mRNA_H-canaliculatus_M_contigs7750.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7750.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7750.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7750.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY9_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 2.930e-18
Identity = 51/81 (62.96%), Postives = 61/81 (75.31%), Query Frame = 1
Query:  388 LHLAVINAGKRGSAEVVDLLLRRGADEKAMSSNGQTAMDMIGAGEIEDEDVLAEEDVERVRLLLSHAPADRAWRRHGFLVM 630
            LHL    AG  G+AE+VDLLLRRGADE A+S NG TA DM+   + E+ D LAE DV+RVR LL+ APADRAWRR GFL++
Sbjct:  626 LHLVAAKAGSPGTAEMVDLLLRRGADETAVSENGHTAADMVVL-KTEESDSLAE-DVDRVRKLLARAPADRAWRRRGFLIL 704          
BLAST of mRNA_H-canaliculatus_M_contigs7750.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXK5_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 5.850e-16
Identity = 46/75 (61.33%), Postives = 59/75 (78.67%), Query Frame = 1
Query:  409 AGKRGSAEVVDLLLRRGADEKAMSSNGQTAMDMIGAGEIEDEDVLAEEDVERVRLLLSHAPADRAWRRHGFLVMC 633
            AG++G+AEVV+ LLR GADE   +  G  A+DMIG  ++E+ED L E DVERVR LL++APADRAWRR G+L+MC
Sbjct:  254 AGRQGAAEVVNSLLRAGADETIANVQGNKAVDMIGE-DVEEEDRLTE-DVERVRELLANAPADRAWRRRGYLIMC 326          
BLAST of mRNA_H-canaliculatus_M_contigs7750.1.1 vs.
Match: Ankyrin (repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYD0_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 1.140e-12
Identity = 43/75 (57.33%), Postives = 52/75 (69.33%), Query Frame = 1
Query:  409 AGKRGSAEVVDLLLRRGADEKAMSSNGQTAMDMIGAGEIEDEDVLAEEDVERVRLLLSHAPADRAWRRHGFLVMC 633
            AG++GSAE+VDLLLRRGADE     NGQ   D +G   +E  DVL   +V  V  LL++APADRAWRR G LV+C
Sbjct:  272 AGRQGSAELVDLLLRRGADETTPDRNGQQPADRVGHC-MELGDVLLGHEVVLVHELLANAPADRAWRRRGLLVLC 345          
BLAST of mRNA_H-canaliculatus_M_contigs7750.1.1 vs.
Match: Ankyrin (repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U1_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 1.910e-12
Identity = 42/73 (57.53%), Postives = 48/73 (65.75%), Query Frame = 1
Query:  415 KRGSAEVVDLLLRRGADEKAMSSNGQTAMDMIGAGEIEDEDVLAEEDVERVRLLLSHAPADRAWRRHGFLVMC 633
            + GSA+VVDLLLR GADE  +S  G+TA D IG       D    ED ER R LL+ APADRAWRR G LV+C
Sbjct:  286 RHGSAQVVDLLLRWGADETIVSKQGETAADSIGTRRCHRTDP---EDDERARSLLARAPADRAWRRRGLLVLC 355          
BLAST of mRNA_H-canaliculatus_M_contigs7750.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU3_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 3.170e-12
Identity = 40/82 (48.78%), Postives = 57/82 (69.51%), Query Frame = 1
Query:  388 LHLAVINAGKRGSAEVVDLLLRRGADEKAMSSNGQTAMDMIGAGEIEDEDVLAEEDVERVRLLLSHAPADRAWRRHGFLVMC 633
            L +A   AG++G   +VD+LLR GADE A++ +G+TA +++G         L ++D+ERVR LL +APADRAWRR G LV+C
Sbjct:  258 LIIAARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDLERVRDLLENAPADRAWRRRGLLVLC 339          
BLAST of mRNA_H-canaliculatus_M_contigs7750.1.1 vs.
Match: Ankyrin (repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKL4_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 8.720e-12
Identity = 44/82 (53.66%), Postives = 54/82 (65.85%), Query Frame = 1
Query:  388 LHLAVINAGKRGSAEVVDLLLRRGADEKAMSSNGQTAMDMIGAGEIEDEDVLAEEDVERVRLLLSHAPADRAWRRHGFLVMC 633
            L      AGK+G  EVVDLLLR GADE  ++ NG  A D IG  ++ +ED + EE  E VR LL++APADRAWRR   LV+C
Sbjct:  266 LEYVATRAGKQGIVEVVDLLLRWGADETHVAGNGMRAADAIGM-KVPEEDRIPEE-FEGVRKLLANAPADRAWRRRCSLVLC 345          
BLAST of mRNA_H-canaliculatus_M_contigs7750.1.1 vs.
