mRNA_H-canaliculatus_M_contigs7744.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7744.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPJ1_ECTSI) HSP 1 Score: 313 bits (803), Expect = 6.200e-104 Identity = 160/192 (83.33%), Postives = 175/192 (91.15%), Query Frame = 1
Query: 286 AMAAAGEAVGEGVTFVETEAATRRNADSGMVAFVTGSNRGIGMEVTRQLLAKTKGTVVAACRNPSSAKDLHALGQLAGNQNRLDVVQMDIEDQASLDTAAEHVKRTYGRVDLLFNVAGVLGDGKNTPGPERSLRAMDREWLRHTLEVNTIGPMMLVAALAPLLESPAKKGDDGARPPSVVVNFSARVGSIGD 861
A AAAGE G V FV+TEAA RRNAD G VAFVTG+NRGIG+EVTRQLL + KGTVVAACR+PSSA DL ALG++AGN+ RLD+V+MDIEDQ SL+TAAEHV+ TYGRVDLLFNVAGVLGDGKNTPGPERS+RAMDR+WLRHTLEVNTIGPMMLVAAL PLLESPAKKGDDGA+PPSVVVNFSARVGSIGD
Sbjct: 10 ATAAAGEPSGGVVKFVKTEAAARRNADPGSVAFVTGANRGIGLEVTRQLLERAKGTVVAACRDPSSAADLRALGRIAGNEKRLDMVKMDIEDQTSLETAAEHVRSTYGRVDLLFNVAGVLGDGKNTPGPERSVRAMDRDWLRHTLEVNTIGPMMLVAALTPLLESPAKKGDDGAKPPSVVVNFSARVGSIGD 201
BLAST of mRNA_H-canaliculatus_M_contigs7744.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8A3_9STRA) HSP 1 Score: 182 bits (463), Expect = 1.120e-52 Identity = 94/170 (55.29%), Postives = 127/170 (74.71%), Query Frame = 1
Query: 355 RNADSGMVAFVTGSNRGIGMEVTRQLLAKTKGTVVAACRNPSSAKDLHALGQLAGNQNRLDVVQMDIEDQASLDTAAEHVKRTY-GRVDLLFNVAGVLGDGKNTPGPERSLRAMDREWLRHTLEVNTIGPMMLVAALAPLLESPAKKGDDGARPPSVVVNFSARVGSIGD 861
RNAD+G V +T ++RG+G+E+ +QL ++T+G V+A+CR PS A +L AL Q + R+ V+++D+ DQAS+D AA HV + GR+D LFNVAG+LGDG+ TPGPERSL A+ R+WLRH++EVN IGP+ML A+AP L + G A+ PSVVVNFSARVGSI D
Sbjct: 32 RNADTGAVFLLTAASRGLGLELAKQLASRTQGHVIASCRQPSKALELQALAQ--SHPGRMTVLELDVTDQASVDAAAAHVAALHNGRLDALFNVAGLLGDGRATPGPERSLGAIQRDWLRHSMEVNVIGPVMLAQAMAPHLRT---TGQGRAKTPSVVVNFSARVGSISD 196
BLAST of mRNA_H-canaliculatus_M_contigs7744.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UED2_9STRA) HSP 1 Score: 165 bits (418), Expect = 1.700e-45 Identity = 80/177 (45.20%), Postives = 123/177 (69.49%), Query Frame = 1
Query: 346 ATRRNADSGMVAFVTGSNRGIGMEVTRQLLAKTKGTVVAACRNPSSAKDLHALGQLAG-----NQNRLDVVQMDIEDQASLDTAAEHVKRTYGRVDLLFNVAGVLGDGKNTPGPERSLRAMDREWLRHTLEVNTIGPMMLVAALAPLLESPAKKGDDGARPPSVVVNFSARVGSIGD 861
A +RN D V VTG++RGIG++ + L+ +T+G +VA CR+P +A LH + +++R++V+++DIEDQ S+D + ++ +Y RVD+L NVAG+LGDG +TPGPERSL +DR+W+ ++ VN IGP+ML AL+PL+ SP ++G + R +++ N SARVGSI D
