mRNA_H-canaliculatus_M_contigs77513.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-canaliculatus_M_contigs77513.1.1
Unique Name	mRNA_H-canaliculatus_M_contigs77513.1.1
Type	mRNA
Organism	Hapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)

Homology

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BLAST of mRNA_H-canaliculatus_M_contigs77513.1.1 vs.
Match: Pyridoxal (phosphate homeostasis protein n=1 Tax=Sulfitobacter sp. TaxID=1903071 RepID=A0A3D2F6N7_9RHOB)

HSP 1 Score: 308 bits (788), Expect = 8.750e-105
Identity = 145/170 (85.29%), Postives = 159/170 (93.53%), Query Frame = 1

Query:    1 VQPNERVAAVLAEGHRCFGENRVQEAAGKWPDFRERFDNIDLHLIGPLQSNKARQAFELFQTIHTLDRPKLATAFARLAQEMGHCPDLFIQVNTGEEPQKAGVMPVDVDGFVADCIALDLPVKGLMCIPPVEEEPSLHFALLAKMAARNGLNGLSMGMSSDFERAVALGA 510
            VQPNERVA+VL EGHRCFGEN+VQEA GKWPDFRE +D +DLHLIGPLQSNKARQAFELFQ+IHTLDRPKLAT FARLAQEMG+CPD+FIQVNTGEEPQKAGVMP +VD FVA+C++LDLPVKGLMCIPPVEEE SLHFALLAKMA RNGL+ LSMGMSSDFERA++ GA
Sbjct:   32 VQPNERVASVLEEGHRCFGENKVQEAGGKWPDFRETYDGVDLHLIGPLQSNKARQAFELFQSIHTLDRPKLATTFARLAQEMGYCPDMFIQVNTGEEPQKAGVMPREVDAFVAECVSLDLPVKGLMCIPPVEEEASLHFALLAKMAKRNGLSCLSMGMSSDFERAISFGA 201

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BLAST of mRNA_H-canaliculatus_M_contigs77513.1.1 vs.
Match: Pyridoxal (phosphate homeostasis protein n=1 Tax=Roseovarius albus TaxID=1247867 RepID=A0A1X7A8A3_9RHOB)

HSP 1 Score: 303 bits (775), Expect = 9.270e-103
Identity = 142/170 (83.53%), Postives = 157/170 (92.35%), Query Frame = 1

Query:    1 VQPNERVAAVLAEGHRCFGENRVQEAAGKWPDFRERFDNIDLHLIGPLQSNKARQAFELFQTIHTLDRPKLATAFARLAQEMGHCPDLFIQVNTGEEPQKAGVMPVDVDGFVADCIALDLPVKGLMCIPPVEEEPSLHFALLAKMAARNGLNGLSMGMSSDFERAVALGA 510
            VQPNERV AVL EGHRC+GENRVQEAAGKWP+FRE+FD IDLHLIGPLQ+NKARQAFELFQ+IH++DRPKLA   ARLAQEMGHCPDLFIQVNTGEEPQKAG+MP + D FVA+C A+DLPVKGLMCIPPVEEE SLHFALLAK+A RNGLNGLSMGMSSDFE+A++ GA
Sbjct:   32 VQPNERVDAVLTEGHRCYGENRVQEAAGKWPEFREQFDGIDLHLIGPLQTNKARQAFELFQSIHSVDRPKLAKTIARLAQEMGHCPDLFIQVNTGEEPQKAGIMPREADAFVAECNAMDLPVKGLMCIPPVEEEASLHFALLAKIAERNGLNGLSMGMSSDFEKAISFGA 201

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BLAST of mRNA_H-canaliculatus_M_contigs77513.1.1 vs.
Match: Pyridoxal (phosphate homeostasis protein n=3 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A1B0ZS16_9RHOB)

HSP 1 Score: 299 bits (766), Expect = 2.100e-101
Identity = 141/170 (82.94%), Postives = 155/170 (91.18%), Query Frame = 1

Query:    1 VQPNERVAAVLAEGHRCFGENRVQEAAGKWPDFRERFDNIDLHLIGPLQSNKARQAFELFQTIHTLDRPKLATAFARLAQEMGHCPDLFIQVNTGEEPQKAGVMPVDVDGFVADCIALDLPVKGLMCIPPVEEEPSLHFALLAKMAARNGLNGLSMGMSSDFERAVALGA 510
            VQPNERV AVL EGHRCFGENRVQEAAGKWP F ERFD IDLHLIGPLQSNKARQA ELF +IH++DRPKLA A ARLAQE+GHCPDLFIQVNTGEE QKAG++P D D F+++C ALDLPVKGLMCIPPV+EEP+LHFALLAK+AARNGL+GLSMGMSSDFE A+ALGA
Sbjct:   32 VQPNERVEAVLEEGHRCFGENRVQEAAGKWPGFAERFDGIDLHLIGPLQSNKARQAMELFDSIHSVDRPKLAKAIARLAQELGHCPDLFIQVNTGEEEQKAGILPADADAFISECRALDLPVKGLMCIPPVDEEPALHFALLAKIAARNGLDGLSMGMSSDFETAIALGA 201

