mRNA_H-canaliculatus_M_contigs7750.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7750.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY9_9PHAE) HSP 1 Score: 92.8 bits (229), Expect = 2.930e-18 Identity = 51/81 (62.96%), Postives = 61/81 (75.31%), Query Frame = 1
Query: 388 LHLAVINAGKRGSAEVVDLLLRRGADEKAMSSNGQTAMDMIGAGEIEDEDVLAEEDVERVRLLLSHAPADRAWRRHGFLVM 630
LHL AG G+AE+VDLLLRRGADE A+S NG TA DM+ + E+ D LAE DV+RVR LL+ APADRAWRR GFL++
Sbjct: 626 LHLVAAKAGSPGTAEMVDLLLRRGADETAVSENGHTAADMVVL-KTEESDSLAE-DVDRVRKLLARAPADRAWRRRGFLIL 704
BLAST of mRNA_H-canaliculatus_M_contigs7750.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXK5_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 5.850e-16 Identity = 46/75 (61.33%), Postives = 59/75 (78.67%), Query Frame = 1
Query: 409 AGKRGSAEVVDLLLRRGADEKAMSSNGQTAMDMIGAGEIEDEDVLAEEDVERVRLLLSHAPADRAWRRHGFLVMC 633
AG++G+AEVV+ LLR GADE + G A+DMIG ++E+ED L E DVERVR LL++APADRAWRR G+L+MC
Sbjct: 254 AGRQGAAEVVNSLLRAGADETIANVQGNKAVDMIGE-DVEEEDRLTE-DVERVRELLANAPADRAWRRRGYLIMC 326
BLAST of mRNA_H-canaliculatus_M_contigs7750.1.1 vs.
Match: Ankyrin (repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYD0_ECTSI) HSP 1 Score: 76.3 bits (186), Expect = 1.140e-12 Identity = 43/75 (57.33%), Postives = 52/75 (69.33%), Query Frame = 1
Query: 409 AGKRGSAEVVDLLLRRGADEKAMSSNGQTAMDMIGAGEIEDEDVLAEEDVERVRLLLSHAPADRAWRRHGFLVMC 633
AG++GSAE+VDLLLRRGADE NGQ D +G +E DVL +V V LL++APADRAWRR G LV+C
Sbjct: 272 AGRQGSAELVDLLLRRGADETTPDRNGQQPADRVGHC-MELGDVLLGHEVVLVHELLANAPADRAWRRRGLLVLC 345
BLAST of mRNA_H-canaliculatus_M_contigs7750.1.1 vs.
Match: Ankyrin (repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U1_ECTSI) HSP 1 Score: 75.5 bits (184), Expect = 1.910e-12 Identity = 42/73 (57.53%), Postives = 48/73 (65.75%), Query Frame = 1
Query: 415 KRGSAEVVDLLLRRGADEKAMSSNGQTAMDMIGAGEIEDEDVLAEEDVERVRLLLSHAPADRAWRRHGFLVMC 633
+ GSA+VVDLLLR GADE +S G+TA D IG D ED ER R LL+ APADRAWRR G LV+C
Sbjct: 286 RHGSAQVVDLLLRWGADETIVSKQGETAADSIGTRRCHRTDP---EDDERARSLLARAPADRAWRRRGLLVLC 355
BLAST of mRNA_H-canaliculatus_M_contigs7750.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU3_9PHAE) HSP 1 Score: 75.1 bits (183), Expect = 3.170e-12 Identity = 40/82 (48.78%), Postives = 57/82 (69.51%), Query Frame = 1
Query: 388 LHLAVINAGKRGSAEVVDLLLRRGADEKAMSSNGQTAMDMIGAGEIEDEDVLAEEDVERVRLLLSHAPADRAWRRHGFLVMC 633
L +A AG++G +VD+LLR GADE A++ +G+TA +++G L ++D+ERVR LL +APADRAWRR G LV+C
Sbjct: 258 LIIAARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDLERVRDLLENAPADRAWRRRGLLVLC 339
BLAST of mRNA_H-canaliculatus_M_contigs7750.1.1 vs.
