mRNA_H-canaliculatus_M_contigs77593.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs77593.1.1
Unique NamemRNA_H-canaliculatus_M_contigs77593.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs77593.1.1 vs.
Match: Phage (integrase n=3 Tax=Roseobacteraceae TaxID=2854170 RepID=B7RNF4_ROSS0)

HSP 1 Score: 276 bits (706), Expect = 3.810e-91
Identity = 130/168 (77.38%), Postives = 149/168 (88.69%), Query Frame = 1
Query:    1 LSKIQSANGWENPCRAEIVRATMRGIRRVKGTAQDQAKPLLREDLFLVLDTLGEDTRAIRDRALLLIGWAGGFRSSELTGLDVTDVEEVREGLVLHLRRSKTDQTGQGRKLGIPLGRTRHCPVAALTAWLDTLNQPDSKIFRPVDRHGNLRDEMLRADAVSTILRGRL 504
            LSK   ANGW NPCR E+VRAT+RGI+RVKGTAQ QA+PLLREDLFLVLD L +D R++RDRALLL+GWAGGFRSSELTGLD++D+EEVREGL+LHLR+SKTDQTGQGRK+GIPLGRTRHCPVAAL+ W   L +PD ++FRPVDRHGN+R  MLR DAVSTILR RL
Sbjct:   67 LSKAHEANGWPNPCRKELVRATLRGIKRVKGTAQAQARPLLREDLFLVLDALDDDPRSLRDRALLLVGWAGGFRSSELTGLDLSDIEEVREGLILHLRKSKTDQTGQGRKIGIPLGRTRHCPVAALSGWRQALPEPDGRVFRPVDRHGNVRGPMLRPDAVSTILRDRL 234          
BLAST of mRNA_H-canaliculatus_M_contigs77593.1.1 vs.
Match: Phage (integrase n=1 Tax=Roseobacter sp. CCS2 TaxID=391593 RepID=A4EDW3_9RHOB)

HSP 1 Score: 276 bits (707), Expect = 5.820e-91
Identity = 133/169 (78.70%), Postives = 148/169 (87.57%), Query Frame = 1
Query:    1 LSKIQSANGWENPCRAEIVRATMRGIRRVKGTAQDQAKPLLREDLFLVLDTLGEDTRAIRDRALLLIGWAGGFRSSELTGLDVTDVEEVREGLVLHLRRSKTDQTGQGRKLGIPLGRTRHCPVAALTAWLDTLNQPDSKIFRPVDRHGNLRDEMLRADAVSTILRGRLT 507
            LSK+ +ANGW+NPC AE+VRAT+RGI+RVKGTAQDQAKPLLREDLFLVLD LG   R  RDRALLLIGW GGFRSSELTGL V+D+E+ REG++LHLRRSKTDQTG+GRK+GIPLGRTRHCPVAALTAWL   N+P  KIF PVDRHGNLR + LR DAVSTILR RLT
Sbjct:   91 LSKVHAANGWDNPCCAEVVRATLRGIKRVKGTAQDQAKPLLREDLFLVLDALGNGIRTKRDRALLLIGWGGGFRSSELTGLQVSDIEDAREGIILHLRRSKTDQTGEGRKVGIPLGRTRHCPVAALTAWLAATNRPVGKIFLPVDRHGNLRGDQLRPDAVSTILRDRLT 259          
BLAST of mRNA_H-canaliculatus_M_contigs77593.1.1 vs.
Match: tyrosine-type (recombinase/integrase n=3 Tax=Rhodobacterales TaxID=204455 RepID=UPI001C989C2F)