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BLAST of mRNA_H-canaliculatus_M_contigs77513.1.1 vs.
Match: Pyridoxal (phosphate homeostasis protein n=1 Tax=Roseovarius faecimaris TaxID=2494550 RepID=A0A6I6IKS2_9RHOB)

HSP 1 Score: 298 bits (764), Expect = 3.960e-101
Identity = 143/170 (84.12%), Postives = 154/170 (90.59%), Query Frame = 1

Query:    1 VQPNERVAAVLAEGHRCFGENRVQEAAGKWPDFRERFDNIDLHLIGPLQSNKARQAFELFQTIHTLDRPKLATAFARLAQEMGHCPDLFIQVNTGEEPQKAGVMPVDVDGFVADCIALDLPVKGLMCIPPVEEEPSLHFALLAKMAARNGLNGLSMGMSSDFERAVALGA 510
            VQPN RV AVL EGHRCFGENRVQEAAGKWP+FRERFD IDLHLIGPLQ+NKARQAF LFQ IH++DRPKLA   ARLAQE GHCP+LF+QVNTGEEPQKAGV+P + D FVA+C ALDLPVKGLMCIPPV+EEPSLHFALLAK+AARNGL GLSMGMS DFERAVALGA
Sbjct:   32 VQPNARVEAVLEEGHRCFGENRVQEAAGKWPEFRERFDGIDLHLIGPLQTNKARQAFGLFQAIHSVDRPKLAHTIARLAQEEGHCPELFLQVNTGEEPQKAGVLPREADDFVAECRALDLPVKGLMCIPPVDEEPSLHFALLAKIAARNGLTGLSMGMSGDFERAVALGA 201

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BLAST of mRNA_H-canaliculatus_M_contigs77513.1.1 vs.
Match: Pyridoxal (phosphate homeostasis protein n=7 Tax=Rhodobacterales TaxID=204455 RepID=A0A0A0HIP0_9RHOB)

HSP 1 Score: 297 bits (760), Expect = 1.610e-100
Identity = 142/170 (83.53%), Postives = 155/170 (91.18%), Query Frame = 1

Query:    1 VQPNERVAAVLAEGHRCFGENRVQEAAGKWPDFRERFDNIDLHLIGPLQSNKARQAFELFQTIHTLDRPKLATAFARLAQEMGHCPDLFIQVNTGEEPQKAGVMPVDVDGFVADCIALDLPVKGLMCIPPVEEEPSLHFALLAKMAARNGLNGLSMGMSSDFERAVALGA 510
            VQP +RVAAVL +GHR FGENRVQEAAG+WP F+ER+  I LHLIGPLQSNKARQA E+FQ IH++DRPK+A A ARLAQEMGHCPDLF+QVNTGEEPQKAGV+P DVDGFVADC ALDLPVKGLMCIPPVEEEPSLHFALLAKMAARNGL+GLSMGMS DFERA+A GA
Sbjct:   32 VQPEDRVAAVLDQGHRVFGENRVQEAAGRWPAFQERYSGIILHLIGPLQSNKARQAMEMFQAIHSVDRPKIAQAIARLAQEMGHCPDLFVQVNTGEEPQKAGVLPGDVDGFVADCRALDLPVKGLMCIPPVEEEPSLHFALLAKMAARNGLSGLSMGMSGDFERAIAQGA 201

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BLAST of mRNA_H-canaliculatus_M_contigs77513.1.1 vs.
Match: YggS (family pyridoxal phosphate-dependent enzyme n=1 Tax=Roseobacter sp. MH60115 TaxID=2785324 RepID=UPI0018A2AF30)

HSP 1 Score: 297 bits (760), Expect = 1.610e-100
Identity = 139/170 (81.76%), Postives = 156/170 (91.76%), Query Frame = 1

