mRNA_H-canaliculatus_M_contigs77441.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs77441.1.1
Unique NamemRNA_H-canaliculatus_M_contigs77441.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs77441.1.1 vs.
Match: Cupin ((Fragment) n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A3B9BWS9_9RHOB)

HSP 1 Score: 254 bits (650), Expect = 5.450e-83
Identity = 119/164 (72.56%), Postives = 135/164 (82.32%), Query Frame = 1
Query:    1 VPDRVHYHTIGFQLIFCYRGWVRLVYEDQGEPFILSAGDCVIQPPEIRHRVLESSDNLEVVEIGVPSDHETTIDHSMELPTSTYKPDRMFSGQRFCHSKVAEASWQPFRINGFNYRETGINEATGGLANVVVARFNGNTPSPCTHNSDILFTYVLEGSMTLTGE 492
            VPD VHYHTIGFQLI+CYRGWVRLVYEDQG  FIL+AGDCVIQPPEIRHRVLE+SDN+EVVEIGVP+DHETTIDH MELP     P+R FSGQ F   ++ +ASWQP+RI GF +R+TGI   T G+ANV VARF G  P P  H+SDILFT++LEG MTLTGE
Sbjct:   62 VPDMVHYHTIGFQLIYCYRGWVRLVYEDQGPEFILNAGDCVIQPPEIRHRVLEASDNVEVVEIGVPADHETTIDHDMELPNDILNPNRKFSGQMFVRHQLKDASWQPWRIAGFEHRDTGIFNGTQGVANVQVARFKGGRPKPTRHSSDILFTFILEGRMTLTGE 225          
BLAST of mRNA_H-canaliculatus_M_contigs77441.1.1 vs.
Match: Cupin (n=1 Tax=Chromatiales bacterium (ex Bugula neritina AB1) TaxID=1868282 RepID=A0A1E4ZSA8_9GAMM)

HSP 1 Score: 249 bits (635), Expect = 2.600e-79
Identity = 115/170 (67.65%), Postives = 141/170 (82.94%), Query Frame = 1
Query:    1 VPDRVHYHTIGFQLIFCYRGWVRLVYEDQGEPFILSAGDCVIQPPEIRHRVLESSDNLEVVEIGVPSDHETTIDHSMELPTSTYKPDRMFSGQRFCHSKVAEASWQPFRINGFNYRETGINEATGGLANVVVARFNG--NTPSPCTHNSDILFTYVLEGSMTLTGEDNQA 504
            VPD VHYHT+GFQLI+CYRGWVRLVYEDQG  FIL+AGDCVIQPPEIRHRVLESSDNLEV+EIGVP++H TTIDH+MELPT+ + P R+F GQRFCH ++  A WQ  R++GF  R+TGI +ATGG+ANV V +  G  NT + C+H+SDILF++++EGS+TL  ED  A
Sbjct:  161 VPDMVHYHTVGFQLIYCYRGWVRLVYEDQGPAFILNAGDCVIQPPEIRHRVLESSDNLEVIEIGVPAEHITTIDHNMELPTAEFNPSRIFGGQRFCHHQLENARWQAARLDGFEVRDTGILDATGGVANVQVYKATGAQNTAAICSHDSDILFSFLMEGSVTLEAEDEPA 330          
BLAST of mRNA_H-canaliculatus_M_contigs77441.1.1 vs.
Match: cupin (domain-containing protein n=1 Tax=Winogradskyella sp. E313 TaxID=2816852 RepID=UPI001D0CA9ED)

