mRNA_H-canaliculatus_M_contigs77400.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs77400.1.1
Unique NamemRNA_H-canaliculatus_M_contigs77400.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs77400.1.1 vs.
Match: MGS-like (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L1Y5_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 8.300e-20
Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    1 QVGTVEMTPVAIAYIRARNADPMSSFGDFAAVSDVVDEATAKVLKREVRGG 153
            +VG+VEMTP AIAYIRARNADPMSSFGDFAAVSDVVDEATAKVLKREV  G
Sbjct:  310 EVGSVEMTPTAIAYIRARNADPMSSFGDFAAVSDVVDEATAKVLKREVADG 360
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs77400.1.1 vs.
Match: MGS-like (domain-containing protein n=10 Tax=Aphanomyces TaxID=100860 RepID=A0A418AZ52_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.670e-17
Identity = 39/51 (76.47%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    1 QVGTVEMTPVAIAYIRARNADPMSSFGDFAAVSDVVDEATAKVLKREVRGG 153
            +VG +E+TP+++AY+RARNADP+SSFGDF AVSDVVDEATAKVLKREV  G
Sbjct:  325 EVGNIELTPLSVAYLRARNADPLSSFGDFVAVSDVVDEATAKVLKREVSDG 375
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs77400.1.1 vs.
Match: Phosphoribosylaminoimidazolecarboxamide (formyltransferase/IMP cyclohydrolase n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CYD7_SAPPC)

HSP 1 Score: 83.2 bits (204), Expect = 2.280e-17
Identity = 38/51 (74.51%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    1 QVGTVEMTPVAIAYIRARNADPMSSFGDFAAVSDVVDEATAKVLKREVRGG 153
            +VG +E+TP+++AY+RARNADP+SSFGDF AVSD+VDEATAKVLKREV  G
Sbjct:  310 EVGNIELTPLSVAYLRARNADPLSSFGDFVAVSDIVDEATAKVLKREVSDG 360
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs77400.1.1 vs.
Match: Bifunctional (purine biosynthesis protein PURH n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A311_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 4.260e-17
Identity = 38/51 (74.51%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    1 QVGTVEMTPVAIAYIRARNADPMSSFGDFAAVSDVVDEATAKVLKREVRGG 153
            +VG +++TP++IAY+RARNADP+SSFGDF AVSD+VDEATAKVLKREV  G
Sbjct:  735 EVGNIQLTPLSIAYLRARNADPLSSFGDFVAVSDIVDEATAKVLKREVSDG 785
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs77400.1.1 vs.
Match: MGS-like (domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XYH0_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 5.810e-17
Identity = 39/51 (76.47%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:    1 QVGTVEMTPVAIAYIRARNADPMSSFGDFAAVSDVVDEATAKVLKREVRGG 153
            +VG V +TP+A+AY+RARNADP+SSFGDF AVSDVVDEATAK+LKREV  G
Sbjct:  313 EVGNVALTPLALAYLRARNADPLSSFGDFVAVSDVVDEATAKILKREVSDG 363
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs77400.1.1 vs.
Match: Phosphoribosylaminoimidazolecarboxamide (formyltransferase/IMP cyclohydrolase n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4C2H2_PYTIN)

HSP 1 Score: 81.3 bits (199), Expect = 1.080e-16
Identity = 38/51 (74.51%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:    1 QVGTVEMTPVAIAYIRARNADPMSSFGDFAAVSDVVDEATAKVLKREVRGG 153
            +VG V++TP+A+AY+RARNADP+ SFGDF AVSDVVDEATAK+LKREV  G
Sbjct:  312 EVGNVQLTPLALAYLRARNADPLCSFGDFVAVSDVVDEATAKILKREVSDG 362
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs77400.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YG81_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.350e-16
Identity = 38/51 (74.51%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:    1 QVGTVEMTPVAIAYIRARNADPMSSFGDFAAVSDVVDEATAKVLKREVRGG 153
            +VG V +TP+++AY+RARNADP+SSFGDF AVSDVVDEATAK+LKREV  G
Sbjct:  144 EVGNVTLTPLSLAYLRARNADPLSSFGDFVAVSDVVDEATAKILKREVSDG 194
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs77400.1.1 vs.
Match: MGS-like (domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XDM7_GLOUD)

