mRNA_H-canaliculatus_M_contigs77356.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs77356.1.1
Unique NamemRNA_H-canaliculatus_M_contigs77356.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs77356.1.1 vs.
Match: ABC (transporter substrate-binding protein n=1 Tax=Sulfitobacter sp. TaxID=1903071 RepID=A0A3D2FBX6_9RHOB)

HSP 1 Score: 261 bits (666), Expect = 1.860e-84
Identity = 117/170 (68.82%), Postives = 135/170 (79.41%), Query Frame = 1
Query:    1 EVPVGTVLDIPCPEGSVQKAPDPTPLQQADAELTLVTASNYAPFTDWNWPGHGMVTELVNAALEESPSPIPYAIVWEDNWSKHLSPMLDEKQVDMGFPWFRPDCENNPQHSRCVNFHFSDPLVDLVILLFARTDGSMRFEADSDVIGKTLCRPAGYFTHDLDTPDRNWLS 510
            +V VG  L IPCP GSV    DPTPLQQ DAELTLVT SNYAPFTD  WPG+GMVTELVNAA EE+P P+ +AIVWED+WS+HL+PML+EK VDMGFPW+RP+CE NP   RC NFHFSDPL+DLV+L F  TD  MRFE D+DV GK +CRP G+ T+DLD   RNWL+
Sbjct:   66 DVAVGKELVIPCPAGSVVVEADPTPLQQVDAELTLVTGSNYAPFTDRGWPGNGMVTELVNAAFEETPEPVTFAIVWEDDWSQHLNPMLEEKVVDMGFPWYRPNCEANPSQYRCANFHFSDPLLDLVMLFFVNTDNPMRFETDNDVFGKNICRPKGFLTYDLDQDGRNWLA 235          
BLAST of mRNA_H-canaliculatus_M_contigs77356.1.1 vs.
Match: transporter (substrate-binding domain-containing protein n=1 Tax=Tateyamaria omphalii TaxID=299262 RepID=UPI0016766E4E)

HSP 1 Score: 258 bits (659), Expect = 2.650e-83
Identity = 121/178 (67.98%), Postives = 140/178 (78.65%), Query Frame = 1
Query:    1 EVPVGTVLDIPCPEGSVQ-KAP------DPTPLQQAD-AELTLVTASNYAPFTDWNWPGHGMVTELVNAALEESPSPIPYAIVWEDNWSKHLSPMLDEKQVDMGFPWFRPDCENNPQHSRCVNFHFSDPLVDLVILLFARTDGSMRFEADSDVIGKTLCRPAGYFTHDLDTPDRNWLS 510
            ++P GTVL IPCPEG+ Q +AP      DP PLQQ D AE+ LVTASNYAPFTD +WPG GM+TELVNAA EE+P+P+ Y+I WE++WSKHL PMLD K+ DMGFPWF+PDC  NP + RC NFHFS+PLVDLVILLFAR D    F  D+D+ GKTLCRPAGYFTHDLD  DR WLS
Sbjct:   65 DLPAGTVLTIPCPEGAAQPQAPAPTVQADPKPLQQKDEAEIKLVTASNYAPFTDLDWPGQGMLTELVNAAFEETPNPLTYSIEWENDWSKHLFPMLDSKEFDMGFPWFKPDCAGNPSNERCANFHFSEPLVDLVILLFARADDRFTFAQDADLHGKTLCRPAGYFTHDLDRADRRWLS 242          
BLAST of mRNA_H-canaliculatus_M_contigs77356.1.1 vs.
Match: transporter (substrate-binding domain-containing protein n=1 Tax=Shimia sp. WX04 TaxID=2582893 RepID=UPI0011BDAA0C)