HSP 1 Score: 245 bits (625), Expect = 5.590e-78
Identity = 118/171 (69.01%), Postives = 137/171 (80.12%), Query Frame = 1
Query:    1 VPDRVHYHTIGFQLIFCYRGWVRLVYEDQGEPFILSAGDCVIQPPEIRHRVLESSDNLEVVEIGVPSDHETTIDHSMELPTSTYKPDRMFSGQRFCHSKVAEASWQPFRINGFNYRETGINEATGGLANVVVAR-FNGNTPSPCT-HNSDILFTYVLEGSMTLTGEDNQAH 507
            VPD VHYHTIGFQLIFCY+GWV+LVYEDQGEPFIL+AGDCV QPPEIRHRVLE+SDNLEV+EIGVPSDH TTIDH MELP   Y P+R F GQRFCH K AEA W+P+RI+GF +R+TGINEAT   A+V V R  N       T H++DILFT+V+EG+M L  E+ + H
Sbjct:  152 VPDVVHYHTIGFQLIFCYKGWVKLVYEDQGEPFILNAGDCVTQPPEIRHRVLEASDNLEVIEIGVPSDHMTTIDHDMELPNGIYNPNREFQGQRFCHHKAAEAIWKPWRISGFEHRDTGINEATKQKASVNVIRVLNSAIEQRYTNHDTDILFTFVMEGNMQLVAENYETH 322          
BLAST of mRNA_H-canaliculatus_M_contigs77441.1.1 vs.
Match: Cupin (n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A2A4QHS8_9BACT)

HSP 1 Score: 236 bits (601), Expect = 1.240e-74
Identity = 110/169 (65.09%), Postives = 132/169 (78.11%), Query Frame = 1
Query:    1 VPDRVHYHTIGFQLIFCYRGWVRLVYEDQGEPFILSAGDCVIQPPEIRHRVLESSDNLEVVEIGVPSDHETTIDHSMELPTSTYKPDRMFSGQRFCHSKVAEASWQPFRINGFNYRETGINEATGGLANVVVARFNGNTPSP--CTHNSDILFTYVLEGSMTLTGEDNQ 501
            VPD VHYHTIGFQLIFCYRGWV+LVYEDQG  FIL+AGDCV QPP+IRHRVLE+SDNLEV+EIGVP+DH TTIDH M LPTS Y PDR F GQ+FCH +V EA W  +++ GF +R+TGI  AT G+ +V VAR   NT      TH++DILFT+++EG M L  +D +
Sbjct:  130 VPDMVHYHTIGFQLIFCYRGWVKLVYEDQGPAFILNAGDCVTQPPQIRHRVLEASDNLEVIEIGVPADHMTTIDHDMNLPTSEYLPDREFQGQKFCHHQVDEAQWNLWKMQGFEFRDTGIEIATAGMVSVHVARVLENTKKTQTITHDADILFTFIMEGEMMLGADDRE 298          
BLAST of mRNA_H-canaliculatus_M_contigs77441.1.1 vs.
Match: Mannose-6-phosphate (isomerase, cupin superfamily n=11 Tax=Pseudovibrio TaxID=258255 RepID=A0A1H0Z1F2_9HYPH)

HSP 1 Score: 236 bits (603), Expect = 1.610e-74
Identity = 111/171 (64.91%), Postives = 135/171 (78.95%), Query Frame = 1
Query:    1 VPDRVHYHTIGFQLIFCYRGWVRLVYEDQGEPFILSAGDCVIQPPEIRHRVLESSDNLEVVEIGVPSDHETTIDHSMELPTSTYKPDRMFSGQRFCHSKVAEASWQPFRINGFNYRETGINEATGGLANVVVARFN-GNTPSPCTHNSDILFTYVLEGSMTLTGEDNQAHE 510
            VPD VHYHT+GFQLIFCY GWVRLVYEDQGEPFIL AGDCVIQPPEIRHRVLESS  LEV+EIGVP++H T+IDH M+LP ++  P+R F GQ+F   ++  A+WQPFR+ GF  R+TGI  AT  +ANV VAR   G T +  +H SDILF++V+EGS+TL  E+ +AHE
Sbjct:  160 VPDMVHYHTVGFQLIFCYHGWVRLVYEDQGEPFILKAGDCVIQPPEIRHRVLESSGELEVIEIGVPAEHVTSIDHEMDLPNTSVNPEREFQGQKFVRHQLDSATWQPFRLEGFECRDTGIGTATKQVANVQVARVTTGPTGAVTSHTSDILFSFVMEGSVTLVNEEGKAHE 330          
BLAST of mRNA_H-canaliculatus_M_contigs77441.1.1 vs.
Match: Cupin (domain-containing protein n=1 Tax=Flavobacteriaceae bacterium PRS1 TaxID=2483459 RepID=A0A3M7KL28_9FLAO)