Match: Ankyrin (repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKL4_ECTSI) HSP 1 Score: 73.6 bits (179), Expect = 8.720e-12 Identity = 44/82 (53.66%), Postives = 54/82 (65.85%), Query Frame = 1
Query: 388 LHLAVINAGKRGSAEVVDLLLRRGADEKAMSSNGQTAMDMIGAGEIEDEDVLAEEDVERVRLLLSHAPADRAWRRHGFLVMC 633
L AGK+G EVVDLLLR GADE ++ NG A D IG ++ +ED + EE E VR LL++APADRAWRR LV+C
Sbjct: 266 LEYVATRAGKQGIVEVVDLLLRWGADETHVAGNGMRAADAIGM-KVPEEDRIPEE-FEGVRKLLANAPADRAWRRRCSLVLC 345
BLAST of mRNA_H-canaliculatus_M_contigs7750.1.1 vs.
Match: Similar (to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ25_ECTSI) HSP 1 Score: 67.8 bits (164), Expect = 1.090e-9 Identity = 40/64 (62.50%), Postives = 47/64 (73.44%), Query Frame = 1
Query: 388 LHLAVINAGKRGSAEVVDLLLRRGADEKAMSSNGQTAMDMIGAGEIEDEDVLAEEDVERVRLLL 579
LHL AG G+AE+VDLLLRRGADE A+S NG TA DM+G + E+ D LAE DV+RVR LL
Sbjct: 463 LHLVAAKAGSPGTAEMVDLLLRRGADETAVSENGHTAADMVGL-KTEESDSLAE-DVDRVRKLL 524
BLAST of mRNA_H-canaliculatus_M_contigs7750.1.1 vs.
Match: Ankyrin (repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G137_ECTSI) HSP 1 Score: 67.4 bits (163), Expect = 1.220e-9 Identity = 38/73 (52.05%), Postives = 45/73 (61.64%), Query Frame = 1
Query: 415 KRGSAEVVDLLLRRGADEKAMSSNGQTAMDMIGAGEIEDEDVLAEEDVERVRLLLSHAPADRAWRRHGFLVMC 633
+RGS +VV LLLR GADE + G+TA D IG + D ER R LL+ APADRAWRR G LV+C
Sbjct: 282 RRGSVQVVGLLLRWGADETIVCKQGKTAADRIGTRRFPSTEP---GDDERARSLLTRAPADRAWRRRGLLVLC 351
BLAST of mRNA_H-canaliculatus_M_contigs7750.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB27_ECTSI) HSP 1 Score: 65.9 bits (159), Expect = 4.810e-9 Identity = 38/84 (45.24%), Postives = 55/84 (65.48%), Query Frame = 1
Query: 388 LHLAVINAGKRGSAEVVDLLLRRGADEKAMSSNGQTAMDMIGA---GEIEDEDVLAEEDVERVRLLLSHAPADRAWRRHGFLVM 630
LH+A +++ + V+LLLR GADE + NG D+IG G++ DEDV A D +R+R +L+ APADR+WRR G+LV+
Sbjct: 355 LHVACMHS----NVAAVELLLRWGADETCSNDNGDVPADVIGVYDRGDVNDEDVKA--DHKRIRRMLARAPADRSWRRRGWLVL 432
BLAST of mRNA_H-canaliculatus_M_contigs7750.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMJ6_9PHAE) HSP 1 Score: 63.2 bits (152), Expect = 8.170e-9 Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = 1
Query: 409 AGKRGSAEVVDLLLRRGADEKAMSSNGQTAMDMIGAGEIEDEDVLAEEDVERVRLLLSHAPADRAWRRHGFLVMC 633
AG G EVVD LLR GADE + S G+ A+DMI + E+ + E+D +RVR LL +A ADRAW R +LV+C
Sbjct: 95 AGFEGDTEVVDSLLRSGADETILDSEGRAAVDMI-SWEVAGLHLSGEQD-DRVRDLLVNAQADRAWHRRRYLVLC 167 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7750.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs7750.1.1 >prot_H-canaliculatus_M_contigs7750.1.1 ID=prot_H-canaliculatus_M_contigs7750.1.1|Name=mRNA_H-canaliculatus_M_contigs7750.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=205bp MGMTRAFLAAGADVNLRCGRGMSALDWSSVGGHVETVTVLIEHGAEVNAAback to top mRNA from alignment at H-canaliculatus_M_contigs7750:1175..2110- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs7750.1.1 ID=mRNA_H-canaliculatus_M_contigs7750.1.1|Name=mRNA_H-canaliculatus_M_contigs7750.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=936bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7750:1175..2110- (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7750:1175..2110- >mRNA_H-canaliculatus_M_contigs7750.1.1 ID=mRNA_H-canaliculatus_M_contigs7750.1.1|Name=mRNA_H-canaliculatus_M_contigs7750.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=615bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7750:1175..2110- (Hapterophycus canaliculatus Oshoro7m male)back to top |