mRNA_H-canaliculatus_M_contigs77518.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs77518.1.1
Unique NamemRNA_H-canaliculatus_M_contigs77518.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs77518.1.1 vs.
Match: Cytochrome (b n=1 Tax=Shewanella sp. SR44-4 TaxID=2760935 RepID=A0A7W4FVK5_9GAMM)

HSP 1 Score: 182 bits (462), Expect = 2.120e-56
Identity = 84/121 (69.42%), Postives = 100/121 (82.64%), Query Frame = 1
Query:   10 LRFLWRVSHPMPALPSTISRPQAIAAKVIHLTLYVLMIIVPVTGLATVAAHDVPVVLIGGIDLQDTFAFLGHRSFEFRRFVHAQAMHILVALVIGHVGAALVHQFWFKDDIVRRMLRETRQ 372
            LR+LWR SHP P LP+T+SRPQ IAAKVIH TLY+LMI+VPVTGL T  AHDVPVV++G IDLQDTF+F GH +F+ +RF+HAQAMH    L+IGH+GAALVHQFW KD + RRML E +Q
Sbjct:   66 LRYLWRTSHPPPELPATLSRPQVIAAKVIHSTLYILMIVVPVTGLMTAVAHDVPVVVLGVIDLQDTFSFFGHDNFDLKRFIHAQAMHTFAGLIIGHIGAALVHQFWIKDGVFRRMLWEKKQ 186          
BLAST of mRNA_H-canaliculatus_M_contigs77518.1.1 vs.
Match: Conserved (hypothetical cytochrome B561 n=1 Tax=Azoarcus sp. (strain BH72) TaxID=418699 RepID=A1K9I0_AZOSB)

HSP 1 Score: 82.8 bits (203), Expect = 2.660e-17
Identity = 50/122 (40.98%), Postives = 69/122 (56.56%), Query Frame = 1
Query:    1 LTVLRFLWRVSHPMPALPSTISRPQAIAAKVIHLTLYVLMIIVPVTGLATVAAHDVPVVLIGGIDLQDTFA---FLGHRSFEFRRFVHAQAMHILVALVIGHVGAALVHQFWFKDDIVRRML 357
            L +LR  WR +HP PALP+ +   Q  AA  IH+ LYVLM+++P++G    +A     V  G + L D  A    LG R     + +H     +L  LV+GHVGAAL H F  +DD++ RML
Sbjct:   63 LVLLRLGWRATHPAPALPAAMPAYQRAAAGAIHVLLYVLMLLIPISGWLMSSAKGFQTVWFGVLPLPDLVAKDATLGDRL----QTLHFALNMVLAGLVLGHVGAALKHHFIDRDDVLTRML 180          
BLAST of mRNA_H-canaliculatus_M_contigs77518.1.1 vs.
Match: Cytochrome (b n=1 Tax=Rudaea sp. TaxID=2136325 RepID=A0A8J7PX43_9GAMM)

HSP 1 Score: 81.6 bits (200), Expect = 6.810e-17
Identity = 49/120 (40.83%), Postives = 72/120 (60.00%), Query Frame = 1
Query:    7 VLRFLWRVSHPMPALPSTISRPQAIAAKVIHLTLYVLMIIVPVTGLATVAAHDVPVVLIGGIDLQDTFAFLGHRSFEFRRF---VHAQAMHILVALVIGHVGAALVHQFWFKDDIVRRML 357
            VLR+ WR++H  PALP+ I   Q  A+ V+H TLY+LM++VP+TG     A   PV   G   L D   F+G      R     +H   + +LV L++GH+GAAL H+F  +D++++RML
Sbjct:   63 VLRWAWRLTHRPPALPAAIPSWQQTASHVLHWTLYILMLVVPLTGYVHRLAGAHPVNFFG---LGDLPVFIGKNE-PLRLLTDTLHETLVWVLVILIVGHIGAALKHRFVDRDNVLQRML 178          
BLAST of mRNA_H-canaliculatus_M_contigs77518.1.1 vs.
Match: Cytochrome (b n=1 Tax=Alcaligenaceae bacterium TaxID=2021368 RepID=A0A847MLI3_9BURK)

