mRNA_H-canaliculatus_M_contigs77422.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs77422.1.1
Unique NamemRNA_H-canaliculatus_M_contigs77422.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs77422.1.1 vs.
Match: ABC (transporter ATP-binding protein YojI n=1 Tax=Rubripirellula lacrimiformis TaxID=1930273 RepID=A0A517NJK1_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 6.180e-8
Identity = 38/65 (58.46%), Postives = 43/65 (66.15%), Query Frame = 1 
Query:    1 MKLFLILARSSWAAGLASAALGALSGVASLTLITLIHRALTQSAEASGQQESLSIAFSAACAFVL 195
            MKLFLIL RSSW +GL S  LGALSG+A+L LI LIHRALT     S   + L   F+ AC  VL
Sbjct:    1 MKLFLILIRSSWVSGLVSGLLGALSGMANLGLIMLIHRALTDDPSDS---QWLPYLFAGACVLVL 62
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BLAST of mRNA_H-canaliculatus_M_contigs77422.1.1 vs.
Match: ABC (transporter ATP-binding protein YojI n=1 Tax=Novipirellula artificiosorum TaxID=2528016 RepID=A0A5C6D551_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 5.520e-7
Identity = 38/70 (54.29%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:    1 MKLFLILARSSWAAGLASAALGALSGVASLTLITLIHRALTQSAEASGQQESLSIAFSAACAFVLAAETI 210
            M LF ++ RSSW A LAS  LG  SG+A+L LITLIHRA   S EAS Q   L   F+AACA VL  + +
Sbjct:    1 MNLFFLMLRSSWKASLASVVLGGGSGLATLALITLIHRAF--SGEAS-QSSLLPFLFAAACAVVLVLQVL 67
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs77422.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
ABC6.180e-858.46transporter ATP-binding protein YojI n=1 Tax=Rubri... [more]
ABC5.520e-754.29transporter ATP-binding protein YojI n=1 Tax=Novip... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs77422contigH-canaliculatus_M_contigs77422:16..225 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog243090.RB9612
PFAMsABC_membrane,ABC_tran
Model size210
Max annot lvl203682|Planctomycetes
KEGG koko:K06159,ko:K06160
KEGG TC3.A.1.113.2,3.A.1.113.3
KEGG Pathwayko02010,map02010
Hectar predicted targeting categorysignal peptide
Exons1
Evalue6.62e-08
EggNOG OGsCOG4615@1|root,COG4615@2|Bacteria,2J2MM@203682|Planctomycetes
DescriptionABC transporter transmembrane region
Cds size210
COG categoryPQ
BRITEko00000,ko00001,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854111.7247527-CDS-H-canaliculatus_M_contigs77422:15..2251696854111.7247527-CDS-H-canaliculatus_M_contigs77422:15..225Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs77422 16..225 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs77422.1.1prot_H-canaliculatus_M_contigs77422.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs77422 16..225 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs77422.1.1

>prot_H-canaliculatus_M_contigs77422.1.1 ID=prot_H-canaliculatus_M_contigs77422.1.1|Name=mRNA_H-canaliculatus_M_contigs77422.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=70bp
MKLFLILARSSWAAGLASAALGALSGVASLTLITLIHRALTQSAEASGQQ
ESLSIAFSAACAFVLAAETI
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mRNA from alignment at H-canaliculatus_M_contigs77422:16..225-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs77422.1.1 ID=mRNA_H-canaliculatus_M_contigs77422.1.1|Name=mRNA_H-canaliculatus_M_contigs77422.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=210bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77422:16..225- (Hapterophycus canaliculatus Oshoro7m male)
ATGAAACTATTCCTGATTCTCGCGCGATCGTCCTGGGCTGCTGGTTTGGC
TTCGGCAGCGTTAGGTGCCCTGAGCGGTGTAGCCAGTTTGACGCTGATTA
CGTTGATTCATCGTGCGCTCACTCAATCCGCCGAAGCATCCGGGCAGCAA
GAATCGCTTTCCATTGCTTTTTCGGCAGCATGTGCGTTCGTTTTGGCAGC
GGAGACGATA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs77422:16..225-

>mRNA_H-canaliculatus_M_contigs77422.1.1 ID=mRNA_H-canaliculatus_M_contigs77422.1.1|Name=mRNA_H-canaliculatus_M_contigs77422.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=210bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77422:16..225- (Hapterophycus canaliculatus Oshoro7m male)
ATGAAACTATTCCTGATTCTCGCGCGATCGTCCTGGGCTGCTGGTTTGGC
TTCGGCAGCGTTAGGTGCCCTGAGCGGTGTAGCCAGTTTGACGCTGATTA
CGTTGATTCATCGTGCGCTCACTCAATCCGCCGAAGCATCCGGGCAGCAA
GAATCGCTTTCCATTGCTTTTTCGGCAGCATGTGCGTTCGTTTTGGCAGC
GGAGACGATA
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