mRNA_H-canaliculatus_M_contigs7765.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7765.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7765.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7765.1.1 vs.
Match: Reverse (transcriptase domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H656_PHYRM)

HSP 1 Score: 55.8 bits (133), Expect = 1.110e-7
Identity = 27/50 (54.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    7 SERLRGIVGRRFSGFRRALRGDPPARVEPMRVQLKPGASAVKAKPRRYEP 156
            S +LRGI+  R   FR     DPP RV PM+V+LKPGA+ ++A+PRRY P
Sbjct:  629 SAKLRGILQMRADSFRLEFGHDPPVRVAPMQVRLKPGATPIRAQPRRYSP 678
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BLAST of mRNA_H-canaliculatus_M_contigs7765.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H4S7_PHYRM)

HSP 1 Score: 55.8 bits (133), Expect = 1.120e-7
Identity = 27/50 (54.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    7 SERLRGIVGRRFSGFRRALRGDPPARVEPMRVQLKPGASAVKAKPRRYEP 156
            S +LRGI+  R   FR     DPP RV PM+V+LKPGA+ ++A+PRRY P
Sbjct:  631 SAKLRGILQMRADSFRLEFGHDPPVRVAPMQVRLKPGATPIRAQPRRYSP 680
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BLAST of mRNA_H-canaliculatus_M_contigs7765.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A9U6_PHYSP)

HSP 1 Score: 54.7 bits (130), Expect = 1.860e-7
Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:   13 RLRGIVGRRFSGFRRALRGDPPARVEPMRVQLKPGASAVKAKPRRYEP 156
            +LRGI+  R   FR     DPP RV PM+V+LKPGA+ ++A+PRRY P
Sbjct:  152 KLRGILQMRADSFRLEFGHDPPVRVAPMQVRLKPGATPIRAQPRRYSP 199
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BLAST of mRNA_H-canaliculatus_M_contigs7765.1.1 vs.
Match: Reverse (transcriptase domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3XS26_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 4.770e-6
Identity = 27/54 (50.00%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:    1 SQSERLRGIVGRRFSGFRRALRGDPPARVEPMRVQLKPGASAVKAKPRRYEPVK 162
            ++ +RLR I+   F G+R AL  DPPARV P+R++LKP A   K K R+Y P K
Sbjct:  479 TEEDRLRNILAS-FKGWRLALGDDPPARVPPLRIRLKPDAKPFKCKVRQYSPEK 531
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BLAST of mRNA_H-canaliculatus_M_contigs7765.1.1 vs.
Match: Reverse (transcriptase domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H5Q5_PHYRM)