Sbjct: 62 AMKRNQDPNAVHVVTGASRGIGLQFVKSLIDRTEGKIVACCRSPENAHGLHTFLETMSLTDSLDRDRIEVLKLDIEDQTSIDELSNSIRNSYNRVDVLLNVAGLLGDGTSTPGPERSLAKLDRDWIEKSMAVNVIGPVMLSQALSPLMASP-QRGKEDKRATTLIANLSARVGSISD 237
BLAST of mRNA_H-canaliculatus_M_contigs7744.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PXF5_9STRA) HSP 1 Score: 165 bits (418), Expect = 2.640e-45 Identity = 84/174 (48.28%), Postives = 123/174 (70.69%), Query Frame = 1
Query: 346 ATRRNADSGMVAFVTGSNRGIGMEVTRQLLAKTKGTVVAACRNPSSAKDLHA-LGQLAGNQNRLDVVQ-MDIEDQASLDTAAEHVKRTYGRVDLLFNVAGVLGDGKNTPGPERSLRAMDREWLRHTLEVNTIGPMMLVAALAPLLESPAKKGDDGARPPSVVVNFSARVGSIGD 861
A +RN D+ V VTG++RGIG+++ + L +TKGT+VA CR P A LH+ + L N++R +++ +D+E+Q +++T + ++ ++ RVD+L+NVAG+LGDGKNTPGPERSLR++DR W ++ VN IGP+ L LAP++ S KK D G SV+VN SARVGSI D
Sbjct: 85 ADKRNNDADAVFVVTGASRGIGLQILKDLATRTKGTIVACCRAPKEADHLHSFIKSLPTNESRRILLKSLDLEEQETIETLGKEIEDSHKRVDVLYNVAGILGDGKNTPGPERSLRSLDRNWAMKSMNVNYIGPVSLSQVLAPMMRSTLKKDDRGK---SVIVNLSARVGSISD 255
BLAST of mRNA_H-canaliculatus_M_contigs7744.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HD28_9STRA) HSP 1 Score: 164 bits (416), Expect = 7.790e-45 Identity = 86/180 (47.78%), Postives = 117/180 (65.00%), Query Frame = 1
Query: 349 TRRNADSGMVAFVTGSNRGIGMEVTRQLLAKTKGTVVAACRNPSSAKDLHA-LGQLAGNQNRLDVVQMDIEDQASLDTAAEHVKRTYGRVDLLFNVAGVLGDGKNTPGPERSLRAMDREWLRHTLEVNTIGPMMLVAALAPLLESPAKKGDDGA--------RPPSVVVNFSARVGSIGD 861
++RN D V V GS+RGIG++ + L+ +++GT++A CR+P SA L+ L R+ +Q+D+EDQAS+D AAE +K +Y RVD LFNVAG+LGDGK+ PGPERSL +DR+W+ T+ VN IGP+ML ALAP++ S R SV+VN SARVGSI D
Sbjct: 93 SKRNGDPNAVFVVNGSSRGIGLQFVKSLVDRSQGTILACCRSPDSADKLNEFLSSSPQASQRVKTIQLDVEDQASIDAAAEEIKTSYNRVDCLFNVAGILGDGKSDPGPERSLSKLDRDWVEKTMAVNVIGPVMLSQALAPMMISKXXXXXXXXXXXXXXXXRAQSVIVNLSARVGSISD 272
BLAST of mRNA_H-canaliculatus_M_contigs7744.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YRX8_9STRA) HSP 1 Score: 165 bits (417), Expect = 8.360e-45 Identity = 88/185 (47.57%), Postives = 125/185 (67.57%), Query Frame = 1
Query: 331 VETEAATRRNADSGMVAFVTGSNRGIGMEVTRQLLAKTKGTVVAACRNPSSAKDLHALGQLAGNQNRLDVVQMDIEDQASLDTAAEHVKRTYGRVDLLFNVAGVLGDG-KNTPGPERSLRAMDREWLRHTLEVNTIGPMMLVAALAPLL-----ESPAKKGD--DGARPPSVVVNFSARVGSIGD 861
