mRNA_H-canaliculatus_M_contigs77471.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs77471.1.1
Unique NamemRNA_H-canaliculatus_M_contigs77471.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs77471.1.1 vs.
Match: APC1_C (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYG2_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 2.230e-20
Identity = 52/80 (65.00%), Postives = 54/80 (67.50%), Query Frame = 1 
Query:    1 GDSHDVTLPCEARLLQPLGEGLLIQRFAGGNGDGSEFSSAAAYGGEDEQED--DGLDPLFSVPSLFTLLHPLDELRPVAL 234
            GDSHDVTLPCEARLLQ LGEGLL+QR+AG                        DGLDP FSVPSLFTLLHPLDELRPVAL
Sbjct:  181 GDSHDVTLPCEARLLQSLGEGLLVQRYAGXXXXXXXXXXXXXXXXXXXXXXXXDGLDPSFSVPSLFTLLHPLDELRPVAL 260
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs77471.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
APC1_C2.230e-2065.00domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs77471contigH-canaliculatus_M_contigs77471:12..245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Model size234
Hectar predicted targeting categoryother localisation
Exons1
Cds size234
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854112.175528-CDS-H-canaliculatus_M_contigs77471:11..2451696854112.175528-CDS-H-canaliculatus_M_contigs77471:11..245Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs77471 12..245 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs77471.1.1prot_H-canaliculatus_M_contigs77471.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs77471 12..245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs77471.1.1

>prot_H-canaliculatus_M_contigs77471.1.1 ID=prot_H-canaliculatus_M_contigs77471.1.1|Name=mRNA_H-canaliculatus_M_contigs77471.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=78bp
GDSHDVTLPCEARLLQPLGEGLLIQRFAGGNGDGSEFSSAAAYGGEDEQE
DDGLDPLFSVPSLFTLLHPLDELRPVAL
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mRNA from alignment at H-canaliculatus_M_contigs77471:12..245+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs77471.1.1 ID=mRNA_H-canaliculatus_M_contigs77471.1.1|Name=mRNA_H-canaliculatus_M_contigs77471.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=234bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77471:12..245+ (Hapterophycus canaliculatus Oshoro7m male)
GGGGACTCCCACGACGTCACCCTTCCCTGCGAGGCCCGCCTCTTGCAGCC
TCTCGGCGAGGGTTTGCTGATCCAACGATTTGCTGGGGGGAACGGCGACG
GTTCAGAGTTCTCCTCTGCCGCGGCCTACGGGGGGGAAGACGAGCAAGAG
GACGACGGCTTGGACCCGTTGTTCTCGGTGCCGTCCCTGTTCACCCTCCT
CCACCCGCTTGACGAGCTTCGACCCGTGGCGCTC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs77471:12..245+

>mRNA_H-canaliculatus_M_contigs77471.1.1 ID=mRNA_H-canaliculatus_M_contigs77471.1.1|Name=mRNA_H-canaliculatus_M_contigs77471.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=234bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77471:12..245+ (Hapterophycus canaliculatus Oshoro7m male)
GGGGACTCCCACGACGTCACCCTTCCCTGCGAGGCCCGCCTCTTGCAGCC
TCTCGGCGAGGGTTTGCTGATCCAACGATTTGCTGGGGGGAACGGCGACG
GTTCAGAGTTCTCCTCTGCCGCGGCCTACGGGGGGGAAGACGAGCAAGAG
GACGACGGCTTGGACCCGTTGTTCTCGGTGCCGTCCCTGTTCACCCTCCT
CCACCCGCTTGACGAGCTTCGACCCGTGGCGCTC
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