Match: Similar (to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ25_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 1.090e-9
Identity = 40/64 (62.50%), Postives = 47/64 (73.44%), Query Frame = 1
Query:  388 LHLAVINAGKRGSAEVVDLLLRRGADEKAMSSNGQTAMDMIGAGEIEDEDVLAEEDVERVRLLL 579
            LHL    AG  G+AE+VDLLLRRGADE A+S NG TA DM+G  + E+ D LAE DV+RVR LL
Sbjct:  463 LHLVAAKAGSPGTAEMVDLLLRRGADETAVSENGHTAADMVGL-KTEESDSLAE-DVDRVRKLL 524          
BLAST of mRNA_H-canaliculatus_M_contigs7750.1.1 vs.
Match: Ankyrin (repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G137_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 1.220e-9
Identity = 38/73 (52.05%), Postives = 45/73 (61.64%), Query Frame = 1
Query:  415 KRGSAEVVDLLLRRGADEKAMSSNGQTAMDMIGAGEIEDEDVLAEEDVERVRLLLSHAPADRAWRRHGFLVMC 633
            +RGS +VV LLLR GADE  +   G+TA D IG       +     D ER R LL+ APADRAWRR G LV+C
Sbjct:  282 RRGSVQVVGLLLRWGADETIVCKQGKTAADRIGTRRFPSTEP---GDDERARSLLTRAPADRAWRRRGLLVLC 351          
BLAST of mRNA_H-canaliculatus_M_contigs7750.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB27_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 4.810e-9
Identity = 38/84 (45.24%), Postives = 55/84 (65.48%), Query Frame = 1
Query:  388 LHLAVINAGKRGSAEVVDLLLRRGADEKAMSSNGQTAMDMIGA---GEIEDEDVLAEEDVERVRLLLSHAPADRAWRRHGFLVM 630
            LH+A +++    +   V+LLLR GADE   + NG    D+IG    G++ DEDV A  D +R+R +L+ APADR+WRR G+LV+
Sbjct:  355 LHVACMHS----NVAAVELLLRWGADETCSNDNGDVPADVIGVYDRGDVNDEDVKA--DHKRIRRMLARAPADRSWRRRGWLVL 432          
BLAST of mRNA_H-canaliculatus_M_contigs7750.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMJ6_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 8.170e-9
Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = 1
Query:  409 AGKRGSAEVVDLLLRRGADEKAMSSNGQTAMDMIGAGEIEDEDVLAEEDVERVRLLLSHAPADRAWRRHGFLVMC 633
            AG  G  EVVD LLR GADE  + S G+ A+DMI + E+    +  E+D +RVR LL +A ADRAW R  +LV+C
Sbjct:   95 AGFEGDTEVVDSLLRSGADETILDSEGRAAVDMI-SWEVAGLHLSGEQD-DRVRDLLVNAQADRAWHRRRYLVLC 167          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7750.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized2.930e-1862.96protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.850e-1661.33protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Ankyrin1.140e-1257.33repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID... [more]
Ankyrin1.910e-1257.53repeat protein n=1 Tax=Ectocarpus siliculosus TaxI... [more]
Uncharacterized3.170e-1248.78protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Ankyrin8.720e-1253.66repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID... [more]
Similar1.090e-962.50to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosu... [more]
Ankyrin1.220e-952.05repeat protein n=1 Tax=Ectocarpus siliculosus TaxI... [more]
Uncharacterized4.810e-945.24protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized8.170e-950.67protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7750contigH-canaliculatus_M_contigs7750:1175..2110 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G6X8
PFAMsAnk_2,Ank_4
Model size633
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.24e-14
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Descriptionspectrin binding
Cds size615
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854112.259588-CDS-H-canaliculatus_M_contigs7750:1174..14281696854112.259588-CDS-H-canaliculatus_M_contigs7750:1174..1428Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7750 1175..1428 -