HSP 1 Score: 235 bits (600), Expect = 3.530e-74
Identity = 112/166 (67.47%), Postives = 131/166 (78.92%), Query Frame = 1
Query:    1 VPDRVHYHTIGFQLIFCYRGWVRLVYEDQGEPFILSAGDCVIQPPEIRHRVLESSDNLEVVEIGVPSDHETTIDHSMELPTSTYKPDRMFSGQRFCHSKVAEASWQPFRINGFNYRETGINEATGGLANVVVAR-FNGNT-PSPCTHNSDILFTYVLEGSMTLTGE 492
            VPD VHYHTIGFQLIFCY GWV+LVYEDQG PFIL AGDCV QPPEIRHRVLE+SDNLEV+EIGVP+ H TTIDH MELPT  Y P+R F GQ FCH KV EA W+P+RI GF +R+TGIN AT  +A+V +AR  N N  P   +H++DILFT+V++G M L  +
Sbjct:  154 VPDMVHYHTIGFQLIFCYSGWVKLVYEDQGPPFILEAGDCVTQPPEIRHRVLEASDNLEVIEIGVPAAHLTTIDHDMELPTKEYHPEREFQGQVFCHHKVKEAVWKPWRIKGFEFRDTGINTATKAVASVQIARPLNTNAKPQLISHDTDILFTFVMQGEMELAAD 319          
BLAST of mRNA_H-canaliculatus_M_contigs77441.1.1 vs.
Match: Quercetin (dioxygenase-like cupin family protein n=5 Tax=Sulfitobacter geojensis TaxID=1342299 RepID=A0A7Z0CEU0_9RHOB)

HSP 1 Score: 235 bits (599), Expect = 6.300e-74
Identity = 110/165 (66.67%), Postives = 136/165 (82.42%), Query Frame = 1
Query:    1 VPDRVHYHTIGFQLIFCYRGWVRLVYEDQGEPFILSAGDCVIQPPEIRHRVLESSDNLEVVEIGVPSDHETTIDHSMELPTSTYKPDRMFSGQRFCHSKVAEASWQPFRINGFNYRETGINEATGGLANVVVARFNGNTPSP-CTHNSDILFTYVLEGSMTLTGE 492
            VPD VHYHT+GFQLIFCYRGWVRLVYEDQG+PFIL+AGDCVIQPP+IRHRVLE+SDN+EV+E+GVP++H TTIDH MELP  T  PDR +SG +F H K AEA W P+RI G++ R+TGI   TGG+A V VAR +G+  +P  +H++DILFT+V EG++TL  E
Sbjct:  160 VPDMVHYHTVGFQLIFCYRGWVRLVYEDQGDPFILNAGDCVIQPPQIRHRVLEASDNVEVLELGVPAEHVTTIDHEMELPNGTINPDRDWSGSKFVHHKEAEAVWAPWRIPGWDARDTGIGAGTGGVAGVTVARPDGSGTTPWSSHDTDILFTFVKEGTLTLEVE 324          
BLAST of mRNA_H-canaliculatus_M_contigs77441.1.1 vs.
Match: Cupin (domain-containing protein n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) TaxID=760192 RepID=F4L659_HALH1)

HSP 1 Score: 234 bits (597), Expect = 8.930e-74
Identity = 111/163 (68.10%), Postives = 131/163 (80.37%), Query Frame = 1
Query:    1 VPDRVHYHTIGFQLIFCYRGWVRLVYEDQGEPFILSAGDCVIQPPEIRHRVLESSDNLEVVEIGVPSDHETTIDHSMELPTSTYKPDRMFSGQRFCHSKVAEASWQPFRINGFNYRETGINEATGGLANVVVAR--FNGNTPSPCTHNSDILFTYVLEGSMTL 483
            VPD VHYHTIGFQLIFCYRGWV+LVYEDQG PFIL AGDCV QPPEIRH+VLE+SDNLEV+EIGVP+ H TTIDH MELPT  + PDR F GQ FCH ++ EASW P+RI GF +R+TGIN AT G+A+V V R      TP   +HN+DILF++VL+G++ L
Sbjct:  155 VPDMVHYHTIGFQLIFCYRGWVKLVYEDQGPPFILHAGDCVTQPPEIRHQVLEASDNLEVIEIGVPAMHMTTIDHEMELPTPQFLPDRKFQGQTFCHHRLVEASWSPWRIKGFEHRDTGINVATKGVASVHVVRPVQFPETPQWSSHNTDILFSFVLKGTLDL 317          
BLAST of mRNA_H-canaliculatus_M_contigs77441.1.1 vs.
Match: Cupin (domain protein n=2 Tax=Boseongicola TaxID=1648497 RepID=A0A238J0Z5_9RHOB)