HSP 1 Score: 249 bits (636), Expect = 7.310e-80
Identity = 108/170 (63.53%), Postives = 131/170 (77.06%), Query Frame = 1
Query:    1 EVPVGTVLDIPCPEGSVQKAPDPTPLQQADAELTLVTASNYAPFTDWNWPGHGMVTELVNAALEESPSPIPYAIVWEDNWSKHLSPMLDEKQVDMGFPWFRPDCENNPQHSRCVNFHFSDPLVDLVILLFARTDGSMRFEADSDVIGKTLCRPAGYFTHDLDTPDRNWLS 510
            ++P GTVL +PCP        + TPLQ  DAE+ L+T SNYAPFTD  WPG GM+TELVNAA+EE+PSP+ Y+I WED+WSKHL PMLD K+ DMGFPWFRPDCEN P + RCVNFHFSDP+V+L+ LLF      + F+ DSD+ GKTLCRPAGYFT DLD+ +R WL+
Sbjct:   71 QIPAGTVLTVPCPLDGSDFVAEATPLQVEDAEMMLITGSNYAPFTDRAWPGQGMITELVNAAMEETPSPVTYSITWEDDWSKHLFPMLDSKEFDMGFPWFRPDCENTPGNERCVNFHFSDPIVELLQLLFVANGSDLTFDQDSDLFGKTLCRPAGYFTFDLDSAERQWLT 240          
BLAST of mRNA_H-canaliculatus_M_contigs77356.1.1 vs.
Match: Transporter (substrate-binding domain-containing protein n=1 Tax=Pseudohalocynthiibacter aestuariivivens TaxID=1591409 RepID=A0A6G6FKA4_9RHOB)

HSP 1 Score: 248 bits (632), Expect = 2.530e-79
Identity = 111/171 (64.91%), Postives = 136/171 (79.53%), Query Frame = 1
Query:    1 EVPVGTVLDIPCPEGSVQKAPDPTPLQQ-ADAELTLVTASNYAPFTDWNWPGHGMVTELVNAALEESPSPIPYAIVWEDNWSKHLSPMLDEKQVDMGFPWFRPDCENNPQHSRCVNFHFSDPLVDLVILLFARTDGSMRFEADSDVIGKTLCRPAGYFTHDLDTPDRNWLS 510
            +VP G  + IPCP GSVQ  PDPTPL+Q ++AE+TL+T  NY+PFTD NWPG+GMVTELVNAALE +P+P+PYAI WED+WSKHL P+LD+K  DMGFPW RPDC+  P++ RC NFHFS PL+DL I+LF     +  +  D+DVIG++LCRPAGYFTHDLD  DR WLS
Sbjct:   67 DVPPGADIFIPCPAGSVQ--PDPTPLRQDSNAEMTLLTGGNYSPFTDRNWPGNGMVTELVNAALEMTPAPVPYAITWEDDWSKHLFPLLDDKVHDMGFPWLRPDCDATPENERCANFHFSAPLMDLPIMLFVAAGSNFNYSGDADVIGRSLCRPAGYFTHDLDRADRRWLS 235          
BLAST of mRNA_H-canaliculatus_M_contigs77356.1.1 vs.
Match: ABC (transporter substrate-binding protein n=1 Tax=Roseovarius sp. TE539 TaxID=2249812 RepID=A0A365U248_9RHOB)

HSP 1 Score: 242 bits (617), Expect = 5.630e-77
Identity = 108/170 (63.53%), Postives = 130/170 (76.47%), Query Frame = 1
Query:    1 EVPVGTVLDIPCPEGSVQKAPDPTPLQQADAELTLVTASNYAPFTDWNWPGHGMVTELVNAALEESPSPIPYAIVWEDNWSKHLSPMLDEKQVDMGFPWFRPDCENNPQHSRCVNFHFSDPLVDLVILLFARTDGSMRFEADSDVIGKTLCRPAGYFTHDLDTPDRNWLS 510
            E+  G  + +PCP G V  APD TPL+QADA++TL+T SNY+PFTD  WPG GMV ELVNAALE SPSP+PY+I WED+WS+HL PMLD K+ DMGFPW RPDCE  P   RC  FHFSDPL++L ++LF R      +E+D+D+ G+TLCRPAGYFTHDLD  DR WLS
Sbjct:   74 ELEPGREVYVPCPAGDV--APDATPLRQADAQMTLLTGSNYSPFTDRAWPGRGMVIELVNAALELSPSPVPYSIGWEDDWSRHLFPMLDGKEYDMGFPWLRPDCEATPDDERCAGFHFSDPLMELPVMLFTRAASDFTYESDADIPGRTLCRPAGYFTHDLDRDDRRWLS 241          
BLAST of mRNA_H-canaliculatus_M_contigs77356.1.1 vs.
Match: ABC (transporter substrate-binding protein n=1 Tax=Pelagicola sp. LXJ1103 TaxID=2175247 RepID=A0A2U2CZL7_9RHOB)