HSP 1 Score: 273 bits (698), Expect = 1.350e-89
Identity = 130/168 (77.38%), Postives = 147/168 (87.50%), Query Frame = 1
Query:    1 LSKIQSANGWENPCRAEIVRATMRGIRRVKGTAQDQAKPLLREDLFLVLDTLGEDTRAIRDRALLLIGWAGGFRSSELTGLDVTDVEEVREGLVLHLRRSKTDQTGQGRKLGIPLGRTRHCPVAALTAWLDTLNQPDSKIFRPVDRHGNLRDEMLRADAVSTILRGRL 504
            LS +  AN W NPCR+EIVRATMRGI+RVKGTAQDQA+PLLREDLF++LDTLG+D R  RDRALLLIGWAGGFRSSEL GLD+ D+EEVREGLVLHLRRSKTDQTGQGRK+GIPLGRTRHCPV +L+AWL  L   +  IFRPVDRHGN++ + LR+DAVSTILR RL
Sbjct:   91 LSMVHKANAWPNPCRSEIVRATMRGIKRVKGTAQDQARPLLREDLFILLDTLGDDARGKRDRALLLIGWAGGFRSSELVGLDLADIEEVREGLVLHLRRSKTDQTGQGRKIGIPLGRTRHCPVGSLSAWLSVLASEEGPIFRPVDRHGNVQSDRLRSDAVSTILRNRL 258          
BLAST of mRNA_H-canaliculatus_M_contigs77593.1.1 vs.
Match: Integrase (n=1 Tax=Thalassococcus sp. S3 TaxID=2017482 RepID=A0A4P6MH70_9RHOB)

HSP 1 Score: 270 bits (690), Expect = 2.210e-88
Identity = 132/168 (78.57%), Postives = 146/168 (86.90%), Query Frame = 1
Query:    1 LSKIQSANGWENPCRAEIVRATMRGIRRVKGTAQDQAKPLLREDLFLVLDTLGEDTRAIRDRALLLIGWAGGFRSSELTGLDVTDVEEVREGLVLHLRRSKTDQTGQGRKLGIPLGRTRHCPVAALTAWLDTLNQPDSKIFRPVDRHGNLRDEMLRADAVSTILRGRL 504
            LSK+  AN   NPCR+EIVRATMRGI+RVKGTAQDQA+PLLREDLF +LD LG+D RA RDRALLLIGWAGGFRSSEL GLD+ D+EEVREGLVLHLRRSKTDQT QGRK+GIPLGRTRHCPVAAL+AWLD     D  IFRPVDRHGN++ + LR+DAVSTILR RL
Sbjct:   91 LSKVHEANACPNPCRSEIVRATMRGIKRVKGTAQDQARPLLREDLFTLLDALGDDPRAFRDRALLLIGWAGGFRSSELVGLDLVDIEEVREGLVLHLRRSKTDQTRQGRKIGIPLGRTRHCPVAALSAWLDAQRVNDGPIFRPVDRHGNVQPDRLRSDAVSTILRNRL 258          
BLAST of mRNA_H-canaliculatus_M_contigs77593.1.1 vs.
Match: site-specific (integrase n=1 Tax=Gemmobacter sp. LW-1 TaxID=1529005 RepID=UPI0006C75F03)

HSP 1 Score: 264 bits (674), Expect = 5.710e-86
Identity = 127/169 (75.15%), Postives = 146/169 (86.39%), Query Frame = 1
Query:    1 LSKIQSANGWENPCRAEIVRATMRGIRRVKGTAQDQAKPLLREDLFLVLDTLGEDTRAIRDRALLLIGWAGGFRSSELTGLDVTDVEEVREGLVLHLRRSKTDQTGQGRKLGIPLGRTRHCPVAALTAWLDTLNQPDSKIFRPVDRHGNLRDEMLRADAVSTILRGRLT 507
            LSK+ +AN W NPC++E+VRAT+RGIRRVKGTAQDQA+PLLREDLFL+LD L +D RA RDRALLLIGWAGGFRSSEL GLD +DVEEVREGLVL+LRRSKTDQ G GRK+G+PLGRTRHCPVAAL AWL      D  +FRPVDRHG+++ + LR+DAVSTILR RLT
Sbjct:   90 LSKVHAANDWPNPCQSEVVRATLRGIRRVKGTAQDQARPLLREDLFLILDALDDDARAQRDRALLLIGWAGGFRSSELVGLDWSDVEEVREGLVLNLRRSKTDQMGHGRKIGVPLGRTRHCPVAALAAWLKASGGDDGPLFRPVDRHGHIQPDRLRSDAVSTILRDRLT 258          
BLAST of mRNA_H-canaliculatus_M_contigs77593.1.1 vs.
Match: Site-specific (recombinase XerC n=1 Tax=Sulfitobacter mediterraneus TaxID=83219 RepID=A0A2T6CD06_9RHOB)