1696854112.2741292-CDS-H-canaliculatus_M_contigs7750:1731..20921696854112.2741292-CDS-H-canaliculatus_M_contigs7750:1731..2092Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7750 1732..2092 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854112.289413-UTR-H-canaliculatus_M_contigs7750:2092..21101696854112.289413-UTR-H-canaliculatus_M_contigs7750:2092..2110Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs7750 2093..2110 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7750.1.1prot_H-canaliculatus_M_contigs7750.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7750 1175..2092 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7750.1.1

>prot_H-canaliculatus_M_contigs7750.1.1 ID=prot_H-canaliculatus_M_contigs7750.1.1|Name=mRNA_H-canaliculatus_M_contigs7750.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=205bp
MGMTRAFLAAGADVNLRCGRGMSALDWSSVGGHVETVTVLIEHGAEVNAA
DASGWTALHFGAAAGKAEVVRLLCSSGADVDKADGSGSTPLLEATRGGHA
AAARALLGAGADGSLRSAQDETPLHLAVINAGKRGSAEVVDLLLRRGADE
KAMSSNGQTAMDMIGAGEIEDEDVLAEEDVERVRLLLSHAPADRAWRRHG
FLVMC
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mRNA from alignment at H-canaliculatus_M_contigs7750:1175..2110-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7750.1.1 ID=mRNA_H-canaliculatus_M_contigs7750.1.1|Name=mRNA_H-canaliculatus_M_contigs7750.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=936bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7750:1175..2110- (Hapterophycus canaliculatus Oshoro7m male)
GCGGCCGGTATAGGTCTCATGGGGATGACCAGAGCTTTCTTGGCCGCCGG TGCGGACGTCAACCTTCGCTGCGGCAGGGGCATGTCGGCCCTGGATTGGT CCTCCGTTGGCGGCCACGTCGAAACCGTGACGGTGCTCATCGAACACGGG GCGGAGGTGAACGCGGCCGACGCAAGCGGCTGGACAGCGCTCCACTTCGG GGCCGCCGCCGGCAAGGCGGAGGTCGTGCGGCTATTGTGCTCCAGCGGGG CCGACGTGGACAAGGCGGATGGCTCGGGGTCGACGCCGCTCCTAGAGGCG ACTCGCGGTGGTCACGCCGCCGCGGCACGAGCCCTCCTGGGCGCGGGAGC CGACGGCAGCCTCCGGAGCGCACAAGACGGTTGGTCTTCGCTTGACTGGG CCGCCGCTTCCACGGGGCATCCCGGTGTCCTGGTCGAGCTCATCAACCAA GGGGTCGACGTGAACACTGCGACCGACATCGGCGTGACGGCGTTGCACAT CGGCGCGGTTAGTGACAACGCGGAGGCAATCGACTTGCTCGTCGGTGCCG GTGCCGCCTTGGAGGCCGAGGACGCGACCGGCGCCTCACCCCTCTGCGGC GCCGCGGCGAAGAGCAACCTCGCGGCCGCGCTCGCCCTTTTGAGGCACGG CGCGAGCGTCAGCAAGCAGAACGCGGTTGGAGAAACGCCTCTGCACCTTG CCGTAATCAACGCCGGCAAGCGCGGATCGGCGGAGGTGGTGGACCTTTTG CTCAGACGAGGAGCAGACGAGAAGGCGATGAGCAGCAATGGACAGACGGC GATGGACATGATCGGCGCTGGCGAGATCGAAGACGAAGACGTTCTAGCGG AGGAGGATGTCGAGCGCGTCCGACTGCTGTTGTCGCATGCTCCGGCCGAC AGGGCGTGGCGTCGGCACGGCTTCCTTGTCATGTGC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7750:1175..2110-

>mRNA_H-canaliculatus_M_contigs7750.1.1 ID=mRNA_H-canaliculatus_M_contigs7750.1.1|Name=mRNA_H-canaliculatus_M_contigs7750.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=615bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7750:1175..2110- (Hapterophycus canaliculatus Oshoro7m male)
ATGGGGATGACCAGAGCTTTCTTGGCCGCCGGTGCGGACGTCAACCTTCG
CTGCGGCAGGGGCATGTCGGCCCTGGATTGGTCCTCCGTTGGCGGCCACG
TCGAAACCGTGACGGTGCTCATCGAACACGGGGCGGAGGTGAACGCGGCC
GACGCAAGCGGCTGGACAGCGCTCCACTTCGGGGCCGCCGCCGGCAAGGC
GGAGGTCGTGCGGCTATTGTGCTCCAGCGGGGCCGACGTGGACAAGGCGG
ATGGCTCGGGGTCGACGCCGCTCCTAGAGGCGACTCGCGGTGGTCACGCC
GCCGCGGCACGAGCCCTCCTGGGCGCGGGAGCCGACGGCAGCCTCCGGAG
CGCACAAGACGAAACGCCTCTGCACCTTGCCGTAATCAACGCCGGCAAGC
GCGGATCGGCGGAGGTGGTGGACCTTTTGCTCAGACGAGGAGCAGACGAG
AAGGCGATGAGCAGCAATGGACAGACGGCGATGGACATGATCGGCGCTGG
CGAGATCGAAGACGAAGACGTTCTAGCGGAGGAGGATGTCGAGCGCGTCC
GACTGCTGTTGTCGCATGCTCCGGCCGACAGGGCGTGGCGTCGGCACGGC
TTCCTTGTCATGTGC
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