HSP 1 Score: 239 bits (611), Expect = 3.380e-76
Identity = 106/170 (62.35%), Postives = 129/170 (75.88%), Query Frame = 1
Query:    1 EVPVGTVLDIPCPEGSVQKAPDPTPLQQADAELTLVTASNYAPFTDWNWPGHGMVTELVNAALEESPSPIPYAIVWEDNWSKHLSPMLDEKQVDMGFPWFRPDCENNPQHSRCVNFHFSDPLVDLVILLFARTDGSMRFEADSDVIGKTLCRPAGYFTHDLDTPDRNWLS 510
            +V  G  + +PCP G +  APD TPL Q DAE+TL+T  NYAPFTD  WPG+G+VTELVNAALE +P P+PYAI WED WS+ L P+LDEK  DMGFPW RPDCE  P  + C +FHFS+PL+DL I+LF R +G M + +D+DV+GKTLCRP G+FTHDLD  DR WLS
Sbjct:   64 DVAPGAQVYVPCPAGEI--APDDTPLLQPDAEMTLLTGGNYAPFTDQTWPGNGLVTELVNAALEMTPEPVPYAITWEDQWSQDLLPLLDEKTHDMGFPWQRPDCEGTPDDALCASFHFSEPLIDLPIMLFVRAEGGMVYASDADVVGKTLCRPKGFFTHDLDRADRRWLS 231          
BLAST of mRNA_H-canaliculatus_M_contigs77356.1.1 vs.
Match: transporter (substrate-binding domain-containing protein n=1 Tax=Roseobacteraceae TaxID=2854170 RepID=UPI001C443050)

HSP 1 Score: 239 bits (611), Expect = 4.970e-76
Identity = 107/150 (71.33%), Postives = 123/150 (82.00%), Query Frame = 1
Query:   64 DPTPLQQ-ADAELTLVTASNYAPFTDWNWPGHGMVTELVNAALEESPSPIPYAIVWEDNWSKHLSPMLDEKQVDMGFPWFRPDCENNPQHSRCVNFHFSDPLVDLVILLFARTDGSMRFEADSDVIGKTLCRPAGYFTHDLDTPDRNWLS 510
            DP PLQQ  +AE+ LVTASNYAPFTD +WPG GM+TELVNAA E +P+P+ Y+I WE++WSKHL PMLD K+ DMGFPWF+PDC  NP + RC NFHFSDPLVDLVILLFAR+D    F+ DSD+ GKTLCRPAGYFTHDLD  DR WLS
Sbjct:   94 DPKPLQQDTEAEIRLVTASNYAPFTDLSWPGQGMLTELVNAAFEATPNPLTYSIEWENDWSKHLFPMLDSKEFDMGFPWFKPDCAGNPSNERCANFHFSDPLVDLVILLFARSDNPFNFDQDSDLHGKTLCRPAGYFTHDLDRADRRWLS 243          
BLAST of mRNA_H-canaliculatus_M_contigs77356.1.1 vs.
Match: Amino (acid ABC transporter substrate-binding protein, PAAT family n=1 Tax=Antarctobacter heliothermus TaxID=74033 RepID=A0A239B6C1_9RHOB)

HSP 1 Score: 237 bits (605), Expect = 4.250e-75
Identity = 105/172 (61.05%), Postives = 130/172 (75.58%), Query Frame = 1
Query:    1 EVPVGTVLDIPCPEGSVQKAPDPTPLQQA--DAELTLVTASNYAPFTDWNWPGHGMVTELVNAALEESPSPIPYAIVWEDNWSKHLSPMLDEKQVDMGFPWFRPDCENNPQHSRCVNFHFSDPLVDLVILLFARTDGSMRFEADSDVIGKTLCRPAGYFTHDLDTPDRNWLS 510
            +V  G VLD+PC EG V+   D TPL+Q   +AE+ L+T SNYAPFTD  WPG GMVTELVNAALE +PSP+ Y+I W+D+WSKHL P+LD K+ DMGFPW +P+C   P + RC NFHFSDPLV++++LLF R D    ++ D+DVIGK LCRP GYFTHDLD P R WL+
Sbjct:   75 QVSPGDVLDLPCQEGEVRA--DATPLRQGPDNAEMKLITGSNYAPFTDREWPGQGMVTELVNAALEATPSPVTYSITWQDDWSKHLFPILDSKEADMGFPWLKPNCAQTPDNERCANFHFSDPLVEILVLLFTRPDSGFVYDTDADVIGKVLCRPKGYFTHDLDRPGREWLN 244          
BLAST of mRNA_H-canaliculatus_M_contigs77356.1.1 vs.
Match: transporter (substrate-binding domain-containing protein n=1 Tax=Tropicibacter sp. LMIT003 TaxID=2267683 RepID=UPI000EF4C239)