Query:    1 VQPNERVAAVLAEGHRCFGENRVQEAAGKWPDFRERFDNIDLHLIGPLQSNKARQAFELFQTIHTLDRPKLATAFARLAQEMGHCPDLFIQVNTGEEPQKAGVMPVDVDGFVADCIALDLPVKGLMCIPPVEEEPSLHFALLAKMAARNGLNGLSMGMSSDFERAVALGA 510
            VQPN RV AVL EGHRCFGENRVQEAAGKWP FRE FD IDLHLIGPLQ+NKARQ+FELFQ+IH+LDRPKLA  FARLAQEMG CP++FIQVNTGEEPQKAGV+P D D FVA+C A+DLP++GLMCIPP+EEE +LHFALLAK+AARNGL+GLSMGMSSDFE+A+ALGA
Sbjct:   32 VQPNARVEAVLQEGHRCFGENRVQEAAGKWPAFREAFDGIDLHLIGPLQTNKARQSFELFQSIHSLDRPKLAKTFARLAQEMGTCPEIFIQVNTGEEPQKAGVLPADTDAFVAECQAMDLPIRGLMCIPPIEEEAALHFALLAKIAARNGLSGLSMGMSSDFEKAIALGA 201

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BLAST of mRNA_H-canaliculatus_M_contigs77513.1.1 vs.
Match: Pyridoxal (phosphate homeostasis protein n=1 Tax=Roseobacter cerasinus TaxID=2602289 RepID=A0A640VNH4_9RHOB)

HSP 1 Score: 296 bits (758), Expect = 3.250e-100
Identity = 140/170 (82.35%), Postives = 154/170 (90.59%), Query Frame = 1

Query:    1 VQPNERVAAVLAEGHRCFGENRVQEAAGKWPDFRERFDNIDLHLIGPLQSNKARQAFELFQTIHTLDRPKLATAFARLAQEMGHCPDLFIQVNTGEEPQKAGVMPVDVDGFVADCIALDLPVKGLMCIPPVEEEPSLHFALLAKMAARNGLNGLSMGMSSDFERAVALGA 510
            VQPN RV AVL EGHRCFGENRVQEAAGKWP+FR  FD IDLHLIGPLQ+NKARQAFELFQ IH+LDRPKLA +FARLAQE G CP LF+Q+NTGEEPQKAGV+P +VD FVA+C ALDLP+KGLMCIPP+EEE SLHFALLAK+A RNGLNGLSMGMS+DFERA+ALGA
Sbjct:   32 VQPNARVEAVLKEGHRCFGENRVQEAAGKWPEFRADFDGIDLHLIGPLQTNKARQAFELFQAIHSLDRPKLAKSFARLAQETGGCPALFVQINTGEEPQKAGVLPAEVDAFVAECRALDLPIKGLMCIPPIEEEASLHFALLAKIAERNGLNGLSMGMSADFERAIALGA 201

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BLAST of mRNA_H-canaliculatus_M_contigs77513.1.1 vs.
Match: YggS (family pyridoxal phosphate-dependent enzyme n=1 Tax=Roseovarius gahaiensis TaxID=2716691 RepID=UPI00141EEC4B)

HSP 1 Score: 296 bits (758), Expect = 3.250e-100
Identity = 140/169 (82.84%), Postives = 153/169 (90.53%), Query Frame = 1

Query:    4 QPNERVAAVLAEGHRCFGENRVQEAAGKWPDFRERFDNIDLHLIGPLQSNKARQAFELFQTIHTLDRPKLATAFARLAQEMGHCPDLFIQVNTGEEPQKAGVMPVDVDGFVADCIALDLPVKGLMCIPPVEEEPSLHFALLAKMAARNGLNGLSMGMSSDFERAVALGA 510
            QPNERVAAVL +GHRCFGENRVQEAAGKWPDFRERF  IDLHLIGPLQ+NKARQAFELFQ+IH+LDRPKLA   ARLAQE GHCPDLF+QVNTGEE QKAG++P D D FV DC ALDLP+KGLMCIPPV+EE SLHFALLAK+A RNGL+GLSMGMS DFE+A+ALGA
Sbjct:   33 QPNERVAAVLEQGHRCFGENRVQEAAGKWPDFRERFQEIDLHLIGPLQTNKARQAFELFQSIHSLDRPKLAKTLARLAQEEGHCPDLFVQVNTGEEDQKAGILPGDSDDFVKDCKALDLPIKGLMCIPPVDEEASLHFALLAKIAERNGLDGLSMGMSDDFEKAIALGA 201

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BLAST of mRNA_H-canaliculatus_M_contigs77513.1.1 vs.
Match: Pyridoxal (phosphate homeostasis protein n=16 Tax=Rhodobacterales TaxID=204455 RepID=Q1GKN5_RUEST)