+E+ + +RN D V VTG++RGIG++ + LL +TKGT+VA CR+PS+A +L L + + R+D+V +D+E+Q++++ A ++ Y RVD LFNVAG+LGDG K TPGPERS+ MDR WL T+ VN IGP+ML L+ ++ +K+GD D RP +VVVN SARVGSI D
Sbjct: 106 LESLESVKRNQDPRAVFVVTGASRGIGLQFVKSLLERTKGTIVACCRSPSAATELIELRESMSSSKRIDIVALDLEEQSTIEKAGSFLREKYDRVDGLFNVAGLLGDGGKTTPGPERSISKMDRGWLEKTMAVNVIGPVMLTKELSSMIMTRRKRQRSKEGDIADTERPIAVVVNLSARVGSIAD 290
BLAST of mRNA_H-canaliculatus_M_contigs7744.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L7K7_9STRA) HSP 1 Score: 162 bits (409), Expect = 5.390e-44 Identity = 83/175 (47.43%), Postives = 112/175 (64.00%), Query Frame = 1
Query: 352 RRNADSGMVAFVTGSNRGIGMEVTRQLLAKTKGTVVAACRNPSSAKDLHALGQLAGNQNRLDVVQMDIEDQASLDTAAEHVKRTYGRVDLLFNVAGVLGDGKNTPGPERSLRAMDREWLRHTLEVNTIGPMMLVAALAPLL---ESPAKKGDDGA--RPPSVVVNFSARVGSIGD 861
+RN D V VTG++RGIG++ + L KT+G +VA CR P A L+ N +R++V+ +D+E+Q+S++ V+ TY RVD+L NVAG+LGD K TPGPERSL +DR+W +L +N IGP+M+ L PLL P K DDG RP +VV N SARVGSI D
Sbjct: 79 KRNQDPEAVFVVTGASRGIGLQFVKALTTKTQGKIVACCRKPEQATQLNEFIGTLPNPSRVEVIPLDLEEQSSIEAFGTRVRNTYNRVDILLNVAGLLGDSKTTPGPERSLARVDRKWFETSLAINLIGPVMVTQELVPLLGQRRRPRKDNDDGTKDRPAAVVANLSARVGSISD 253
BLAST of mRNA_H-canaliculatus_M_contigs7744.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YYN6_9STRA) HSP 1 Score: 160 bits (404), Expect = 5.020e-43 Identity = 84/182 (46.15%), Postives = 116/182 (63.74%), Query Frame = 1
Query: 355 RNADSGMVAFVTGSNRGIGMEVTRQLLAKTKGTVVAACRNPSSAKDLHALGQLAG--NQNRLDVVQMDIEDQASLDTAAEHVKRTYGRVDLLFNVAGVLGDGKNTPGPERSLRAMDREWLRHTLEVNTIGPMMLVAALAPLLESPAKKG-----------DDGARPPSVVVNFSARVGSIGD 861
RN+D V V G++RGIG++ +LL+ TKG V+A CR+P A L L ++NR++V+++D+E+Q S++ +A +K YGRVDLL NVAG+LGDGKNTPGPERS+ ++REW+ T +VN IGP+ML LAPL+ + G + R VV N SARVGSI D
Sbjct: 95 RNSDPDAVFLVNGASRGIGLQFVSKLLSDTKGRVIAGCRSPDDAPKLQDLLSTLDKKSRNRVEVIKLDVENQDSIELSAAEIKVQYGRVDLLLNVAGILGDGKNTPGPERSVAKIEREWMEKTFQVNVIGPVMLAKELAPLMTQARRTGRRKADSSDETLSEKQRAVGVVANLSARVGSISD 276
BLAST of mRNA_H-canaliculatus_M_contigs7744.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MLR2_9STRA) HSP 1 Score: 159 bits (402), Expect = 1.080e-42 Identity = 87/189 (46.03%), Postives = 123/189 (65.08%), Query Frame = 1
Query: 346 ATRRNADSGMVAFVTGSNRGIGMEVTRQLLAKTKGTVVAACRNPSSAKDLHALGQL--AGNQNRLDVVQMDIEDQASLDTAAEHVKRTYGRVDLLFNVAGVLGDG-KNTPGPERSLRAMDREWLRHTLEVNTIGPMMLVAALAPLLESPAKKG---------DDGA-----RPPSVVVNFSARVGSIGD 861
