mRNA_H-canaliculatus_M_contigs7768.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-canaliculatus_M_contigs7768.1.1
Unique Name	mRNA_H-canaliculatus_M_contigs7768.1.1
Type	mRNA
Organism	Hapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)

Homology

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BLAST of mRNA_H-canaliculatus_M_contigs7768.1.1 vs.
Match: Protein (kinase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK56_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 1.560e-27
Identity = 51/71 (71.83%), Postives = 57/71 (80.28%), Query Frame = 1

Query:    1 ADVWSAGVILFTMLAGHPPMEKATSTDWWFRALHFERQDLFWASHEKMAPRFHDDAKDLISAMLTVDPSKR 213
            ADVWS+GVILFTMLAGHPPMEKA  +DWWFRAL   RQDLFW SH+  AP   +DAK LI AMLTV+P+ R
Sbjct:  432 ADVWSSGVILFTMLAGHPPMEKANESDWWFRALKLSRQDLFWQSHQNTAPPLPEDAKHLIQAMLTVNPAHR 502

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BLAST of mRNA_H-canaliculatus_M_contigs7768.1.1 vs.
Match: Protein (kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU86_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 2.860e-27
Identity = 51/71 (71.83%), Postives = 57/71 (80.28%), Query Frame = 1

Query:    1 ADVWSAGVILFTMLAGHPPMEKATSTDWWFRALHFERQDLFWASHEKMAPRFHDDAKDLISAMLTVDPSKR 213
            ADVWS+GVILFTMLAGHPPMEKA  +DWWFRAL   RQDLFW SH+  AP   +DAK LI AMLTV+P+ R
Sbjct:  356 ADVWSSGVILFTMLAGHPPMEKANESDWWFRALKLGRQDLFWQSHQNTAPLLPEDAKHLIQAMLTVNPAHR 426

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BLAST of mRNA_H-canaliculatus_M_contigs7768.1.1 vs.
Match: Serine/threonine (protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYP7_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.230e-18
Identity = 38/71 (53.52%), Postives = 51/71 (71.83%), Query Frame = 1

Query:    1 ADVWSAGVILFTMLAGHPPMEKATSTDWWFRALHFERQDLFWASHEKMAPRFHDDAKDLISAMLTVDPSKR 213
            ADVWSAGV+LF M+AG+PP E+A+STDWW+ A    R D FWA+H +  P F   A+DL++ +   DP+KR
Sbjct:  182 ADVWSAGVVLFIMIAGNPPFEEASSTDWWYLACRCGRYDRFWAAHLRTCPDFPTLAQDLLNKIFVEDPTKR 252

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BLAST of mRNA_H-canaliculatus_M_contigs7768.1.1 vs.
Match: CBLinteracting (serine/threonineprotein kinase putati n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WX20_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 5.550e-17
Identity = 37/71 (52.11%), Postives = 48/71 (67.61%), Query Frame = 1

Query:    1 ADVWSAGVILFTMLAGHPPMEKATSTDWWFRALHFERQDLFWASHEKMAPRFHDDAKDLISAMLTVDPSKR 213
            ADVWSAGV+LF MLA  PP + AT  DWWFR++  +R D FW +H + A  F ++AKDL+S +   DP  R
Sbjct:  232 ADVWSAGVVLFIMLAAFPPFQTATQQDWWFRSIAADRYDAFWDAHARYA-NFSEEAKDLLSRVFKSDPKMR 301

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs7768.1.1 vs.
Match: Protein (kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF47_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 6.670e-17
Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = 1

Query:    1 ADVWSAGVILFTMLAGHPPMEKATSTDWWFRALHFERQDLFWASHEKMAPRFHDDAKDLISAMLTVDPSKR 213
            AD+WSAGV+LF MLAG+PP + A STDWWFRA+   R D FWA+H +  P F   A+  ++ +   DP +R
Sbjct:   74 ADLWSAGVVLFIMLAGNPPFQMAVSTDWWFRAVSSGRHDRFWAAHLRGCPDFPPLAQAFLNRIFVADPLQR 144

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BLAST of mRNA_H-canaliculatus_M_contigs7768.1.1 vs.
Match: Serine/threonine (protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6D0_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 1.010e-16
Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = 1

Query:    1 ADVWSAGVILFTMLAGHPPMEKATSTDWWFRALHFERQDLFWASHEKMAPRFHDDAKDLISAMLTVDPSKR 213
            AD+WSAGV+LF MLAG+PP + A STDWWFRA+   R D FWA+H +  P F   A+  ++ +   DP +R
Sbjct:  206 ADLWSAGVVLFIMLAGNPPFQMAVSTDWWFRAVSSGRHDRFWAAHLRGCPDFPPLAQAFLNRIFVADPLQR 276