HSP 1 Score: 296 bits (757), Expect = 4.770e-100
Identity = 139/170 (81.76%), Postives = 151/170 (88.82%), Query Frame = 1

Query:    1 VQPNERVAAVLAEGHRCFGENRVQEAAGKWPDFRERFDNIDLHLIGPLQSNKARQAFELFQTIHTLDRPKLATAFARLAQEMGHCPDLFIQVNTGEEPQKAGVMPVDVDGFVADCIALDLPVKGLMCIPPVEEEPSLHFALLAKMAARNGLNGLSMGMSSDFERAVALGA 510
            VQPNERV AVL EGHRCFGENRVQEAAGKWP FRE+F  +DLHLIGPLQ+NKARQA EL   IH++DRPKLA A ARLAQE+GHCPDLFIQVNTGEE QKAG++P D DGFVA+C  LDLP+KGLMCIPPV+EEPSLHFALLAKMA RNGLNGLSMGMS DFE A+ALGA
Sbjct:   32 VQPNERVEAVLEEGHRCFGENRVQEAAGKWPQFREKFTGVDLHLIGPLQTNKARQAMELVNVIHSVDRPKLANALARLAQELGHCPDLFIQVNTGEEEQKAGILPQDADGFVAECRKLDLPIKGLMCIPPVDEEPSLHFALLAKMAERNGLNGLSMGMSGDFESAIALGA 201

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs77513.1.1 vs.
Match: Pyridoxal (phosphate homeostasis protein n=4 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A1Y5TIU4_9RHOB)

HSP 1 Score: 296 bits (757), Expect = 5.110e-100
Identity = 138/170 (81.18%), Postives = 154/170 (90.59%), Query Frame = 1

Query:    1 VQPNERVAAVLAEGHRCFGENRVQEAAGKWPDFRERFDNIDLHLIGPLQSNKARQAFELFQTIHTLDRPKLATAFARLAQEMGHCPDLFIQVNTGEEPQKAGVMPVDVDGFVADCIALDLPVKGLMCIPPVEEEPSLHFALLAKMAARNGLNGLSMGMSSDFERAVALGA 510
            VQPN+RV AVL +GHRCFGENRVQEAAGKWPDF ERF  +DLHLIGPLQ+NKARQA EL   IH++DR KLA   ARLAQEMGHCPDLFIQVNTGEEPQKAG++P++ D F+A+C +LDLPVKGLMCIPPVEEEP+LHFALLAK+AARNGLNGLSMGMSSDFERA+ALGA
Sbjct:   32 VQPNDRVEAVLEQGHRCFGENRVQEAAGKWPDFMERFSGVDLHLIGPLQTNKARQAMELCHAIHSVDRAKLAKTLARLAQEMGHCPDLFIQVNTGEEPQKAGILPLEADDFIAECRSLDLPVKGLMCIPPVEEEPALHFALLAKIAARNGLNGLSMGMSSDFERAIALGA 201

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_M_contigs77513.1.1 vs.

BLAST of mRNA_H-canaliculatus_M_contigs77513.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Pyridoxal	8.750e-105	85.29	phosphate homeostasis protein n=1 Tax=Sulfitobacte...	[more]
Pyridoxal	9.270e-103	83.53	phosphate homeostasis protein n=1 Tax=Roseovarius ...	[more]
Pyridoxal	2.100e-101	82.94	phosphate homeostasis protein n=3 Tax=Roseobactera...	[more]
Pyridoxal	3.960e-101	84.12	phosphate homeostasis protein n=1 Tax=Roseovarius ...	[more]
Pyridoxal	1.610e-100	83.53	phosphate homeostasis protein n=7 Tax=Rhodobactera...	[more]
YggS	1.610e-100	81.76	family pyridoxal phosphate-dependent enzyme n=1 Ta...	[more]
Pyridoxal	3.250e-100	82.35	phosphate homeostasis protein n=1 Tax=Roseobacter ...	[more]
YggS	3.250e-100	82.84	family pyridoxal phosphate-dependent enzyme n=1 Ta...	[more]
Pyridoxal	4.770e-100	81.76	phosphate homeostasis protein n=16 Tax=Rhodobacter...	[more]
Pyridoxal	5.110e-100	81.18	phosphate homeostasis protein n=4 Tax=Roseobactera...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_M_contigs77513	contig	H-canaliculatus_M_contigs77513:1..510 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90	2022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Seed ortholog	1288298.rosmuc_02429
PFAMs	Ala_racemase_N
Model size	510
Max annot lvl	28211\|Alphaproteobacteria
KEGG ko	ko:K06997
Hectar predicted targeting category	other localisation
Exons	1
Evalue	2.64e-101
EggNOG OGs	COG0325@1\|root,COG0325@2\|Bacteria,1MWN7@1224\|Proteobacteria,2TR5Z@28211\|Alphaproteobacteria,46NI0@74030\|Roseovarius
Description	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
Cds size	510
COG category	S
BRITE	ko00000