HSP 1 Score: 80.9 bits (198), Expect = 1.480e-16
Identity = 38/51 (74.51%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:    1 QVGTVEMTPVAIAYIRARNADPMSSFGDFAAVSDVVDEATAKVLKREVRGG 153
            +VG V +TP+++AY+RARNADP+SSFGDF AVSDVVDEATAK+LKREV  G
Sbjct:  312 EVGNVTLTPLSLAYLRARNADPLSSFGDFVAVSDVVDEATAKILKREVSDG 362
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs77400.1.1 vs.
Match: MGS-like (domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B3W9_HYAAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.480e-16
Identity = 38/51 (74.51%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:    1 QVGTVEMTPVAIAYIRARNADPMSSFGDFAAVSDVVDEATAKVLKREVRGG 153
            +VG V +TP+++AY+RARNADP+SSFGDF AVSDVVDEATAK+LKREV  G
Sbjct:  312 EVGNVTLTPLSLAYLRARNADPLSSFGDFVAVSDVVDEATAKILKREVSDG 362
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs77400.1.1 vs.
Match: MGS-like (domain-containing protein n=21 Tax=Peronosporaceae TaxID=4777 RepID=H3G863_PHYRM)

HSP 1 Score: 80.9 bits (198), Expect = 1.480e-16
Identity = 38/51 (74.51%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:    1 QVGTVEMTPVAIAYIRARNADPMSSFGDFAAVSDVVDEATAKVLKREVRGG 153
            +VG V +TP+++AY+RARNADP+SSFGDF AVSDVVDEATAK+LKREV  G
Sbjct:  313 EVGNVTLTPLSLAYLRARNADPLSSFGDFVAVSDVVDEATAKILKREVSDG 363
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs77400.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
MGS-like8.300e-2090.20domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
MGS-like1.670e-1776.47domain-containing protein n=10 Tax=Aphanomyces Tax... [more]
Phosphoribosylaminoimidazolecarboxamide2.280e-1774.51formyltransferase/IMP cyclohydrolase n=3 Tax=Sapro... [more]
Bifunctional4.260e-1774.51purine biosynthesis protein PURH n=1 Tax=Thraustot... [more]
MGS-like5.810e-1776.47domain-containing protein n=1 Tax=Pythium brassicu... [more]
Phosphoribosylaminoimidazolecarboxamide1.080e-1674.51formyltransferase/IMP cyclohydrolase n=2 Tax=Pythi... [more]
Uncharacterized1.350e-1674.51protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID... [more]
MGS-like1.480e-1674.51domain-containing protein n=1 Tax=Globisporangium ... [more]
MGS-like1.480e-1674.51domain-containing protein n=1 Tax=Hyaloperonospora... [more]
MGS-like1.480e-1674.51domain-containing protein n=21 Tax=Peronosporaceae... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs77400contigH-canaliculatus_M_contigs77400:335..487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LKS8
Preferred nameATIC
PFAMsAICARFT_IMPCHas,MGS
Model size153
Max annot lvl2759|Eukaryota
KEGG rclassRC00026,RC00263,RC00456
KEGG koko:K00602,ko:K06943
KEGG ReactionR01127,R04560
KEGG Pathwayko00230,ko00670,ko01100,ko01110,ko01130,ko01523,ko03008,map00230,map00670,map01100,map01110,map01130,map01523,map03008
KEGG ModuleM00048
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0003006,GO:0003360,GO:0003674,GO:0003824,GO:0003937,GO:0004643,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006091,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006575,GO:0006725,GO:0006732,GO:0006753,GO:0006760,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007049,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0008152,GO:0009058,GO:0009060,GO:0009108,GO:0009116,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009235,GO:0009259,GO:0009260,GO:0009396,GO:0009611,GO:0009653,GO:0009987,GO:0010035,GO:0015980,GO:0016020,GO:0016053,GO:0016740,GO:0016741,GO:0016742,GO:0016787,GO:0016810,GO:0016814,GO:0017144,GO:0018130,GO:0019238,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0019953,GO:0021537,GO:0021543,GO:0021549,GO:0021987,GO:0022037,GO:0022402,GO:0022413,GO:0022414,GO:0030154,GO:0030435,GO:0030437,GO:0030900,GO:0030902,GO:0031099,GO:0031100,GO:0032501,GO:0032502,GO:0032505,GO:0033013,GO:0034293,GO:0034641,GO:0034654,GO:0042060,GO:0042221,GO:0042398,GO:0042558,GO:0042559,GO:0042802,GO:0042803,GO:0043436,GO:0043603,GO:0043604,GO:0043648,GO:0043934,GO:0043935,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0045333,GO:0046040,GO:0046390,GO:0046394,GO:0046452,GO:0046483,GO:0046653,GO:0046654,GO:0046983,GO:0048468,GO:0048513,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050896,GO:0051186,GO:0051188,GO:0051321,GO:0051704,GO:0055086,GO:0055114,GO:0060322,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1903046
Exons1
Evalue9.98e-18
EggNOG OGsCOG0138@1|root,KOG2555@2759|Eukaryota
EC2.1.2.3,3.5.4.10
DescriptionIMP cyclohydrolase activity
Cds size135
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854111.568086-UTR-H-canaliculatus_M_contigs77400:334..3521696854111.568086-UTR-H-canaliculatus_M_contigs77400:334..352Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs77400 335..352 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854111.5861368-CDS-H-canaliculatus_M_contigs77400:352..4871696854111.5861368-CDS-H-canaliculatus_M_contigs77400:352..487Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs77400 353..487 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs77400.1.1prot_H-canaliculatus_M_contigs77400.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs77400 353..487 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs77400.1.1