HSP 1 Score: 81.3 bits (199), Expect = 9.810e-17
Identity = 47/119 (39.50%), Postives = 66/119 (55.46%), Query Frame = 1
Query:    1 LTVLRFLWRVSHPMPALPSTISRPQAIAAKVIHLTLYVLMIIVPVTGLATVAAHDVPVVLIGGIDLQDTFAFLGHRSFEFRRFVHAQAMHILVALVIGHVGAALVHQFWFKDDIVRRML 357
            L ++R  WR+SHP P LP T+     +AA   H  LYVLMI +P++G    +A   PVV  G + L D  A         +   H    + L+A++IGH+GAAL H F  KD+++ RML
Sbjct:   58 LAIVRLAWRLSHPAPDLPETMGPISRLAAHAGHWVLYVLMIAIPLSGWLMSSAQGFPVVWFGVLPLPDLVAKNAELGAVLKD-AHVLLNYTLIAVLIGHIGAALQHHFIKKDNVLIRML 175          
BLAST of mRNA_H-canaliculatus_M_contigs77518.1.1 vs.
Match: cytochrome (b n=1 Tax=Chromobacterium sp. ASV5 TaxID=2795109 RepID=UPI000B544B6F)

HSP 1 Score: 80.9 bits (198), Expect = 1.290e-16
Identity = 48/119 (40.34%), Postives = 66/119 (55.46%), Query Frame = 1
Query:   10 LRFLWRVSHPMPALPSTISRPQAIAAKVIHLTLYVLMIIVPVTGLATVAAHDVPVVLIGGIDLQDTFA---FLGHRSFEFRRFVHAQAMHILVALVIGHVGAALVHQFWFKDDIVRRML 357
            LR  WR  H  PALP+ +       A + H  LY+LMI++P++G    +A  VP V  G + L D  A    LG R     +FVH     +L+A+V GHV AAL H  + KDD+++RML
Sbjct:   60 LRLAWRAGHRPPALPAAMGALTRALAHLGHAALYLLMIVIPLSGWLMSSAKGVPTVYFGVLPLPDLIAPDPRLGERL----QFVHMTLNFLLIAVVAGHVAAALKHHLFDKDDVLKRML 174          
BLAST of mRNA_H-canaliculatus_M_contigs77518.1.1 vs.
Match: Cytochrome (b n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7Y4WQU0_9PROT)

HSP 1 Score: 80.5 bits (197), Expect = 2.160e-16
Identity = 47/125 (37.60%), Postives = 70/125 (56.00%), Query Frame = 1
Query:    1 LTVLRFLWRVSHPMPALPSTISRPQAIAAKVIHLTLYVLMIIVPVTGLATVAAHD--VPVVLIGGIDLQDTFAFLGHRSFEFRRFVHAQAMHILVALVIGHVGAALVHQFWFKDDIVRRMLRETR 369
            LTV+R +WRV HP+PALP+ +   Q   A V H  LY LM+ +P++G A  ++    +P +L G  +L          + EF    H    ++++ L+I HV AAL H F  +D ++RRML  TR
Sbjct:   61 LTVVRIIWRVMHPVPALPAGMPAWQRWGAHVSHFGLYALMLAIPLSGWAAASSSSLGIPTMLFGAAELPSLPVGNDRDTHEFYEEAHELLGNLMILLLIVHVVAALKHHFVDRDTVLRRMLPFTR 185          
BLAST of mRNA_H-canaliculatus_M_contigs77518.1.1 vs.
Match: Cytochrome (B561 n=1 Tax=Methylotenera versatilis (strain 301) TaxID=666681 RepID=D7DP76_METV0)

HSP 1 Score: 80.5 bits (197), Expect = 2.160e-16
Identity = 47/123 (38.21%), Postives = 66/123 (53.66%), Query Frame = 1
Query:    1 LTVLRFLWRVSHPMPALPSTISRPQAIAAKVIHLTLYVLMIIVPVTGLATVAAHDVPVVLIGGIDLQDTFAFLGHRSFEFRRFVHAQAMHILVALVIGHVGAALVHQFWFKDDIVRRMLRETR 369
            L ++R LWR +H  P LP  +SR   +AA + H  LY+LMI +P++G    +A     V  G I + D            R  VH     +L+ALVIGH GAA  H F+ KDD++ RML + +
Sbjct:   64 LVMIRLLWRFTHSPPPLPMNMSRTAEVAAHIGHGLLYLLMIAIPLSGWLMSSAKGFQTVYFGIIPIPDLLTKNKELGNALRE-VHETLNFVLIALVIGHAGAAFKHHFFDKDDVLTRMLPKRK 185          
BLAST of mRNA_H-canaliculatus_M_contigs77518.1.1 vs.
Match: cytochrome (b n=1 Tax=Novosphingobium profundi TaxID=1774954 RepID=UPI001BDB0B69)

