mRNA_H-canaliculatus_M_contigs77535.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs77535.1.1
Unique NamemRNA_H-canaliculatus_M_contigs77535.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs77535.1.1 vs.
Match: Guanylate-binding (protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNQ2_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 2.010e-35
Identity = 64/98 (65.31%), Postives = 79/98 (80.61%), Query Frame = 1 
Query:    1 TQIAVASISGPYRTGKSYFLNYVANQILARATDPPRDPGTFSFTRAFQTSPGIDSDGGSG-GGDCFFQLLPACANPLPDQPGTALLLLDTPGLMAPRR 291
            T++AV SI+GPYR+GKSYFLN++AN +LA   DPP++PG+F F R F TSP ++++GG G  G C FQL+PAC  PLPDQ GTALLLLDTPGLM PRR
Sbjct:   93 TKLAVVSIAGPYRSGKSYFLNFLANHVLANGFDPPKEPGSFDFERPFPTSPTLNAEGGGGEAGLCRFQLVPACGKPLPDQEGTALLLLDTPGLMTPRR 190
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BLAST of mRNA_H-canaliculatus_M_contigs77535.1.1 vs.
Match: GBP (domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2D9_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 1.780e-34
Identity = 64/101 (63.37%), Postives = 79/101 (78.22%), Query Frame = 1 
Query:    1 TQIAVASISGPYRTGKSYFLNYVANQILARATDPPRDPGTFSFTRAFQTSPGIDSDGGSG----GGDCFFQLLPACANPLPDQPGTALLLLDTPGLMAPRR 291
            +++AV SI+GPYR+GKSYFLN++AN +LA   DPP+DPG+F F R F TSP ++++GG       G C FQL+PACA PLPDQ GTALLLLDTPGLM PRR
Sbjct:   93 SKLAVVSIAGPYRSGKSYFLNFLANHVLANGFDPPKDPGSFDFERMFPTSPTLNTEGGXXXXXEAGLCRFQLVPACAKPLPDQEGTALLLLDTPGLMTPRR 193
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs77535.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Guanylate-binding2.010e-3565.31protein, putative n=1 Tax=Ectocarpus siliculosus T... [more]
GBP1.780e-3463.37domain-containing protein (Fragment) n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs77535contigH-canaliculatus_M_contigs77535:83..376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FNQ2
PFAMsGBP
Model size294
Max annot lvl2759|Eukaryota
KEGG koko:K20899
KEGG Pathwayko04621,map04621
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.3e-36
EggNOG OGsKOG2037@1|root,KOG2037@2759|Eukaryota
Ec32 ortholog descriptionGuanylate-binding protein, N-terminal
Ec32 orthologEc-01_004670.1
DescriptionGTPase activity
Cds size294
COG categoryS
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854112.5943623-CDS-H-canaliculatus_M_contigs77535:82..3761696854112.5943623-CDS-H-canaliculatus_M_contigs77535:82..376Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs77535 83..376 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs77535.1.1prot_H-canaliculatus_M_contigs77535.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs77535 83..376 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs77535.1.1

>prot_H-canaliculatus_M_contigs77535.1.1 ID=prot_H-canaliculatus_M_contigs77535.1.1|Name=mRNA_H-canaliculatus_M_contigs77535.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=98bp
TQIAVASISGPYRTGKSYFLNYVANQILARATDPPRDPGTFSFTRAFQTS
PGIDSDGGSGGGDCFFQLLPACANPLPDQPGTALLLLDTPGLMAPRR*
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mRNA from alignment at H-canaliculatus_M_contigs77535:83..376+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs77535.1.1 ID=mRNA_H-canaliculatus_M_contigs77535.1.1|Name=mRNA_H-canaliculatus_M_contigs77535.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=294bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77535:83..376+ (Hapterophycus canaliculatus Oshoro7m male)
ACGCAGATCGCCGTCGCCTCCATTTCCGGACCGTACCGCACGGGCAAGTC
CTACTTCCTCAACTACGTCGCCAACCAAATCCTGGCTCGCGCGACCGACC
CGCCCAGAGATCCGGGAACTTTCTCGTTCACGCGGGCGTTCCAAACGTCG
CCAGGCATCGACAGCGACGGCGGTAGCGGCGGAGGAGACTGCTTCTTCCA
GCTGCTGCCGGCTTGCGCGAATCCTCTGCCCGATCAGCCAGGAACGGCGC
TGCTTCTGTTGGACACGCCGGGGCTGATGGCGCCGCGCAGGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs77535:83..376+

>mRNA_H-canaliculatus_M_contigs77535.1.1 ID=mRNA_H-canaliculatus_M_contigs77535.1.1|Name=mRNA_H-canaliculatus_M_contigs77535.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=294bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77535:83..376+ (Hapterophycus canaliculatus Oshoro7m male)
ACGCAGATCGCCGTCGCCTCCATTTCCGGACCGTACCGCACGGGCAAGTC
CTACTTCCTCAACTACGTCGCCAACCAAATCCTGGCTCGCGCGACCGACC
CGCCCAGAGATCCGGGAACTTTCTCGTTCACGCGGGCGTTCCAAACGTCG
CCAGGCATCGACAGCGACGGCGGTAGCGGCGGAGGAGACTGCTTCTTCCA
GCTGCTGCCGGCTTGCGCGAATCCTCTGCCCGATCAGCCAGGAACGGCGC
TGCTTCTGTTGGACACGCCGGGGCTGATGGCGCCGCGCAGGTGA
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