HSP 1 Score: 233 bits (593), Expect = 3.590e-73
Identity = 108/167 (64.67%), Postives = 127/167 (76.05%), Query Frame = 1
Query:    1 VPDRVHYHTIGFQLIFCYRGWVRLVYEDQGEPFILSAGDCVIQPPEIRHRVLESSDNLEVVEIGVPSDHETTIDHSMELPTSTYKPDRMFSGQRFCHSKVAEASWQPFRINGFNYRETGINEATGGLANVVVARFNGNTPSPCTHNSDILFTYVLEGSMTLTGEDNQ 501
            VPD VHYHT+GFQLIFCYRGWV LVYEDQGEPF L AG+CVIQPPEIRHRVL +SDN+EV+EIGVP++H TTIDH MELP +   P+R+F GQRF H K   A W+PFR+ GF  R+T I+  TGG+A V V R  G  P    H  DILFT+V+EG+MTL GE  +
Sbjct:  152 VPDMVHYHTVGFQLIFCYRGWVDLVYEDQGEPFRLFAGNCVIQPPEIRHRVLFASDNIEVIEIGVPAEHVTTIDHEMELPNAEVNPERLFQGQRFVHHKAEGAEWRPFRLKGFQSRDTTIDANTGGVAGVHVVRRGGGDPEWTRHEGDILFTFVMEGAMTLEGEGKE 318          
BLAST of mRNA_H-canaliculatus_M_contigs77441.1.1 vs.
Match: Cupin (n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A2A4PAK4_9HYPH)

HSP 1 Score: 233 bits (594), Expect = 3.680e-73
Identity = 114/174 (65.52%), Postives = 135/174 (77.59%), Query Frame = 1
Query:    1 VPDRVHYHTIGFQLIFCYRGWVRLVYEDQGEPFILSAGDCVIQPPEIRHRVLESSDNLEVVEIGVPSDHETTIDHSMELPTSTYKPDRMFSGQRFCHSKVAEASWQPFRINGFNYRETGINEATGGLANVVVARF----NGNTPSPCTHNSDILFTYVLEGSMTLTGEDNQAHE 510
            VPD VHYHT+GFQLIFCYRGWVRLVYEDQGEPFIL+AGDCVIQPP IRHRVLESS NLEV+EIGVP+DH TTIDH MELPT+   P+R F GQRF   ++ +A+W   R+ GF  R+TGI  AT G+ANV VAR     NG   S   H+SDILF++V+EG +TL  ED ++H+
Sbjct:  160 VPDMVHYHTVGFQLIFCYRGWVRLVYEDQGEPFILNAGDCVIQPPXIRHRVLESSGNLEVIEIGVPADHVTTIDHVMELPTNMLDPERDFDGQRFIRHELKDAAWIEHRLKGFECRDTGIGGATDGVANVQVARVKSAPNGEVTS---HSSDILFSFVMEGCVTLACEDGKSHQ 330          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs77441.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Cupin5.450e-8372.56(Fragment) n=1 Tax=Rhodobacteraceae bacterium TaxI... [more]
Cupin2.600e-7967.65n=1 Tax=Chromatiales bacterium (ex Bugula neritina... [more]
cupin5.590e-7869.01domain-containing protein n=1 Tax=Winogradskyella ... [more]
Cupin1.240e-7465.09n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepI... [more]
Mannose-6-phosphate1.610e-7464.91isomerase, cupin superfamily n=11 Tax=Pseudovibrio... [more]
Cupin3.530e-7467.47domain-containing protein n=1 Tax=Flavobacteriacea... [more]
Quercetin6.300e-7466.67dioxygenase-like cupin family protein n=5 Tax=Sulf... [more]
Cupin8.930e-7468.10domain-containing protein n=1 Tax=Haliscomenobacte... [more]
Cupin3.590e-7364.67domain protein n=2 Tax=Boseongicola TaxID=1648497 ... [more]
Cupin3.680e-7365.52n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs77441contigH-canaliculatus_M_contigs77441:2..511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1342299.Z947_1454
PFAMsCupin_2
Model size510
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.03e-74
EggNOG OGsCOG0662@1|root,COG1917@1|root,COG0662@2|Bacteria,COG1917@2|Bacteria,1NNBT@1224|Proteobacteria,2U1PR@28211|Alphaproteobacteria,3ZVCJ@60136|Sulfitobacter
DescriptionCupin 2, conserved barrel domain protein
Cds size510
COG categoryG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854111.929321-CDS-H-canaliculatus_M_contigs77441:1..5111696854111.929321-CDS-H-canaliculatus_M_contigs77441:1..511Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs77441 2..511 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs77441.1.1prot_H-canaliculatus_M_contigs77441.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs77441 2..511 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs77441.1.1