>prot_H-canaliculatus_M_contigs77400.1.1 ID=prot_H-canaliculatus_M_contigs77400.1.1|Name=mRNA_H-canaliculatus_M_contigs77400.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=45bp
MTPVAIAYIRARNADPMSSFGDFAAVSDVVDEATAKVLKREVRGG
back to top

mRNA from alignment at H-canaliculatus_M_contigs77400:335..487+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs77400.1.1 ID=mRNA_H-canaliculatus_M_contigs77400.1.1|Name=mRNA_H-canaliculatus_M_contigs77400.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=153bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77400:335..487+ (Hapterophycus canaliculatus Oshoro7m male)
CAGGTGGGCACGGTAGAGATGACCCCGGTGGCGATCGCCTACATCAGGGC
GCGGAACGCGGATCCCATGTCGTCTTTCGGAGACTTCGCTGCCGTCTCGG
ACGTCGTGGACGAGGCCACGGCCAAGGTCCTCAAGCGTGAGGTGAGAGGG
GGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs77400:335..487+

>mRNA_H-canaliculatus_M_contigs77400.1.1 ID=mRNA_H-canaliculatus_M_contigs77400.1.1|Name=mRNA_H-canaliculatus_M_contigs77400.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=135bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77400:335..487+ (Hapterophycus canaliculatus Oshoro7m male)
ATGACCCCGGTGGCGATCGCCTACATCAGGGCGCGGAACGCGGATCCCAT
GTCGTCTTTCGGAGACTTCGCTGCCGTCTCGGACGTCGTGGACGAGGCCA
CGGCCAAGGTCCTCAAGCGTGAGGTGAGAGGGGGA
back to top