HSP 1 Score: 258 bits (659), Expect = 1.110e-83
Identity = 126/168 (75.00%), Postives = 146/168 (86.90%), Query Frame = 1
Query:    1 LSKIQSANGWENPCRAEIVRATMRGIRRVKGTAQDQAKPLLREDLFLVLDTLGEDTRAIRDRALLLIGWAGGFRSSELTGLDVTDVEEVREGLVLHLRRSKTDQTGQGRKLGIPLGRTRHCPVAALTAWLDTLNQPDSKIFRPVDRHGNLRDEMLRADAVSTILRGRL 504
            LSK   +N W NP R+E+VRATMRGI+RVKGTAQ+QA+PLLREDLF++LD+LG DTRAIRDRALLLIGWAGGFRS+EL GL+  DVEEVREGLVL+LRRSKTDQTGQGRK+GIP GRTR+CPV AL+AWL+ L+     IFRPVDRHGN++   LR+DAVSTILR RL
Sbjct:   91 LSKAHDSNDWPNPVRSELVRATMRGIKRVKGTAQNQARPLLREDLFIMLDSLGVDTRAIRDRALLLIGWAGGFRSAELVGLEPADVEEVREGLVLYLRRSKTDQTGQGRKIGIPRGRTRNCPVVALSAWLEVLHSDGGPIFRPVDRHGNVQPGRLRSDAVSTILRNRL 258          
BLAST of mRNA_H-canaliculatus_M_contigs77593.1.1 vs.
Match: Integrase (n=1 Tax=Sulfitobacter sp. SK011 TaxID=1389004 RepID=A0A345Q9U6_9RHOB)

HSP 1 Score: 226 bits (575), Expect = 7.520e-71
Identity = 110/168 (65.48%), Postives = 129/168 (76.79%), Query Frame = 1
Query:    1 LSKIQSANGWENPCRAEIVRATMRGIRRVKGTAQDQAKPLLREDLFLVLDTLGEDTRAIRDRALLLIGWAGGFRSSELTGLDVTDVEEVREGLVLHLRRSKTDQTGQGRKLGIPLGRTRHCPVAALTAWLDTLNQPDSKIFRPVDRHGNLRDEMLRADAVSTILRGRL 504
            +SK+ SAN W NPCR+E+VR T++GIRR KGTAQ QAKPLLR+DLFLVLD++GE  R  RDRALLL+GWAGG R+SEL GL   D+E V EGL+LHLRRSKTDQ G+GRK+GIPLGRTRHCPV AL  W     +    +F  VDRHG +    LR+DAVSTILR  L
Sbjct:  100 ISKVHSANSWPNPCRSELVRTTLQGIRRAKGTAQKQAKPLLRDDLFLVLDSIGESIRDRRDRALLLLGWAGGMRASELVGLRTDDIEAVSEGLILHLRRSKTDQEGKGRKIGIPLGRTRHCPVTALATWQKYPAEKAGPLFCSVDRHGKVSTTHLRSDAVSTILRNCL 267          
BLAST of mRNA_H-canaliculatus_M_contigs77593.1.1 vs.
Match: Tyrosine-type (recombinase/integrase n=2 Tax=Pukyongiella litopenaei TaxID=2605946 RepID=A0A5C2H1J9_9RHOB)

HSP 1 Score: 205 bits (522), Expect = 1.710e-65
Identity = 98/124 (79.03%), Postives = 111/124 (89.52%), Query Frame = 1
Query:  121 LREDLFLVLDTLGEDTRAIRDRALLLIGWAGGFRSSELTGLDVTDVEEVREGLVLHLRRSKTDQTGQGRKLGIPLGRTRHCPVAALTAWLDTLNQPDSKIFRPVDRHGNLRDEMLRADAVSTIL 492
            +REDLF++LD LG+D RA+RDRALLLIGWAGGFRSSEL GLD+ DVEEVREG VLHLRRSKTDQ GQGRK+GIPLGRTRHCPVAAL+AWL  LN+ +  IFRPVDRHGN++ + LRADAVSTIL
Sbjct:    1 MREDLFILLDALGDDPRALRDRALLLIGWAGGFRSSELVGLDLNDVEEVREGRVLHLRRSKTDQMGQGRKIGIPLGRTRHCPVAALSAWLGILNKDEGPIFRPVDRHGNVQPDRLRADAVSTIL 124          
BLAST of mRNA_H-canaliculatus_M_contigs77593.1.1 vs.
Match: hypothetical (protein n=1 Tax=Methylobacterium sp. WL69 TaxID=2603893 RepID=UPI001FF0041E)

