mRNA_H-canaliculatus_M_contigs7771.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7771.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7771.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7771.1.1 vs.
Match: ATP-dependent (DNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JR39_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 3.010e-10
Identity = 29/41 (70.73%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:   55 VADELGQEQKRVVDLVLKGKSVFVTGAAGTGKSYLIKKLHQ 177
            + + L +EQ+ V+DLVLKGKSVF TGAAGTGKS+L+KKLHQ
Sbjct:  172 ILEGLCEEQRHVIDLVLKGKSVFFTGAAGTGKSFLLKKLHQ 212
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7771.1.1 vs.
Match: ATP-dependent (DNA helicase PIF1 n=2 Tax=Osmia TaxID=124287 RepID=UPI001EAF6C03)

HSP 1 Score: 54.7 bits (130), Expect = 3.990e-7
Identity = 24/36 (66.67%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   64 ELGQEQKRVVDLVLKGKSVFVTGAAGTGKSYLIKKL 171
            +L +EQKR+VD VL GK+VF TG AGTGKS+L+KK+
Sbjct:  178 QLTEEQKRIVDAVLSGKNVFFTGGAGTGKSFLLKKI 213
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BLAST of mRNA_H-canaliculatus_M_contigs7771.1.1 vs.
Match: ATP-dependent (DNA helicase n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZS53_9MYCE)

HSP 1 Score: 53.5 bits (127), Expect = 1.020e-6
Identity = 21/42 (50.00%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:   55 VADELGQEQKRVVDLVLKGKSVFVTGAAGTGKSYLIKKLHQV 180
            ++ +L ++QK+++DLVL+G S+F TG+AGTGKS+L+K++ +V
Sbjct:  301 ISKQLSEDQKQILDLVLQGNSIFFTGSAGTGKSFLLKEMVRV 342
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BLAST of mRNA_H-canaliculatus_M_contigs7771.1.1 vs.
Match: ATP-dependent (DNA helicase PIF1 n=7 Tax=Serpentes TaxID=8570 RepID=A0A670XRG4_PSETE)

HSP 1 Score: 53.1 bits (126), Expect = 1.400e-6
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:   67 LGQEQKRVVDLVLKGKSVFVTGAAGTGKSYLIKKL 171
            L QEQ RV++ VL GK+VF TG+AGTGKSYL+KK+
Sbjct:  192 LSQEQSRVLNAVLSGKNVFFTGSAGTGKSYLLKKI 226
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BLAST of mRNA_H-canaliculatus_M_contigs7771.1.1 vs.
Match: ATP-dependent (DNA helicase PIF1 n=1 Tax=Onthophagus taurus TaxID=166361 RepID=UPI000C20DC40)

HSP 1 Score: 53.1 bits (126), Expect = 1.400e-6
Identity = 23/37 (62.16%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:   61 DELGQEQKRVVDLVLKGKSVFVTGAAGTGKSYLIKKL 171
            + L QEQKR++D+ L G +VF TG+AGTGKSYL+KK+
Sbjct:  186 EALNQEQKRILDVCLSGVNVFFTGSAGTGKSYLLKKI 222
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BLAST of mRNA_H-canaliculatus_M_contigs7771.1.1 vs.
Match: ATP-dependent (DNA helicase PIF1 n=7 Tax=Colubroidea TaxID=34989 RepID=A0A6P9BSM5_PANGU)

HSP 1 Score: 53.1 bits (126), Expect = 1.400e-6
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:   67 LGQEQKRVVDLVLKGKSVFVTGAAGTGKSYLIKKL 171
            L QEQ RV++ VL GK+VF TG+AGTGKSYL+KK+
Sbjct:  207 LSQEQSRVLNAVLSGKNVFFTGSAGTGKSYLLKKI 241
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7771.1.1 vs.
Match: ATP-dependent (DNA helicase n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q55FJ4_DICDI)

HSP 1 Score: 53.1 bits (126), Expect = 1.410e-6
Identity = 24/55 (43.64%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:   16 RLYLRRLCFVHAHVADELGQEQKRVVDLVLKGKSVFVTGAAGTGKSYLIKKLHQV 180
            ++ ++ L F    V++ L QEQ+ V++LV+ G+++F TG+AGTGKSYL+K++ +V
Sbjct:  493 KIEIKGLPFSQIKVSENLSQEQRDVLNLVVGGENIFFTGSAGTGKSYLLKEIVRV 547
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BLAST of mRNA_H-canaliculatus_M_contigs7771.1.1 vs.
Match: ATP-dependent (DNA helicase (Fragment) n=1 Tax=Ophiophagus hannah TaxID=8665 RepID=V8PHK8_OPHHA)

HSP 1 Score: 53.1 bits (126), Expect = 1.410e-6
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:   67 LGQEQKRVVDLVLKGKSVFVTGAAGTGKSYLIKKL 171
            L QEQ RV++ VL GK+VF TG+AGTGKSYL+KK+
Sbjct:  532 LSQEQSRVLNAVLSGKNVFFTGSAGTGKSYLLKKI 566
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7771.1.1 vs.
Match: ATP-dependent (DNA helicase PIF1 n=1 Tax=Megachile rotundata TaxID=143995 RepID=UPI000258E8D1)

