici TaxID=1891926 RepID=A0A1P8WK44_9PLAN)

HSP 1 Score: 53.9 bits (128), Expect = 8.110e-6
Identity = 36/100 (36.00%), Postives = 48/100 (48.00%), Query Frame = 1 
Query:   61 LTSATEGQV--IDVPGSLQDIGHRDVDVESHLTGEQNAVVADADQVISNFYYTFPKGQTQPYGNKSGGQPALNEMTAEMERRFREVFAILGTSFGIDFIE 354
            ++SA E Q    D PG + + GHRD+++E+HL G       D+    S   Y F       YG    GQ  LN +T   ++R REVF    T  GID  E
Sbjct:  450 ISSAIEAQPYPFDYPGGIDEPGHRDIEIETHLNGGP-----DSQAGTSQINYNFQ----DVYGFDPAGQILLNTITEAQKQRAREVFEYYSTVTGIDVQE 540
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs77716.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
tandem-958.050e-1342.05repeat protein n=1 Tax=Roseimaritima sediminicola ... [more]
Uncharacterized6.370e-934.95protein (Fragment) n=1 Tax=Planctomycetaceae bacte... [more]
Dockerin3.070e-836.46type I repeat protein n=1 Tax=Rosistilla ulvae Tax... [more]
Dockerin5.710e-835.42type I repeat protein n=2 Tax=Rosistilla oblonga T... [more]
Fibronectin8.110e-636.00type III domain protein n=1 Tax=Fuerstiella marisg... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs77716contigH-canaliculatus_M_contigs77716:109..483 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog530564.Psta_1933
PFAMsDockerin_1,PPC
Model size375
Max annot lvl203682|Planctomycetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.4e-06
EggNOG OGsCOG3209@1|root,COG3209@2|Bacteria,2IXF1@203682|Planctomycetes
DescriptionBacterial pre-peptidase C-terminal domain
Cds size375
COG categoryM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854114.2824664-CDS-H-canaliculatus_M_contigs77716:108..4831696854114.2824664-CDS-H-canaliculatus_M_contigs77716:108..483Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs77716 109..483 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs77716.1.1prot_H-canaliculatus_M_contigs77716.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs77716 109..483 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs77716.1.1

>prot_H-canaliculatus_M_contigs77716.1.1 ID=prot_H-canaliculatus_M_contigs77716.1.1|Name=mRNA_H-canaliculatus_M_contigs77716.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=125bp
TSIGGGALGASPASFIVSASLTSATEGQVIDVPGSLQDIGHRDVDVESHL
TGEQNAVVADADQVISNFYYTFPKGQTQPYGNKSGGQPALNEMTAEMERR
FREVFAILGTSFGIDFIEVPDAIQP
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mRNA from alignment at H-canaliculatus_M_contigs77716:109..483-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs77716.1.1 ID=mRNA_H-canaliculatus_M_contigs77716.1.1|Name=mRNA_H-canaliculatus_M_contigs77716.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=375bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77716:109..483- (Hapterophycus canaliculatus Oshoro7m male)
ACGTCGATCGGCGGAGGAGCTCTTGGTGCCTCACCAGCTTCCTTCATTGT
GTCCGCCTCGTTGACCAGCGCGACGGAGGGCCAAGTTATCGACGTGCCTG
GCAGCCTCCAGGACATTGGGCACCGTGATGTGGATGTGGAGTCTCATCTA
ACCGGTGAGCAGAACGCCGTCGTTGCTGATGCCGATCAAGTTATCTCCAA
CTTTTATTACACGTTCCCGAAAGGCCAAACGCAGCCTTACGGTAATAAGT
CGGGTGGCCAACCGGCGCTCAACGAAATGACCGCGGAAATGGAACGGCGT
TTCCGTGAAGTGTTTGCGATTCTTGGTACCAGTTTCGGTATCGACTTCAT
TGAAGTCCCCGACGCGATTCAACCA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs77716:109..483-

>mRNA_H-canaliculatus_M_contigs77716.1.1 ID=mRNA_H-canaliculatus_M_contigs77716.1.1|Name=mRNA_H-canaliculatus_M_contigs77716.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=375bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77716:109..483- (Hapterophycus canaliculatus Oshoro7m male)
ACGTCGATCGGCGGAGGAGCTCTTGGTGCCTCACCAGCTTCCTTCATTGT
GTCCGCCTCGTTGACCAGCGCGACGGAGGGCCAAGTTATCGACGTGCCTG
GCAGCCTCCAGGACATTGGGCACCGTGATGTGGATGTGGAGTCTCATCTA
ACCGGTGAGCAGAACGCCGTCGTTGCTGATGCCGATCAAGTTATCTCCAA
CTTTTATTACACGTTCCCGAAAGGCCAAACGCAGCCTTACGGTAATAAGT
CGGGTGGCCAACCGGCGCTCAACGAAATGACCGCGGAAATGGAACGGCGT
TTCCGTGAAGTGTTTGCGATTCTTGGTACCAGTTTCGGTATCGACTTCAT
TGAAGTCCCCGACGCGATTCAACCA
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