>prot_H-canaliculatus_M_contigs77441.1.1 ID=prot_H-canaliculatus_M_contigs77441.1.1|Name=mRNA_H-canaliculatus_M_contigs77441.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=170bp
VPDRVHYHTIGFQLIFCYRGWVRLVYEDQGEPFILSAGDCVIQPPEIRHR
VLESSDNLEVVEIGVPSDHETTIDHSMELPTSTYKPDRMFSGQRFCHSKV
AEASWQPFRINGFNYRETGINEATGGLANVVVARFNGNTPSPCTHNSDIL
FTYVLEGSMTLTGEDNQAHE
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mRNA from alignment at H-canaliculatus_M_contigs77441:2..511-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs77441.1.1 ID=mRNA_H-canaliculatus_M_contigs77441.1.1|Name=mRNA_H-canaliculatus_M_contigs77441.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=510bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77441:2..511- (Hapterophycus canaliculatus Oshoro7m male)
GTCCCTGATAGGGTTCACTACCACACCATCGGATTTCAATTGATCTTTTG CTATCGCGGCTGGGTACGTCTGGTTTACGAAGATCAGGGTGAGCCGTTTA TTCTAAGCGCCGGTGATTGCGTAATACAGCCACCTGAAATTCGCCATCGT GTATTGGAATCATCCGATAATCTAGAGGTTGTTGAAATTGGTGTCCCATC CGATCATGAAACGACTATCGACCATTCAATGGAATTACCAACATCAACGT ATAAGCCAGATCGTATGTTCAGCGGACAACGATTTTGTCATTCGAAAGTA GCAGAAGCCTCATGGCAACCATTTAGAATTAATGGATTTAACTATCGAGA AACAGGCATTAACGAGGCCACCGGTGGACTCGCTAATGTAGTCGTTGCCA GGTTTAACGGCAATACACCTTCACCTTGCACGCACAATAGTGATATTTTG TTCACTTACGTTCTCGAAGGTAGTATGACCTTAACAGGAGAGGATAATCA AGCACATGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs77441:2..511-

>mRNA_H-canaliculatus_M_contigs77441.1.1 ID=mRNA_H-canaliculatus_M_contigs77441.1.1|Name=mRNA_H-canaliculatus_M_contigs77441.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=510bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77441:2..511- (Hapterophycus canaliculatus Oshoro7m male)
GTCCCTGATAGGGTTCACTACCACACCATCGGATTTCAATTGATCTTTTG
CTATCGCGGCTGGGTACGTCTGGTTTACGAAGATCAGGGTGAGCCGTTTA
TTCTAAGCGCCGGTGATTGCGTAATACAGCCACCTGAAATTCGCCATCGT
GTATTGGAATCATCCGATAATCTAGAGGTTGTTGAAATTGGTGTCCCATC
CGATCATGAAACGACTATCGACCATTCAATGGAATTACCAACATCAACGT
ATAAGCCAGATCGTATGTTCAGCGGACAACGATTTTGTCATTCGAAAGTA
GCAGAAGCCTCATGGCAACCATTTAGAATTAATGGATTTAACTATCGAGA
AACAGGCATTAACGAGGCCACCGGTGGACTCGCTAATGTAGTCGTTGCCA
GGTTTAACGGCAATACACCTTCACCTTGCACGCACAATAGTGATATTTTG
TTCACTTACGTTCTCGAAGGTAGTATGACCTTAACAGGAGAGGATAATCA
AGCACATGAG
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