HSP 1 Score: 205 bits (521), Expect = 1.830e-64
Identity = 101/165 (61.21%), Postives = 127/165 (76.97%), Query Frame = 1
Query:    1 LSKIQSANGWENPCRAEIVRATMRGIRRVKGTAQDQAKPLLREDLFLVLDTLGEDTRAIRDRALLLIGWAGGFRSSELTGLDVTDVEEVREGLVLHLRRSKTDQTGQGRKLGIPLGRTRHCPVAALTAWLDTLNQPDSKIFRPVDRHGNLRDEMLRADAVSTILR 495
            LSK+    G  NPCR+EIVRAT+RGI+R +GTAQ QAKPLL+EDL LVL++L E  R  RDRALLL+G+ GGFR SEL GLD  D+ +VR+GL+  LR SKTDQ G+GR++GIP GRTR+CPVAAL AWL   +     IFRPVDRHG++++E L  +AVS ++R
Sbjct:   11 LSKVHEMAGHPNPCRSEIVRATLRGIKRTRGTAQRQAKPLLKEDLVLVLNSLNETVRDTRDRALLLLGFLGGFRRSELVGLDHDDIVQVRQGLIATLRFSKTDQEGKGREIGIPYGRTRNCPVAALQAWLSHSDIHSGPIFRPVDRHGHVKEERLSGEAVSLVIR 175          
BLAST of mRNA_H-canaliculatus_M_contigs77593.1.1 vs.
Match: Integrase (n=1 Tax=Methylobacterium sp. WL69 TaxID=2603893 RepID=A0A5C8SMK6_9HYPH)

HSP 1 Score: 205 bits (521), Expect = 4.240e-63
Identity = 101/165 (61.21%), Postives = 127/165 (76.97%), Query Frame = 1
Query:    1 LSKIQSANGWENPCRAEIVRATMRGIRRVKGTAQDQAKPLLREDLFLVLDTLGEDTRAIRDRALLLIGWAGGFRSSELTGLDVTDVEEVREGLVLHLRRSKTDQTGQGRKLGIPLGRTRHCPVAALTAWLDTLNQPDSKIFRPVDRHGNLRDEMLRADAVSTILR 495
            LSK+    G  NPCR+EIVRAT+RGI+R +GTAQ QAKPLL+EDL LVL++L E  R  RDRALLL+G+ GGFR SEL GLD  D+ +VR+GL+  LR SKTDQ G+GR++GIP GRTR+CPVAAL AWL   +     IFRPVDRHG++++E L  +AVS ++R
Sbjct:  113 LSKVHEMAGHPNPCRSEIVRATLRGIKRTRGTAQRQAKPLLKEDLVLVLNSLNETVRDTRDRALLLLGFLGGFRRSELVGLDHDDIVQVRQGLIATLRFSKTDQEGKGREIGIPYGRTRNCPVAALQAWLSHSDIHSGPIFRPVDRHGHVKEERLSGEAVSLVIR 277          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs77593.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Phage3.810e-9177.38integrase n=3 Tax=Roseobacteraceae TaxID=2854170 R... [more]
Phage5.820e-9178.70integrase n=1 Tax=Roseobacter sp. CCS2 TaxID=39159... [more]
tyrosine-type1.350e-8977.38recombinase/integrase n=3 Tax=Rhodobacterales TaxI... [more]
Integrase2.210e-8878.57n=1 Tax=Thalassococcus sp. S3 TaxID=2017482 RepID=... [more]
site-specific5.710e-8675.15integrase n=1 Tax=Gemmobacter sp. LW-1 TaxID=15290... [more]
Site-specific1.110e-8375.00recombinase XerC n=1 Tax=Sulfitobacter mediterrane... [more]
Integrase7.520e-7165.48n=1 Tax=Sulfitobacter sp. SK011 TaxID=1389004 RepI... [more]
Tyrosine-type1.710e-6579.03recombinase/integrase n=2 Tax=Pukyongiella litopen... [more]
hypothetical1.830e-6461.21protein n=1 Tax=Methylobacterium sp. WL69 TaxID=26... [more]
Integrase4.240e-6361.21n=1 Tax=Methylobacterium sp. WL69 TaxID=2603893 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs77593contigH-canaliculatus_M_contigs77593:4..510 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog391593.RCCS2_04349
PFAMsPhage_int_SAM_1,Phage_integrase
Model size507
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.54e-92
EggNOG OGsCOG0582@1|root,COG0582@2|Bacteria,1MWGG@1224|Proteobacteria,2TRBJ@28211|Alphaproteobacteria,2P3Z5@2433|Roseobacter
DescriptionBelongs to the 'phage' integrase family
Cds size507
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854113.0935135-CDS-H-canaliculatus_M_contigs77593:3..5101696854113.0935135-CDS-H-canaliculatus_M_contigs77593:3..510Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs77593 4..510 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs77593.1.1prot_H-canaliculatus_M_contigs77593.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs77593 4..510 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs77593.1.1