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BLAST of mRNA_H-canaliculatus_M_contigs7768.1.1 vs.
Match: Protein (kinase domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y2G7_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 2.230e-16
Identity = 39/71 (54.93%), Postives = 47/71 (66.20%), Query Frame = 1

Query:    1 ADVWSAGVILFTMLAGHPPMEKATSTDWWFRALHFERQDLFWASHEKMAPRFHDDAKDLISAMLTVDPSKR 213
            ADVWSAGV+LF MLAG PP + AT  DWWFRA    + D FWA+H + A  F   A DL+S + TV P +R
Sbjct:  145 ADVWSAGVVLFIMLAGFPPFQIATRQDWWFRACAARQYDAFWAAHARSAA-FSAGAMDLMSRIFTVTPQER 214

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BLAST of mRNA_H-canaliculatus_M_contigs7768.1.1 vs.
Match: Protein (kinase domain-containing protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GCN3_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 9.110e-16
Identity = 36/71 (50.70%), Postives = 47/71 (66.20%), Query Frame = 1

Query:    1 ADVWSAGVILFTMLAGHPPMEKATSTDWWFRALHFERQDLFWASHEKMAPRFHDDAKDLISAMLTVDPSKR 213
            ADVWSAGV+LF MLA  PP + AT  DWW+R++  ER D FW +H + A  F ++AK L+S +   DP  R
Sbjct:  248 ADVWSAGVVLFIMLAAFPPFQTATQQDWWYRSIAAERYDSFWNAHARHA-EFSEEAKHLLSRIFKSDPKMR 317

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BLAST of mRNA_H-canaliculatus_M_contigs7768.1.1 vs.
Match: Protein (kinase domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VRB2_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 4.320e-15
Identity = 36/71 (50.70%), Postives = 47/71 (66.20%), Query Frame = 1

Query:    1 ADVWSAGVILFTMLAGHPPMEKATSTDWWFRALHFERQDLFWASHEKMAPRFHDDAKDLISAMLTVDPSKR 213
            ADVWSAGV+LF MLAG PP + ATS DWWFRA   ++ + FWA+H + A  F   A  L++ +  V P +R
Sbjct:  225 ADVWSAGVVLFIMLAGFPPFQIATSQDWWFRACAAKQHETFWAAHARSAT-FSSGAMSLMTRIFNVKPQER 294

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs7768.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UW55_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 5.800e-15
Identity = 29/71 (40.85%), Postives = 42/71 (59.15%), Query Frame = 1

Query:    1 ADVWSAGVILFTMLAGHPPMEKATSTDWWFRALHFERQDLFWASHEKMAPRFHDDAKDLISAMLTVDPSKR 213
            AD+WSAGV+LF M+ GHPP + A   DWWF  +   R + FW +H +  P F  +A+  ++ + T  P  R
Sbjct:  204 ADIWSAGVVLFIMMTGHPPFQIALPQDWWFNEIQHRRHERFWQAHLRTTPNFPPEAQSFLNTIFTASPDDR 274

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_M_contigs7768.1.1 vs.

BLAST of mRNA_H-canaliculatus_M_contigs7768.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Protein	1.560e-27	71.83	kinase domain-containing protein (Fragment) n=1 Ta...	[more]
Protein	2.860e-27	71.83	kinase domain-containing protein n=1 Tax=Ectocarpu...	[more]
Serine/threonine	1.230e-18	53.52	protein kinase n=1 Tax=Tribonema minus TaxID=30337...	[more]
CBLinteracting	5.550e-17	52.11	serine/threonineprotein kinase putati n=1 Tax=Albu...	[more]
Protein	6.670e-17	50.70	kinase domain-containing protein n=1 Tax=Ectocarpu...	[more]
Serine/threonine	1.010e-16	50.70	protein kinase n=1 Tax=Ectocarpus siliculosus TaxI...	[more]
Protein	2.230e-16	54.93	kinase domain-containing protein n=1 Tax=Pythium b...	[more]
Protein	9.110e-16	50.70	kinase domain-containing protein n=2 Tax=Albugo ca...	[more]
Protein	4.320e-15	50.70	kinase domain-containing protein n=1 Tax=Peronospo...	[more]
Hypothetical	5.800e-15	40.85	protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_M_contigs7768	contig	H-canaliculatus_M_contigs7768:149..938 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90	2022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male	2022-07-08