HSP 1 Score: 50.8 bits (120), Expect = 6.500e-6
Identity = 26/54 (48.15%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:    1 SQSERLRGIVGRRFSGFRRALRGDPPARVEPMRVQLKPGASAVKAKPRRYEPVK 162
            ++ ERLR I+   F+G+R  L  DPPA+V P++++LKPGA   K K R+Y P K
Sbjct:  155 AEEERLRAILFS-FNGWRLVLGDDPPAKVPPLKIRLKPGAKPFKCKARQYSPEK 207
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BLAST of mRNA_H-canaliculatus_M_contigs7765.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4AYF2_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 6.540e-6
Identity = 27/54 (50.00%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:    1 SQSERLRGIVGRRFSGFRRALRGDPPARVEPMRVQLKPGASAVKAKPRRYEPVK 162
            ++ +RLR I    F G+R AL  DPPARV P+R++LKP A   K K R+Y P K
Sbjct:   31 AEEDRLRNIFTS-FKGWRLALGDDPPARVPPLRIRLKPDAKPFKCKVRQYSPEK 83
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7765.1.1 vs.
Match: Reverse (transcriptase domain-containing protein (Fragment) n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GQK2_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 8.880e-6
Identity = 27/54 (50.00%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:    1 SQSERLRGIVGRRFSGFRRALRGDPPARVEPMRVQLKPGASAVKAKPRRYEPVK 162
            ++ +RLR I+   F G+R AL  DPPARV P+R++LKP A   K K R+Y P K
Sbjct:  284 TEEDRLRNILTS-FKGWRLALGDDPPARVPPLRIRLKPDAKPFKCKVRQYSPEK 336
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7765.1.1 vs.
Match: Reverse (transcriptase domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3SZ70_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 8.950e-6
Identity = 27/54 (50.00%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:    1 SQSERLRGIVGRRFSGFRRALRGDPPARVEPMRVQLKPGASAVKAKPRRYEPVK 162
            ++ +RLR I+   F G+R AL  DPPARV P+R++LKP A   K K R+Y P K
Sbjct:  448 AEEDRLRNILTS-FKGWRLALGDDPPARVPPLRIRLKPDAKPFKCKVRQYSPEK 500
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7765.1.1 vs.
Match: Uncharacterized (protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3XJV5_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 8.980e-6
Identity = 27/54 (50.00%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:    1 SQSERLRGIVGRRFSGFRRALRGDPPARVEPMRVQLKPGASAVKAKPRRYEPVK 162
            ++ +RLR I+   F G+R AL  DPPARV P+R++LKP A   K K R+Y P K
Sbjct:  448 AEEDRLRNILTS-FKGWRLALGDDPPARVPPLRIRLKPDAKPFKCKVRQYSPEK 500
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7765.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FR83_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 4.310e-5
Identity = 22/53 (41.51%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    1 SQSERLRGIVGRRFSGFRRALRGDPPARVEPMRVQLKPGASAVKAKPRRYEPV 159
            +++ RL  ++ +    FR  L  DPP +VEP++V++KPGA+ VK   RRY P+
Sbjct:  571 AEATRLHDLLAKHIDVFRENLGDDPPVKVEPLKVRIKPGATLVKCGMRRYPPL 623
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7765.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
Reverse1.110e-754.00transcriptase domain-containing protein n=1 Tax=Ph... [more]
Uncharacterized1.120e-754.00protein n=1 Tax=Phytophthora ramorum TaxID=164328 ... [more]
Uncharacterized1.860e-754.17protein (Fragment) n=1 Tax=Phytophthora sojae (str... [more]
Reverse4.770e-650.00transcriptase domain-containing protein n=3 Tax=Ph... [more]
Reverse6.500e-648.15transcriptase domain-containing protein n=1 Tax=Ph... [more]
Uncharacterized6.540e-650.00protein (Fragment) n=1 Tax=Phytophthora rubi TaxID... [more]
Reverse8.880e-650.00transcriptase domain-containing protein (Fragment)... [more]
Reverse8.950e-650.00transcriptase domain-containing protein n=3 Tax=Ph... [more]
Uncharacterized8.980e-650.00protein n=4 Tax=Phytophthora fragariae TaxID=53985... [more]
Uncharacterized4.310e-541.51protein n=1 Tax=Aphanomyces astaci TaxID=112090 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7765contigH-canaliculatus_M_contigs7765:119..280 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog164328.Phyra85588
PFAMsRVT_1,rve
Model size162
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.83e-08
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QEWS@4776|Peronosporales
Descriptiontransposition, RNA-mediated
Cds size162
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854113.74882-CDS-H-canaliculatus_M_contigs7765:118..2801696854113.74882-CDS-H-canaliculatus_M_contigs7765:118..280Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7765 119..280 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7765.1.1prot_H-canaliculatus_M_contigs7765.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7765 119..280 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7765.1.1

>prot_H-canaliculatus_M_contigs7765.1.1 ID=prot_H-canaliculatus_M_contigs7765.1.1|Name=mRNA_H-canaliculatus_M_contigs7765.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=54bp
SQSERLRGIVGRRFSGFRRALRGDPPARVEPMRVQLKPGASAVKAKPRRY
EPVK
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mRNA from alignment at H-canaliculatus_M_contigs7765:119..280-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7765.1.1 ID=mRNA_H-canaliculatus_M_contigs7765.1.1|Name=mRNA_H-canaliculatus_M_contigs7765.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=162bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7765:119..280- (Hapterophycus canaliculatus Oshoro7m male)
AGTCAATCGGAGCGGTTGCGCGGCATTGTGGGTCGCCGTTTCAGCGGGTT
TCGTCGTGCGCTGCGGGGTGATCCTCCGGCGCGTGTGGAGCCCATGCGGG
TTCAGCTAAAGCCTGGGGCTTCCGCGGTCAAGGCGAAGCCGCGGCGGTAC
GAACCGGTGAAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7765:119..280-

>mRNA_H-canaliculatus_M_contigs7765.1.1 ID=mRNA_H-canaliculatus_M_contigs7765.1.1|Name=mRNA_H-canaliculatus_M_contigs7765.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=162bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7765:119..280- (Hapterophycus canaliculatus Oshoro7m male)
AGTCAATCGGAGCGGTTGCGCGGCATTGTGGGTCGCCGTTTCAGCGGGTT
TCGTCGTGCGCTGCGGGGTGATCCTCCGGCGCGTGTGGAGCCCATGCGGG
TTCAGCTAAAGCCTGGGGCTTCCGCGGTCAAGGCGAAGCCGCGGCGGTAC
GAACCGGTGAAG
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