HSP 1 Score: 52.8 bits (125), Expect = 1.910e-6
Identity = 22/37 (59.46%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:   61 DELGQEQKRVVDLVLKGKSVFVTGAAGTGKSYLIKKL 171
            ++L +EQ+R++D VL GK+VF TG AGTGKS+L+KK+
Sbjct:  176 EQLTEEQQRILDAVLSGKNVFFTGGAGTGKSFLLKKI 212
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7771.1.1 vs.
Match: ATP-dependent (DNA helicase PIF1 n=2 Tax=Opiinae TaxID=68883 RepID=UPI0005ABD807)

HSP 1 Score: 52.8 bits (125), Expect = 1.910e-6
Identity = 24/38 (63.16%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:   58 ADELGQEQKRVVDLVLKGKSVFVTGAAGTGKSYLIKKL 171
            A EL  EQK V+D VLKGK++F TG+AGTGKS+L+K++
Sbjct:  197 AVELTDEQKGVLDAVLKGKNIFFTGSAGTGKSFLLKRI 234
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7771.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
ATP-dependent3.010e-1070.73DNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
ATP-dependent3.990e-766.67DNA helicase PIF1 n=2 Tax=Osmia TaxID=124287 RepID... [more]
ATP-dependent1.020e-650.00DNA helicase n=1 Tax=Tieghemostelium lacteum TaxID... [more]
ATP-dependent1.400e-668.57DNA helicase PIF1 n=7 Tax=Serpentes TaxID=8570 Rep... [more]
ATP-dependent1.400e-662.16DNA helicase PIF1 n=1 Tax=Onthophagus taurus TaxID... [more]
ATP-dependent1.400e-668.57DNA helicase PIF1 n=7 Tax=Colubroidea TaxID=34989 ... [more]
ATP-dependent1.410e-643.64DNA helicase n=1 Tax=Dictyostelium discoideum TaxI... [more]
ATP-dependent1.410e-668.57DNA helicase (Fragment) n=1 Tax=Ophiophagus hannah... [more]
ATP-dependent1.910e-659.46DNA helicase PIF1 n=1 Tax=Megachile rotundata TaxI... [more]
ATP-dependent1.910e-663.16DNA helicase PIF1 n=2 Tax=Opiinae TaxID=68883 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7771contigH-canaliculatus_M_contigs7771:729..914 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G380
PFAMsPIF1
Model size186
Max annot lvl2759|Eukaryota
KEGG koko:K15255
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.22e-10
EggNOG OGsCOG0507@1|root,KOG0987@2759|Eukaryota
EC3.6.4.12
DescriptionG-quadruplex DNA unwinding
Cds size186
COG categoryL
BRITEko00000,ko01000,ko03029,ko03032
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854114.2512388-CDS-H-canaliculatus_M_contigs7771:728..9141696854114.2512388-CDS-H-canaliculatus_M_contigs7771:728..914Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7771 729..914 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7771.1.1prot_H-canaliculatus_M_contigs7771.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7771 729..914 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7771.1.1

>prot_H-canaliculatus_M_contigs7771.1.1 ID=prot_H-canaliculatus_M_contigs7771.1.1|Name=mRNA_H-canaliculatus_M_contigs7771.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=62bp
MHRDARLYLRRLCFVHAHVADELGQEQKRVVDLVLKGKSVFVTGAAGTGK
SYLIKKLHQVRH
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mRNA from alignment at H-canaliculatus_M_contigs7771:729..914-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7771.1.1 ID=mRNA_H-canaliculatus_M_contigs7771.1.1|Name=mRNA_H-canaliculatus_M_contigs7771.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=186bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7771:729..914- (Hapterophycus canaliculatus Oshoro7m male)
ATGCACCGAGACGCCCGTCTTTACTTGCGCAGACTATGCTTCGTACATGC
GCATGTAGCAGATGAGCTCGGGCAAGAGCAGAAGCGCGTGGTTGACCTTG
TGTTGAAGGGCAAATCGGTCTTCGTTACCGGAGCAGCAGGAACGGGCAAG
AGTTATCTCATCAAGAAGCTTCACCAGGTACGCCAC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7771:729..914-

>mRNA_H-canaliculatus_M_contigs7771.1.1 ID=mRNA_H-canaliculatus_M_contigs7771.1.1|Name=mRNA_H-canaliculatus_M_contigs7771.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=186bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7771:729..914- (Hapterophycus canaliculatus Oshoro7m male)
ATGCACCGAGACGCCCGTCTTTACTTGCGCAGACTATGCTTCGTACATGC
GCATGTAGCAGATGAGCTCGGGCAAGAGCAGAAGCGCGTGGTTGACCTTG
TGTTGAAGGGCAAATCGGTCTTCGTTACCGGAGCAGCAGGAACGGGCAAG
AGTTATCTCATCAAGAAGCTTCACCAGGTACGCCAC
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