HSP 1 Score: 236 bits (603), Expect = 7.360e-75
Identity = 106/170 (62.35%), Postives = 127/170 (74.71%), Query Frame = 1
Query:    1 EVPVGTVLDIPCPEGSVQKAPDPTPLQQADAELTLVTASNYAPFTDWNWPGHGMVTELVNAALEESPSPIPYAIVWEDNWSKHLSPMLDEKQVDMGFPWFRPDCENNPQHSRCVNFHFSDPLVDLVILLFARTDGSMRFEADSDVIGKTLCRPAGYFTHDLDTPDRNWLS 510
            +V  G VL IPC  GS Q   D TPL+  +AEL L+T SNYAPFTD  WPG GMVTELVNAA+E +P+P+ Y+I WED+WSKHL P LD K+ DMGFPW +PDC+  P   RC NFHFSDPLV+++ILLF R      +E+D+D++GK LCRP GYFTHDLD PDR WLS
Sbjct:   72 QVAPGDVLKIPCEPGSQQA--DATPLRVDNAELKLLTGSNYAPFTDREWPGQGMVTELVNAAMEATPAPVTYSIDWEDDWSKHLFPKLDAKEFDMGFPWLKPDCDQTPDDERCANFHFSDPLVEILILLFVREGSGFTYESDADILGKRLCRPKGYFTHDLDRPDRQWLS 239          
BLAST of mRNA_H-canaliculatus_M_contigs77356.1.1 vs.
Match: ABC (transporter substrate-binding protein n=3 Tax=Tateyamaria TaxID=299261 RepID=A0A0B4CFR6_9RHOB)

HSP 1 Score: 233 bits (594), Expect = 1.840e-73
Identity = 102/144 (70.83%), Postives = 118/144 (81.94%), Query Frame = 1
Query:   79 QQADAELTLVTASNYAPFTDWNWPGHGMVTELVNAALEESPSPIPYAIVWEDNWSKHLSPMLDEKQVDMGFPWFRPDCENNPQHSRCVNFHFSDPLVDLVILLFARTDGSMRFEADSDVIGKTLCRPAGYFTHDLDTPDRNWLS 510
            Q+A+AE+ LVTASNYAPFTD +WPG GM+TELVNAA E +P+P+ Y+I WE++WSKHL PMLD K+ DMGFPWF+PDC  NP + RC NFHFSDPLVDLVILLFA  D    F+ DSD+ GKTLCRPAGYFTHDLD  DR WLS
Sbjct:  100 QEAEAEIKLVTASNYAPFTDLDWPGQGMLTELVNAAFEATPNPLTYSIEWENDWSKHLFPMLDSKEFDMGFPWFKPDCAGNPSNERCANFHFSDPLVDLVILLFAHGDNPFTFDQDSDLHGKTLCRPAGYFTHDLDRSDRRWLS 243          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs77356.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
ABC1.860e-8468.82transporter substrate-binding protein n=1 Tax=Sulf... [more]
transporter2.650e-8367.98substrate-binding domain-containing protein n=1 Ta... [more]
transporter7.310e-8063.53substrate-binding domain-containing protein n=1 Ta... [more]
Transporter2.530e-7964.91substrate-binding domain-containing protein n=1 Ta... [more]
ABC5.630e-7763.53transporter substrate-binding protein n=1 Tax=Rose... [more]
ABC3.380e-7662.35transporter substrate-binding protein n=1 Tax=Pela... [more]
transporter4.970e-7671.33substrate-binding domain-containing protein n=1 Ta... [more]
Amino4.250e-7561.05acid ABC transporter substrate-binding protein, PA... [more]
transporter7.360e-7562.35substrate-binding domain-containing protein n=1 Ta... [more]
ABC1.840e-7370.83transporter substrate-binding protein n=3 Tax=Tate... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs77356contigH-canaliculatus_M_contigs77356:3..512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog388399.SSE37_09233
PFAMsLysM,SBP_bac_3
Model size510
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02030
KEGG TC3.A.1.3
KEGG ModuleM00236
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.55e-72
EggNOG OGsCOG0834@1|root,COG0834@2|Bacteria,1N3UB@1224|Proteobacteria,2U07Y@28211|Alphaproteobacteria
Descriptionprotein containing LysM domain
Cds size510
COG categoryET
BRITEko00000,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854111.0776114-CDS-H-canaliculatus_M_contigs77356:2..5121696854111.0776114-CDS-H-canaliculatus_M_contigs77356:2..512Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs77356 3..512 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs77356.1.1prot_H-canaliculatus_M_contigs77356.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs77356 3..512 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs77356.1.1