Properties


Property Name	Value
Stop	1
Start	0
Seed ortholog	2880.D7FU86
PFAMs	Pkinase
Model size	216
Max annot lvl	2759\|Eukaryota
Hectar predicted targeting category	other localisation
Exons	2
Evalue	4.7e-28
EggNOG OGs	KOG0588@1\|root,KOG0588@2759\|Eukaryota
Description	protein serine/threonine kinase activity
Cds size	216
COG category	T

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854113.9467633-CDS-H-canaliculatus_M_contigs7768:148..250	1696854113.9467633-CDS-H-canaliculatus_M_contigs7768:148..250	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs7768 149..250 +
1696854113.9622502-CDS-H-canaliculatus_M_contigs7768:824..938	1696854113.9622502-CDS-H-canaliculatus_M_contigs7768:824..938	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs7768 825..938 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_M_contigs7768.1.1	prot_H-canaliculatus_M_contigs7768.1.1	Hapterophycus canaliculatus Oshoro7m male	polypeptide	H-canaliculatus_M_contigs7768 149..938 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-canaliculatus_M_contigs7768:149..938+
coding sequence from alignment at H-canaliculatus_M_contigs7768:149..938+

protein sequence of mRNA_H-canaliculatus_M_contigs7768.1.1

>prot_H-canaliculatus_M_contigs7768.1.1 ID=prot_H-canaliculatus_M_contigs7768.1.1|Name=mRNA_H-canaliculatus_M_contigs7768.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=72bp
ADVWSAGVILFTMLAGHPPMEKATSTDWWFRALHFERQDLFWASHEKMAP
RFHDDAKDLISAMLTVDPSKR*

mRNA from alignment at H-canaliculatus_M_contigs7768:149..938+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-canaliculatus_M_contigs7768.1.1 ID=mRNA_H-canaliculatus_M_contigs7768.1.1|Name=mRNA_H-canaliculatus_M_contigs7768.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=790bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7768:149..938+ (Hapterophycus canaliculatus Oshoro7m male)
GCGGACGTATGGAGCGCGGGCGTGATCCTGTTCACGATGCTCGCCGGGCA
CCCTCCCATGGAGAAGGCGACGTCGACAGACTGGTGGTTCCGAGCCCTTC
ACGTACGTGCATCGCCAAATGATGCCTTTCGAGGGGGGGGGGGAGAGGGG
TAGGCCCATTCGGTCCCTGTGCGTTGATGGTTTGACCGTTGAACACGCAA
GAGGGTGGGAATGCAGCCAGAGGAATGAGGTCGGCAAAGTTACCGTTTGT
TGTGCCTTAAGGCCTCGCTATTTATCTTTCTTTGTGGCATCCTTGTGACT
CGGCTATAGTCGGCGAGGTCGCTTCCTCACCAGGAAGAAGGGAGGGAGAA
ACAAAAAAAAACGGCGTTCCCTGGCGTGAACCAAGGACTCCCGTGCTTCT
CCTGGTGATCCGAGAAAACCAACGCGCTCCATTTTCTCGCACTCTTCTTA
GGAACAAGAGTCGACAACTCCAAAGGGAACACGCACTTTTTTTGCTCCTT
CGCCTCCATGTTCATTTCCGTTGTTCTTGTACCTATGATTGCCCAACCTC
CGTTATCTTACCCTCCTCTTTGTCCCGTGTCTCCACATCTCTTCCCAGAA
ACCGCCCACATCTTCTTACATACCTGGTATGTTTTGTTCGTGCCCGTCGT
TGTCGCCTCTTTTCTTTTTTTTGCAGTTCGAGCGGCAGGATCTGTTCTGG
GCGAGCCACGAAAAGATGGCCCCGCGTTTCCACGATGACGCCAAGGACCT
CATCTCTGCCATGCTCACCGTCGACCCTTCGAAACGGTAA

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7768:149..938+

>mRNA_H-canaliculatus_M_contigs7768.1.1 ID=mRNA_H-canaliculatus_M_contigs7768.1.1|Name=mRNA_H-canaliculatus_M_contigs7768.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=216bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7768:149..938+ (Hapterophycus canaliculatus Oshoro7m male)
GCGGACGTATGGAGCGCGGGCGTGATCCTGTTCACGATGCTCGCCGGGCA
CCCTCCCATGGAGAAGGCGACGTCGACAGACTGGTGGTTCCGAGCCCTTC
ACTTCGAGCGGCAGGATCTGTTCTGGGCGAGCCACGAAAAGATGGCCCCG
CGTTTCCACGATGACGCCAAGGACCTCATCTCTGCCATGCTCACCGTCGA
CCCTTCGAAACGGTAA