HSP 1 Score: 79.7 bits (195), Expect = 3.170e-16
Identity = 46/126 (36.51%), Postives = 73/126 (57.94%), Query Frame = 1
Query:    1 LTVLRFLWRVSHPMPALPSTISRPQAIAAKVIHLTLYVLMIIVPVTGLATVAAHDVPVVLIGGIDL-------QDTFAFLGHRSFEFRRFVHAQAMHILVALVIGHVGAALVHQFWFKDDIVRRML 357
            L+++R  WR++   PA P+T++  + +AAK++H+ LY+ M+ +PVTG    +A   P+   G  D+           A +GH        +H    ++L+ALV+GHV AAL H F  +DDI+RRML
Sbjct:   54 LSLVRLGWRLTWTAPAYPATMTPLEVLAAKLVHVVLYLFMLAMPVTGWIMASAGKYPLSWFGLFDMPKLPVAKDSVLAGIGHE-------MHEVGGYLLIALVLGHVLAALRHHFLVRDDILRRML 172          
BLAST of mRNA_H-canaliculatus_M_contigs77518.1.1 vs.
Match: Cytochrome (b n=1 Tax=Paraburkholderia sp. TaxID=1926495 RepID=A0A522MRV8_9BURK)

HSP 1 Score: 80.1 bits (196), Expect = 3.180e-16
Identity = 49/119 (41.18%), Postives = 67/119 (56.30%), Query Frame = 1
Query:    1 LTVLRFLWRVSHPMPALPSTISRPQAIAAKVIHLTLYVLMIIVPVTGLATVAAHDVPVVLIGGIDLQDTFAFLGHRSFEFRRFVHAQAMHILVALVIGHVGAALVHQFWFKDDIVRRML 357
            L  LR LWR +H  P LP      Q  AA ++H+ LYVLMI++P+TG    +A +VPVV +G + L    A        F+   H    + L ALV+ HVGAAL HQ+  +D ++ RML
Sbjct:   67 LATLRILWRATHRAPPLPLGTPAWQRAAAHLVHVLLYVLMIVIPITGYLFSSASNVPVVYLGIVPLPRLIAPDPTLKVVFKT-AHLVLNYTLAALVLAHVGAALKHQWVDRDRLLSRML 184          
BLAST of mRNA_H-canaliculatus_M_contigs77518.1.1 vs.
Match: Cytochrome (b561 n=5 Tax=Paraburkholderia TaxID=1822464 RepID=A0A1H4DB83_9BURK)

HSP 1 Score: 79.0 bits (193), Expect = 9.040e-16
Identity = 47/119 (39.50%), Postives = 69/119 (57.98%), Query Frame = 1
Query:    1 LTVLRFLWRVSHPMPALPSTISRPQAIAAKVIHLTLYVLMIIVPVTGLATVAAHDVPVVLIGGIDLQDTFAFLGHRSFEFRRFVHAQAMHILVALVIGHVGAALVHQFWFKDDIVRRML 357
            L VLR LWR +H  PALP  ++  Q IAA+++H+ LYVLMI +P +G    +A ++PVV +G + L    A   H      + VH    + L+ LV+ HV  AL HQ   +D ++ RM+
Sbjct:   68 LAVLRILWRATHAAPALPGGMAGWQRIAAQLVHVLLYVLMIAIPASGYLYSSASNIPVVYLGLVRLPLLIAPDPHLK-AILKVVHVTLNYGLLTLVVLHVAGALKHQLVDRDGLLSRMI 185          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs77518.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Cytochrome2.120e-5669.42b n=1 Tax=Shewanella sp. SR44-4 TaxID=2760935 RepI... [more]
Conserved2.660e-1740.98hypothetical cytochrome B561 n=1 Tax=Azoarcus sp. ... [more]
Cytochrome6.810e-1740.83b n=1 Tax=Rudaea sp. TaxID=2136325 RepID=A0A8J7PX4... [more]
Cytochrome9.810e-1739.50b n=1 Tax=Alcaligenaceae bacterium TaxID=2021368 R... [more]
cytochrome1.290e-1640.34b n=1 Tax=Chromobacterium sp. ASV5 TaxID=2795109 R... [more]
Cytochrome2.160e-1637.60b n=1 Tax=Alphaproteobacteria bacterium TaxID=1913... [more]
Cytochrome2.160e-1638.21B561 n=1 Tax=Methylotenera versatilis (strain 301)... [more]
cytochrome3.170e-1636.51b n=1 Tax=Novosphingobium profundi TaxID=1774954 R... [more]
Cytochrome3.180e-1641.18b n=1 Tax=Paraburkholderia sp. TaxID=1926495 RepID... [more]
Cytochrome9.040e-1639.50b561 n=5 Tax=Paraburkholderia TaxID=1822464 RepID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs77518contigH-canaliculatus_M_contigs77518:136..510 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog62928.azo2869
PFAMsNi_hydr_CYTB
Model size375
Max annot lvl206389|Rhodocyclales
KEGG koko:K12262
Hectar predicted targeting categorysignal peptide
Exons1
Evalue4.35e-18
EggNOG OGsCOG3038@1|root,COG3038@2|Bacteria,1MZ7X@1224|Proteobacteria,2VS28@28216|Betaproteobacteria,2KWAK@206389|Rhodocyclales
DescriptionCytochrome B561
Cds size375
COG categoryC
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854112.4334278-CDS-H-canaliculatus_M_contigs77518:135..5101696854112.4334278-CDS-H-canaliculatus_M_contigs77518:135..510Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs77518 136..510 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs77518.1.1prot_H-canaliculatus_M_contigs77518.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs77518 136..510 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs77518.1.1