>prot_H-canaliculatus_M_contigs77593.1.1 ID=prot_H-canaliculatus_M_contigs77593.1.1|Name=mRNA_H-canaliculatus_M_contigs77593.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=169bp
LSKIQSANGWENPCRAEIVRATMRGIRRVKGTAQDQAKPLLREDLFLVLD
TLGEDTRAIRDRALLLIGWAGGFRSSELTGLDVTDVEEVREGLVLHLRRS
KTDQTGQGRKLGIPLGRTRHCPVAALTAWLDTLNQPDSKIFRPVDRHGNL
RDEMLRADAVSTILRGRLT
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mRNA from alignment at H-canaliculatus_M_contigs77593:4..510-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs77593.1.1 ID=mRNA_H-canaliculatus_M_contigs77593.1.1|Name=mRNA_H-canaliculatus_M_contigs77593.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=507bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77593:4..510- (Hapterophycus canaliculatus Oshoro7m male)
TTAAGCAAAATCCAGTCGGCCAACGGTTGGGAAAACCCGTGTCGCGCCGA AATCGTCCGCGCAACAATGCGGGGCATAAGACGTGTCAAAGGCACCGCGC AGGATCAGGCTAAACCACTGCTGCGCGAAGACCTGTTCTTGGTTCTTGAT ACCCTCGGTGAAGATACTCGCGCCATACGCGACCGTGCCTTGCTGCTCAT CGGCTGGGCGGGTGGTTTCAGATCATCCGAACTCACAGGGCTGGACGTGA CAGACGTGGAGGAAGTCCGCGAAGGCCTCGTGCTACACCTGCGCCGATCA AAGACCGACCAAACGGGACAAGGGCGAAAGCTGGGCATACCTCTCGGAAG AACCCGACACTGCCCCGTGGCGGCGCTGACAGCGTGGCTGGACACCCTCA ATCAACCCGATAGCAAGATATTCCGTCCTGTAGATCGTCACGGCAACCTG AGGGACGAAATGCTACGTGCGGATGCAGTTTCAACCATCCTCCGGGGTCG TCTGACA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs77593:4..510-

>mRNA_H-canaliculatus_M_contigs77593.1.1 ID=mRNA_H-canaliculatus_M_contigs77593.1.1|Name=mRNA_H-canaliculatus_M_contigs77593.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=507bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77593:4..510- (Hapterophycus canaliculatus Oshoro7m male)
TTAAGCAAAATCCAGTCGGCCAACGGTTGGGAAAACCCGTGTCGCGCCGA
AATCGTCCGCGCAACAATGCGGGGCATAAGACGTGTCAAAGGCACCGCGC
AGGATCAGGCTAAACCACTGCTGCGCGAAGACCTGTTCTTGGTTCTTGAT
ACCCTCGGTGAAGATACTCGCGCCATACGCGACCGTGCCTTGCTGCTCAT
CGGCTGGGCGGGTGGTTTCAGATCATCCGAACTCACAGGGCTGGACGTGA
CAGACGTGGAGGAAGTCCGCGAAGGCCTCGTGCTACACCTGCGCCGATCA
AAGACCGACCAAACGGGACAAGGGCGAAAGCTGGGCATACCTCTCGGAAG
AACCCGACACTGCCCCGTGGCGGCGCTGACAGCGTGGCTGGACACCCTCA
ATCAACCCGATAGCAAGATATTCCGTCCTGTAGATCGTCACGGCAACCTG
AGGGACGAAATGCTACGTGCGGATGCAGTTTCAACCATCCTCCGGGGTCG
TCTGACA
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