A +RNAD V +TG+NRGIG++ + +L +++G + A CR+P A+ L A+ A + R+ +V++D+EDQ S++ AA+ ++ YGRVD L NVAG+LGDG ++TPGPERSL +DREW +L VN IGP+ML ALAPL+ + +G D+G R PS+V N SARVGSI D
Sbjct: 92 ANQRNADPHAVFVITGANRGIGLQFVKAVLDRSRGRIAACCRSPRDAEALEAVKASLPAEERERIRLVRLDVEDQMSIEGAADEIRTEYGRVDALLNVAGILGDGGESTPGPERSLGKIDREWTAKSLAVNVIGPVMLAQALAPLMRTKGGRGQRRTRRKTSDEGEEKEEQRAPSIVANLSARVGSISD 280
BLAST of mRNA_H-canaliculatus_M_contigs7744.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3XUM5_9STRA) HSP 1 Score: 159 bits (401), Expect = 2.190e-42 Identity = 82/183 (44.81%), Postives = 126/183 (68.85%), Query Frame = 1
Query: 355 RNADSGMVAFVTGSNRGIGMEVTRQLLAKTKGTVVAACRNPSSAKDLHALGQLAGNQNRLDVVQMDIEDQASLDTAAEHVKRTYGRVDLLFNVAGVLGDGK-NTPGPERSLRAMDREWLRHTLEVNTIGPMMLVAALAPLLESPAKKG---DDGA----------RPPSVVVNFSARVGSIGD 861
RN+DS V V+G++RGIG++ LL +T+G ++A CR+P++A L+ + + + +R++V+ +D+EDQ+++D + +TY R+D LFNVAG+LGDG +TPGPERSL +++R+WL +L VN +GP MLV AL+PL+ + K+ D+G RPP+V+VN SARVGSI D
Sbjct: 117 RNSDSNAVFVVSGASRGIGLQFVSSLLERTQGKIIACCRSPATADQLNNIA--SQHTDRIEVLPLDLEDQSTIDALGLQLTKTYQRIDALFNVAGILGDGGISTPGPERSLASIERDWLEKSLAVNIVGPTMLVKALSPLMRTKGKRKILIDNGGKQLVVIPPTDRPPTVIVNLSARVGSISD 297 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7744.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs7744.1.1 >prot_H-canaliculatus_M_contigs7744.1.1 ID=prot_H-canaliculatus_M_contigs7744.1.1|Name=mRNA_H-canaliculatus_M_contigs7744.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=287bp MVFSTLLGIASRVSGGSWGIAAPQGMPTSAMARVMPRTLATVISRPGILRback to top mRNA from alignment at H-canaliculatus_M_contigs7744:1..1798- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs7744.1.1 ID=mRNA_H-canaliculatus_M_contigs7744.1.1|Name=mRNA_H-canaliculatus_M_contigs7744.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1798bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7744:1..1798- (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7744:1..1798- >mRNA_H-canaliculatus_M_contigs7744.1.1 ID=mRNA_H-canaliculatus_M_contigs7744.1.1|Name=mRNA_H-canaliculatus_M_contigs7744.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=861bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7744:1..1798- (Hapterophycus canaliculatus Oshoro7m male)back to top |