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854112.3918235-CDS-H-canaliculatus_M_contigs77513:0..510	1696854112.3918235-CDS-H-canaliculatus_M_contigs77513:0..510	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs77513 1..510 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_M_contigs77513.1.1	prot_H-canaliculatus_M_contigs77513.1.1	Hapterophycus canaliculatus Oshoro7m male	polypeptide	H-canaliculatus_M_contigs77513 1..510 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-canaliculatus_M_contigs77513:1..510-
coding sequence from alignment at H-canaliculatus_M_contigs77513:1..510-

protein sequence of mRNA_H-canaliculatus_M_contigs77513.1.1

>prot_H-canaliculatus_M_contigs77513.1.1 ID=prot_H-canaliculatus_M_contigs77513.1.1|Name=mRNA_H-canaliculatus_M_contigs77513.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=170bp
VQPNERVAAVLAEGHRCFGENRVQEAAGKWPDFRERFDNIDLHLIGPLQS
NKARQAFELFQTIHTLDRPKLATAFARLAQEMGHCPDLFIQVNTGEEPQK
AGVMPVDVDGFVADCIALDLPVKGLMCIPPVEEEPSLHFALLAKMAARNG
LNGLSMGMSSDFERAVALGA

mRNA from alignment at H-canaliculatus_M_contigs77513:1..510-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-canaliculatus_M_contigs77513.1.1 ID=mRNA_H-canaliculatus_M_contigs77513.1.1|Name=mRNA_H-canaliculatus_M_contigs77513.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=510bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77513:1..510- (Hapterophycus canaliculatus Oshoro7m male)
GTCCAGCCAAACGAACGGGTCGCCGCAGTTCTGGCCGAAGGTCATCGCTG
TTTTGGTGAAAACCGCGTGCAAGAAGCGGCCGGCAAATGGCCCGATTTTC
GCGAGCGGTTCGACAACATTGATCTGCATTTGATCGGCCCACTGCAATCC
AACAAAGCCCGTCAGGCGTTTGAGCTGTTTCAGACCATCCACACGTTGGA
TCGTCCAAAATTGGCTACTGCATTTGCCCGCCTCGCGCAGGAAATGGGGC
ATTGCCCCGATCTGTTCATTCAGGTGAACACCGGCGAAGAGCCGCAAAAA
GCAGGCGTGATGCCTGTGGATGTGGACGGTTTTGTCGCCGATTGCATTGC
TCTGGATCTGCCGGTCAAAGGCTTGATGTGCATCCCACCAGTCGAGGAAG
AGCCATCGTTGCACTTTGCTTTGCTCGCCAAGATGGCCGCGCGTAATGGG
CTAAACGGATTGTCGATGGGGATGAGCAGTGATTTCGAGCGCGCCGTAGC
ACTAGGGGCG

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs77513:1..510-

>mRNA_H-canaliculatus_M_contigs77513.1.1 ID=mRNA_H-canaliculatus_M_contigs77513.1.1|Name=mRNA_H-canaliculatus_M_contigs77513.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=510bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77513:1..510- (Hapterophycus canaliculatus Oshoro7m male)
GTCCAGCCAAACGAACGGGTCGCCGCAGTTCTGGCCGAAGGTCATCGCTG
TTTTGGTGAAAACCGCGTGCAAGAAGCGGCCGGCAAATGGCCCGATTTTC
GCGAGCGGTTCGACAACATTGATCTGCATTTGATCGGCCCACTGCAATCC
AACAAAGCCCGTCAGGCGTTTGAGCTGTTTCAGACCATCCACACGTTGGA
TCGTCCAAAATTGGCTACTGCATTTGCCCGCCTCGCGCAGGAAATGGGGC
ATTGCCCCGATCTGTTCATTCAGGTGAACACCGGCGAAGAGCCGCAAAAA
GCAGGCGTGATGCCTGTGGATGTGGACGGTTTTGTCGCCGATTGCATTGC
TCTGGATCTGCCGGTCAAAGGCTTGATGTGCATCCCACCAGTCGAGGAAG
AGCCATCGTTGCACTTTGCTTTGCTCGCCAAGATGGCCGCGCGTAATGGG
CTAAACGGATTGTCGATGGGGATGAGCAGTGATTTCGAGCGCGCCGTAGC
ACTAGGGGCG