mRNA_H-canaliculatus_M_contigs77620.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs77620.1.1
Unique NamemRNA_H-canaliculatus_M_contigs77620.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs77620.1.1 vs.
Match: G-patch_2 (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7L2_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 1.330e-15
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:  352 AWLRANIRVRVVHKSYAGGRAYLGKGRVVDVPRIGQATVRMD 477
            AWLRANIRVRV+HKSY GGRAYLGKGRVVDVPR GQATVRMD
Sbjct:  546 AWLRANIRVRVIHKSYGGGRAYLGKGRVVDVPRAGQATVRMD 587
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs77620.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
G-patch_21.330e-1592.86domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs77620contigH-canaliculatus_M_contigs77620:29..505 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G7L2
Preferred nameGPKOW
PFAMsG-patch_2,KOW
Model size477
Max annot lvl2759|Eukaryota
KEGG rclassRC00010
KEGG koko:K10798,ko:K13101,ko:K13566
KEGG ReactionR00269,R00348
KEGG Pathwayko00250,ko03410,ko04210,ko04212,ko04214,ko04217,map00250,map03410,map04210,map04212,map04214,map04217
KEGG ModuleM00296
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0002218,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008380,GO:0009605,GO:0009607,GO:0009617,GO:0009870,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0023052,GO:0031347,GO:0031349,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045088,GO:0045089,GO:0046483,GO:0048518,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051704,GO:0051707,GO:0051716,GO:0065007,GO:0070013,GO:0071704,GO:0080134,GO:0090304,GO:0097159,GO:0098542,GO:1901360,GO:1901363,GO:1990904
Exons1
Evalue2.18e-16
EggNOG OGsKOG4315@1|root,KOG4315@2759|Eukaryota
EC2.4.2.30,3.5.1.3
Descriptiondefense response signaling pathway, resistance gene-dependent
Cds size477
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03036,ko03041,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854113.6247702-CDS-H-canaliculatus_M_contigs77620:28..5051696854113.6247702-CDS-H-canaliculatus_M_contigs77620:28..505Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs77620 29..505 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs77620.1.1prot_H-canaliculatus_M_contigs77620.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs77620 29..505 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs77620.1.1

>prot_H-canaliculatus_M_contigs77620.1.1 ID=prot_H-canaliculatus_M_contigs77620.1.1|Name=mRNA_H-canaliculatus_M_contigs77620.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=159bp
REQGRSNSGERRSSSPPDRHRRYGDERGDRDTGRRRQADRGGEDERMGRR
GEGRKGKTPPDDDADRKRRRRDTAGDRDGGTSFTSGSGRSNKNDNDRRHR
SDSREPQPTPAPEPPAGAWLRANIRVRVVHKSYAGGRAYLGKGRVVDVPR
IGQATVRMD
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mRNA from alignment at H-canaliculatus_M_contigs77620:29..505+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs77620.1.1 ID=mRNA_H-canaliculatus_M_contigs77620.1.1|Name=mRNA_H-canaliculatus_M_contigs77620.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=477bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77620:29..505+ (Hapterophycus canaliculatus Oshoro7m male)
CGCGAGCAGGGAAGGAGCAACAGCGGCGAGCGGCGATCATCCTCGCCACC
CGATCGCCACCGCCGCTACGGCGACGAGCGAGGGGACCGGGACACCGGCC
GGCGACGGCAAGCGGACCGCGGGGGCGAGGACGAGCGGATGGGAAGGAGG
GGCGAGGGACGCAAAGGCAAGACCCCCCCAGATGACGATGCTGACCGGAA
GCGCCGACGTCGTGACACCGCAGGGGACAGAGACGGGGGCACCAGCTTTA
CCAGCGGCAGCGGCAGAAGCAACAAGAACGACAACGATCGTCGCCATCGC
TCCGACTCGCGTGAACCGCAGCCGACGCCGGCGCCCGAGCCACCGGCGGG
GGCCTGGCTCCGCGCGAACATCCGCGTTCGCGTCGTCCACAAGTCATACG
CCGGGGGGCGTGCTTACCTGGGGAAGGGGAGGGTGGTGGACGTACCTCGC
ATCGGACAGGCGACTGTGCGGATGGAC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs77620:29..505+

>mRNA_H-canaliculatus_M_contigs77620.1.1 ID=mRNA_H-canaliculatus_M_contigs77620.1.1|Name=mRNA_H-canaliculatus_M_contigs77620.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=477bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77620:29..505+ (Hapterophycus canaliculatus Oshoro7m male)
CGCGAGCAGGGAAGGAGCAACAGCGGCGAGCGGCGATCATCCTCGCCACC
CGATCGCCACCGCCGCTACGGCGACGAGCGAGGGGACCGGGACACCGGCC
GGCGACGGCAAGCGGACCGCGGGGGCGAGGACGAGCGGATGGGAAGGAGG
GGCGAGGGACGCAAAGGCAAGACCCCCCCAGATGACGATGCTGACCGGAA
GCGCCGACGTCGTGACACCGCAGGGGACAGAGACGGGGGCACCAGCTTTA
CCAGCGGCAGCGGCAGAAGCAACAAGAACGACAACGATCGTCGCCATCGC
TCCGACTCGCGTGAACCGCAGCCGACGCCGGCGCCCGAGCCACCGGCGGG
GGCCTGGCTCCGCGCGAACATCCGCGTTCGCGTCGTCCACAAGTCATACG
CCGGGGGGCGTGCTTACCTGGGGAAGGGGAGGGTGGTGGACGTACCTCGC
ATCGGACAGGCGACTGTGCGGATGGAC
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