>prot_H-canaliculatus_M_contigs77518.1.1 ID=prot_H-canaliculatus_M_contigs77518.1.1|Name=mRNA_H-canaliculatus_M_contigs77518.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=125bp
LTVLRFLWRVSHPMPALPSTISRPQAIAAKVIHLTLYVLMIIVPVTGLAT
VAAHDVPVVLIGGIDLQDTFAFLGHRSFEFRRFVHAQAMHILVALVIGHV
GAALVHQFWFKDDIVRRMLRETRQ*
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mRNA from alignment at H-canaliculatus_M_contigs77518:136..510-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs77518.1.1 ID=mRNA_H-canaliculatus_M_contigs77518.1.1|Name=mRNA_H-canaliculatus_M_contigs77518.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=375bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77518:136..510- (Hapterophycus canaliculatus Oshoro7m male)
CTGACCGTACTCAGATTTCTGTGGCGGGTATCACATCCAATGCCAGCTCT TCCATCGACGATCTCTCGTCCACAGGCGATCGCTGCAAAGGTCATTCACT TAACACTCTACGTCCTGATGATTATAGTGCCGGTGACGGGACTTGCGACA GTAGCAGCACACGATGTGCCGGTGGTCCTAATTGGGGGTATCGATCTGCA GGACACGTTTGCCTTTCTAGGTCATCGTAGTTTTGAATTCAGGCGTTTCG TGCACGCGCAGGCGATGCACATACTCGTAGCGCTGGTTATTGGCCATGTC GGCGCGGCTCTGGTGCATCAATTTTGGTTCAAGGACGACATAGTTCGCAG AATGCTCAGGGAGACAAGACAATGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs77518:136..510-

>mRNA_H-canaliculatus_M_contigs77518.1.1 ID=mRNA_H-canaliculatus_M_contigs77518.1.1|Name=mRNA_H-canaliculatus_M_contigs77518.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=375bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77518:136..510- (Hapterophycus canaliculatus Oshoro7m male)
CTGACCGTACTCAGATTTCTGTGGCGGGTATCACATCCAATGCCAGCTCT
TCCATCGACGATCTCTCGTCCACAGGCGATCGCTGCAAAGGTCATTCACT
TAACACTCTACGTCCTGATGATTATAGTGCCGGTGACGGGACTTGCGACA
GTAGCAGCACACGATGTGCCGGTGGTCCTAATTGGGGGTATCGATCTGCA
GGACACGTTTGCCTTTCTAGGTCATCGTAGTTTTGAATTCAGGCGTTTCG
TGCACGCGCAGGCGATGCACATACTCGTAGCGCTGGTTATTGGCCATGTC
GGCGCGGCTCTGGTGCATCAATTTTGGTTCAAGGACGACATAGTTCGCAG
AATGCTCAGGGAGACAAGACAATGA
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