mRNA_H-canaliculatus_M_contigs77214.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs77214.1.1
Unique NamemRNA_H-canaliculatus_M_contigs77214.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs77214.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIY4_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 2.560e-29
Identity = 57/86 (66.28%), Postives = 66/86 (76.74%), Query Frame = 1 
Query:    1 QAVKDAVPDAYVTIFLALLQLYKSGGIYVDLTTFFVRPLPANLDGFVAGGEGPGGVGGGALG-----DCSLRTTRDLRQRPVVMQV 243
            QAV+DAVPDAY+T++LALL+LYKSGGIYVDLTTFFVRPLP  LDGFVAGGEGPG             DCS+ T+ D   RP+VMQ+
Sbjct:  222 QAVQDAVPDAYITVYLALLELYKSGGIYVDLTTFFVRPLPTGLDGFVAGGEGPGSAXXXXXXXXDGRDCSVPTSNDRLHRPLVMQI 307
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BLAST of mRNA_H-canaliculatus_M_contigs77214.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSD4_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 6.370e-28
Identity = 58/96 (60.42%), Postives = 67/96 (69.79%), Query Frame = 1 
Query:    1 QAVKDAVPDAYVTIFLALLQLYKSGGIYVDLTTFFVRPLPANLDGFVAGGEGPGGVGGGAL----------GDCSLRTTRDLRQRPVVMQVAVTHH 258
            QAV++AVPDAYVT++LALL+LYK GGIYVDLTTFFVRPLPA +DGFVAGGEGPG  G               DCS+ T+ D   RP+VMQ     H
Sbjct:  232 QAVEEAVPDAYVTVYLALLELYKFGGIYVDLTTFFVRPLPAGIDGFVAGGEGPGSAGXXXXXXXXXXXXXXSDCSVPTSNDRLHRPLVMQYRAPQH 327
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BLAST of mRNA_H-canaliculatus_M_contigs77214.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR89_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 3.490e-16
Identity = 42/84 (50.00%), Postives = 53/84 (63.10%), Query Frame = 1 
Query:    7 VKDAVPDAYVTIFLALLQLYKSGGIYVDLTTFFVRPLPANLDGFVAGGEGPGGVGGGALGDCSLRTTRDLRQRPVVMQVAVTHH 258
            V DA+PD    +F+A L++YK+GGIY DLT F   PLP  LDGFV GG GPG  G  A  +CS RT+R     P++MQ +   H
Sbjct:  317 VDDALPDYSTVLFMAFLEIYKTGGIYGDLTLFHAAPLPEGLDGFVVGGMGPGSAG--ADYNCSGRTSRGRYHLPLLMQWSAPRH 398
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs77214.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized2.560e-2966.28protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized6.370e-2860.42protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.490e-1650.00protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs77214contigH-canaliculatus_M_contigs77214:219..476 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Model size258
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-25_001040.1
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854109.605677-CDS-H-canaliculatus_M_contigs77214:218..4761696854109.605677-CDS-H-canaliculatus_M_contigs77214:218..476Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs77214 219..476 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs77214.1.1prot_H-canaliculatus_M_contigs77214.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs77214 219..476 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs77214.1.1

>prot_H-canaliculatus_M_contigs77214.1.1 ID=prot_H-canaliculatus_M_contigs77214.1.1|Name=mRNA_H-canaliculatus_M_contigs77214.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=86bp
QAVKDAVPDAYVTIFLALLQLYKSGGIYVDLTTFFVRPLPANLDGFVAGG
EGPGGVGGGALGDCSLRTTRDLRQRPVVMQVAVTHH
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mRNA from alignment at H-canaliculatus_M_contigs77214:219..476+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs77214.1.1 ID=mRNA_H-canaliculatus_M_contigs77214.1.1|Name=mRNA_H-canaliculatus_M_contigs77214.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=258bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77214:219..476+ (Hapterophycus canaliculatus Oshoro7m male)
CAGGCGGTCAAGGACGCTGTCCCCGACGCGTACGTTACCATCTTCCTGGC
CCTCCTCCAGCTGTACAAGTCTGGGGGCATCTACGTAGATCTCACGACGT
TCTTCGTGCGCCCGCTTCCGGCCAACCTCGATGGGTTCGTGGCCGGTGGG
GAGGGCCCCGGCGGCGTCGGCGGCGGGGCCTTGGGCGACTGTTCGCTGCG
TACTACCCGTGACCTGCGACAACGCCCGGTCGTCATGCAGGTAGCCGTCA
CACATCAC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs77214:219..476+

>mRNA_H-canaliculatus_M_contigs77214.1.1 ID=mRNA_H-canaliculatus_M_contigs77214.1.1|Name=mRNA_H-canaliculatus_M_contigs77214.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=258bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77214:219..476+ (Hapterophycus canaliculatus Oshoro7m male)
CAGGCGGTCAAGGACGCTGTCCCCGACGCGTACGTTACCATCTTCCTGGC
CCTCCTCCAGCTGTACAAGTCTGGGGGCATCTACGTAGATCTCACGACGT
TCTTCGTGCGCCCGCTTCCGGCCAACCTCGATGGGTTCGTGGCCGGTGGG
GAGGGCCCCGGCGGCGTCGGCGGCGGGGCCTTGGGCGACTGTTCGCTGCG
TACTACCCGTGACCTGCGACAACGCCCGGTCGTCATGCAGGTAGCCGTCA
CACATCAC
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