>prot_H-canaliculatus_M_contigs77356.1.1 ID=prot_H-canaliculatus_M_contigs77356.1.1|Name=mRNA_H-canaliculatus_M_contigs77356.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=170bp
EVPVGTVLDIPCPEGSVQKAPDPTPLQQADAELTLVTASNYAPFTDWNWP
GHGMVTELVNAALEESPSPIPYAIVWEDNWSKHLSPMLDEKQVDMGFPWF
RPDCENNPQHSRCVNFHFSDPLVDLVILLFARTDGSMRFEADSDVIGKTL
CRPAGYFTHDLDTPDRNWLS
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mRNA from alignment at H-canaliculatus_M_contigs77356:3..512-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs77356.1.1 ID=mRNA_H-canaliculatus_M_contigs77356.1.1|Name=mRNA_H-canaliculatus_M_contigs77356.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=510bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77356:3..512- (Hapterophycus canaliculatus Oshoro7m male)
GAGGTTCCAGTCGGCACGGTTTTGGACATTCCATGCCCCGAAGGCAGTGT GCAAAAAGCGCCTGATCCCACGCCTTTGCAGCAAGCCGATGCAGAGCTGA CCTTGGTCACAGCGTCGAACTATGCGCCGTTCACGGATTGGAACTGGCCC GGGCACGGCATGGTGACGGAACTGGTGAACGCGGCGCTTGAGGAAAGCCC GTCGCCAATCCCATACGCAATCGTATGGGAAGACAACTGGTCCAAACACC TCAGCCCGATGCTGGACGAAAAGCAGGTCGACATGGGGTTTCCGTGGTTT CGCCCGGATTGCGAAAACAATCCGCAACATTCGCGGTGTGTGAATTTTCA TTTCTCGGACCCGCTGGTTGATCTGGTCATTTTGCTGTTTGCACGCACCG ACGGGTCGATGCGTTTCGAGGCCGACAGCGATGTGATCGGCAAGACTTTG TGCCGCCCTGCGGGATATTTCACCCATGATTTGGACACGCCGGATCGCAA CTGGTTGTCC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs77356:3..512-

>mRNA_H-canaliculatus_M_contigs77356.1.1 ID=mRNA_H-canaliculatus_M_contigs77356.1.1|Name=mRNA_H-canaliculatus_M_contigs77356.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=510bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77356:3..512- (Hapterophycus canaliculatus Oshoro7m male)
GAGGTTCCAGTCGGCACGGTTTTGGACATTCCATGCCCCGAAGGCAGTGT
GCAAAAAGCGCCTGATCCCACGCCTTTGCAGCAAGCCGATGCAGAGCTGA
CCTTGGTCACAGCGTCGAACTATGCGCCGTTCACGGATTGGAACTGGCCC
GGGCACGGCATGGTGACGGAACTGGTGAACGCGGCGCTTGAGGAAAGCCC
GTCGCCAATCCCATACGCAATCGTATGGGAAGACAACTGGTCCAAACACC
TCAGCCCGATGCTGGACGAAAAGCAGGTCGACATGGGGTTTCCGTGGTTT
CGCCCGGATTGCGAAAACAATCCGCAACATTCGCGGTGTGTGAATTTTCA
TTTCTCGGACCCGCTGGTTGATCTGGTCATTTTGCTGTTTGCACGCACCG
ACGGGTCGATGCGTTTCGAGGCCGACAGCGATGTGATCGGCAAGACTTTG
TGCCGCCCTGCGGGATATTTCACCCATGATTTGGACACGCCGGATCGCAA
CTGGTTGTCC
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